Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0014817

Physical Location & Seq

Genomic Coordinates Reverse (-)

17627564 .. 17628814

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0199900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGACAATGAGAGCGACGAAAATCAAAACAACCAACACTGAGAGAGATCAAGAAGTAGAAGACAAAAGAGATGATGAGAAACCCTGCATTATTCTACAATTGCCCGACCACATAATCCTGGAGATCTTCTGTAGAATCCCAATAAACACGGTCATCCAATGCAAGTATGTATGCAAGTCTTGGCGCCGTTCTCTCACAGACCAAGAGTTCTCAAAATCCCTATTTGCACGTACTCCGGCGTGCTTGTTTCTCCAAGACTATAGTAGGACCCCATGCCGGAGGCGAAACACCATACGTCATCGTATACCCCCGAATAAGCACATCTTGGCCAACTTGCAAAGCGTCTCGAGCCCAAACAACGTGGTCTTGAAGCTTTCAGATCCCAATGCCTTATACAACAGGCTCCATTCAAGTGTTACAGGTATTATGGGATCCTGCAATGGCTTCCTCTGCTTATTCCGCCATAATTGTAAAATTGGTGCTTTCATTTTTAACATATCCAATCCCATTACCGGCGAGTCTGTACCTCTTCCAGTCAATAAAGAAATAGGCCGTCCGGCTCACTTTGGGTTTGGGTTTAGTCCCATAAGTGATGTCTATAAGGTGGTTGTGTTTACATCCAATGAAGTTAATGAACATCGCTTTCACAAAAGAAAATTGAACGTGATGGTTTTGACTGTTGGCTCTGGGATTTGGAGAAGAATTGGCAAAGTATCCAATGTCATGCATGGAACACGGGAAGGGGTCTTTCATAATGGATTTCTTCACTGGGTTTGCCACTGTAGAAAAGGTTGTCATCACTTTTTCATACGTGCATTTGATGTTGAAAGCGAGAGTTTCAAGGATTTACCAATGCCCCCTTATTATTTCCGTCCCAATTCTATACCTCAAATGCGAGTCTTAGGAGGTTCACTTTCTGTAAGTGATGGCCTCACGTTTTGGGTAATGAAAGAGTACGGCGTCAAGAGGTCTTGGACCAAAGAGCTTGAAATTGGACATGATACAGTTGATCCTAATGACGCATATGGGTCCTATATACGATATGTTTCAGTTTTGAAATTTACAGAGGGGACGGTTTTGTTGTTAACAAACACTAATTTGTGCCTCTATACTCCTGAAACAAGGACCCTTGTGAGGGTTGAGATTGATGGGATGCCATCAGGGCGCTTCCATTTCGTGGCAGACCATATTCCGAGCTTTGTTTCTCCGAAGGATATTATCAAGGATTACCTCTCCAAAGTACCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

416

Amino Acids

47.64

Weight (kDa)

9.32

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	31 - 70	1.2e-08	F-box domain
F-box-like	PF12937	31 - 75	6.9e-07	F-box-like
FBA_1	PF07734	125 - 364	5.3e-13	F-box associated beta propeller domain
FBA_3	PF08268	136 - 390	7.8e-25	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014817)

