Rh5CG051900

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014817
Physical Location & Seq
Reverse (-)
3714408 .. 3714816
409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG051900.1

Sequence Viewer

Length: 318 bp
ATGGTAAGGCTAAAAGTACCAGATTTGCATGAATTCTATACTTCTTTCGGTCCAGACACATCTGAAAACTGCAAGATCCGATGCCTAAATAACTGTTCTTGTCTGGCTTATGCATTTGTTAATAGTATAGGTTGTTTTGTCTGGTCCAAAAATCTTATTGATATACAGGAGTTTTCTTCTGGTGGAGTAGATGCTTTTATTCACATAGCACGAGCAGAACTGGGTGAAGGCAGGCCAATAAGATTAATTGTCAGTCTCACAGCTATTTGTTTGATCAGTATCTTGGGTGCCATAGTGTTTGGTTTGTACAGGTTGTGA

Protein Analysis

105

Amino Acids

11.62

Weight (kDa)

6.69

Isoelectric Point (pI)

28.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 3 - 55 1.6e-13 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 287
AclWI GGATC 1 cut(s) 70
AcsI RAATTY 1 cut(s) 32
AfaI GTAC 2 cut(s) 18, 308
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 1 cut(s) 70
AoxI GGCC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 32
AseI ATTAAT 1 cut(s) 245
AspS9I GGNCC 2 cut(s) 50, 144
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 2 cut(s) 50, 144
BanI GGYRCC 1 cut(s) 287
BauI CACGAG 1 cut(s) 210
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 260
Bme18I GGWCC 2 cut(s) 50, 144
BmgT120I GGNCC 2 cut(s) 50, 144
BmiI GGNNCC 1 cut(s) 289
BmrI ACTGGG 1 cut(s) 230
BmsI GCATC 2 cut(s) 71, 181
BmuI ACTGGG 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 278
BseJI GATNNNNATC 1 cut(s) 278
BseNI ACTGG 1 cut(s) 225
BshFI GGCC 1 cut(s) 235
BshNI GGYRCC 1 cut(s) 287
BsmAI GTCTC 1 cut(s) 260
BsnI GGCC 1 cut(s) 235
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 2 cut(s) 75, 273
BspANI GGCC 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 289
BspPI GGATC 1 cut(s) 70
BspT107I GGYRCC 1 cut(s) 287
BsrGI TGTACA 1 cut(s) 306
BsrI ACTGG 1 cut(s) 225
BssMI GATC 2 cut(s) 75, 273
BssSI CACGAG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 95
BstAUI TGTACA 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 233
BstKTI GATC 2 cut(s) 78, 276
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 2 cut(s) 75, 273
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BsuRI GGCC 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 50, 144
Csp6I GTAC 2 cut(s) 17, 307
CviAII CATG 1 cut(s) 29
CviJI RGCY 4 cut(s) 10, 107, 235, 263
CviKI_1 RGCY 4 cut(s) 10, 107, 235, 263
CviQI GTAC 2 cut(s) 17, 307
DpnI GATC 2 cut(s) 77, 275
DpnII GATC 2 cut(s) 75, 273
Eco47I GGWCC 2 cut(s) 50, 144
EcoRI GAATTC 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 115
FaeI CATG 1 cut(s) 32
FaiI YATR 7 cut(s) 30, 39, 111, 128, 164, 206, 293
FatI CATG 1 cut(s) 28
FbaI TGATCA 1 cut(s) 273
HaeIII GGCC 1 cut(s) 235
Hin1II CATG 1 cut(s) 32
HphI GGTGA 1 cut(s) 236
Hpy188I TCNGA 2 cut(s) 64, 80
Hpy188III TCNNGA 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 3 cut(s) 28, 72, 113
Hsp92II CATG 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 2 cut(s) 75, 273
LpnPI CCDG 9 cut(s) 33, 66, 89, 127, 152, 165, 206, 217, 295
LweI GCATC 2 cut(s) 71, 181
MalI GATC 2 cut(s) 77, 275
MboI GATC 2 cut(s) 75, 273
MboII GAAGA 1 cut(s) 168
MflI RGATCY 1 cut(s) 75
MluCI AATT 2 cut(s) 32, 246
Mph1103I ATGCAT 1 cut(s) 115
MseI TTAA 2 cut(s) 120, 245
NdeII GATC 2 cut(s) 75, 273
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 289
NsiI ATGCAT 1 cut(s) 115
PshBI ATTAAT 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 2 cut(s) 50, 144
PsuI RGATCY 1 cut(s) 75
RsaI GTAC 2 cut(s) 18, 308
RsaNI GTAC 2 cut(s) 17, 307
SaqAI TTAA 2 cut(s) 120, 245
Sau3AI GATC 2 cut(s) 75, 273
Sau96I GGNCC 2 cut(s) 50, 144
SetI ASST 3 cut(s) 133, 265, 314
SfaNI GCATC 2 cut(s) 71, 181
SinI GGWCC 2 cut(s) 50, 144
Sse9I AATT 2 cut(s) 32, 246
TaaI ACNGT 1 cut(s) 95
TaqII GACCGA 1 cut(s) 38
TasI AATT 2 cut(s) 32, 246
TatI WGTACW 1 cut(s) 306
Tru1I TTAA 2 cut(s) 120, 245
Tru9I TTAA 2 cut(s) 120, 245
TspDTI ATGAA 1 cut(s) 45
VpaK11BI GGWCC 2 cut(s) 50, 144
VspI ATTAAT 1 cut(s) 245
XapI RAATTY 1 cut(s) 32
Zsp2I ATGCAT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.