Species	Orthologous Gene IDs
malus_domestica	MD05G1331800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319261 RchiOBHm_Chr3g0485181 RchiOBHm_Chr5g0005271
rosa_multiflora	Rmu_co8365119.1_g000001 Rmu_sc0003574.1_g000004 Rmu_sc0005072.1_g000020
rosa_roxburghii	Rroxscaffold_7G00196510
rosa_rugosa	Rorug01G0087200 Rorug03G0199900 Rorug06G0067000
rosa_samantha	Rh1BG035300 Rh1BG035600 Rh5CG049000 Rh5CG049700 Rh5CG051700 Rh5CG051900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	183
AccB7I	CCANNNNNTGG	1 cut(s)	1177
AccI	GTMKAC	1 cut(s)	304
AciI	CCGC	1 cut(s)	460
AclWI	GGATC	4 cut(s)	374, 426, 439, 1004
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	1058
AcyI	GRCGYC	2 cut(s)	184, 960
AfaI	GTAC	4 cut(s)	232, 525, 956, 1242
AfiI	CCNNNNNNNGG	5 cut(s)	276, 512, 1134, 1135, 1177
AgsI	TTSAA	7 cut(s)	370, 411, 661, 827, 841, 989, 1057
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	3 cut(s)	373, 985, 1197
AluI	AGCT	3 cut(s)	373, 985, 1197
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	4 cut(s)	374, 426, 439, 1004
Ama87I	CYCGRG	1 cut(s)	346
AoxI	GGCC	3 cut(s)	327, 550, 928
ApoI	RAATTY	1 cut(s)	1058
AspLEI	GCGC	2 cut(s)	186, 1167
AspS9I	GGNCC	4 cut(s)	267, 975, 1029, 1125
AvaI	CYCGRG	1 cut(s)	346
AvaII	GGWCC	4 cut(s)	267, 975, 1029, 1125
BalI	TGGCCA	1 cut(s)	329
BamHI	GGATCC	1 cut(s)	431
BanI	GGYRCC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	66
BccI	CCATC	4 cut(s)	661, 920, 1142, 1165
BceAI	ACGGC	3 cut(s)	171, 537, 973
BciT130I	CCWGG	1 cut(s)	119
BciVI	GTATCC	1 cut(s)	724
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	1 cut(s)	1245
BfmI	CTRYAG	3 cut(s)	130, 259, 781
BfoI	RGCGCY	2 cut(s)	187, 1168
BfuI	GTATCC	1 cut(s)	724
BglI	GCCNNNNNGGC	1 cut(s)	1162
BglII	AGATCT	1 cut(s)	123
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	4 cut(s)	267, 975, 1029, 1125
BmeT110I	CYCGRG	1 cut(s)	346
BmgT120I	GGNCC	4 cut(s)	267, 975, 1029, 1125
BmiI	GGNNCC	6 cut(s)	185, 269, 404, 433, 1030, 1127
BmrFI	CCNGG	1 cut(s)	119
BmrI	ACTGGG	1 cut(s)	778
BmsI	GCATC	1 cut(s)	1143
BmuI	ACTGGG	1 cut(s)	778
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	140
BsaAI	YACGTR	2 cut(s)	230, 812
BsaHI	GRCGYC	2 cut(s)	184, 960
Bsc4I	CCNNNNNNNGG	5 cut(s)	276, 512, 1134, 1135, 1177
Bse118I	RCCGGY	1 cut(s)	512
Bse1I	ACTGG	2 cut(s)	533, 773
Bse3DI	GCAATG	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	119
BseGI	GGATG	3 cut(s)	153, 617, 1158
BseLI	CCNNNNNNNGG	5 cut(s)	276, 512, 1134, 1135, 1177
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	2 cut(s)	533, 773
BshFI	GGCC	3 cut(s)	329, 552, 930
BshNI	GGYRCC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	346
BsiSI	CCGG	4 cut(s)	236, 277, 513, 557
BslFI	GGGAC	3 cut(s)	567, 858, 1084
BslI	CCNNNNNNNGG	5 cut(s)	276, 512, 1134, 1135, 1177
BsmAI	GTCTC	1 cut(s)	349
BsmBI	CGTCTC	1 cut(s)	349
BsmFI	GGGAC	3 cut(s)	567, 858, 1084
BsnI	GGCC	3 cut(s)	329, 552, 930
BsoBI	CYCGRG	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	5 cut(s)	46, 123, 379, 431, 1009
BspACI	CCGC	1 cut(s)	460
BspANI	GGCC	3 cut(s)	329, 552, 930
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	6 cut(s)	185, 269, 404, 433, 1030, 1127
BspPI	GGATC	4 cut(s)	374, 426, 439, 1004
BspT107I	GGYRCC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	512
BsrI	ACTGG	2 cut(s)	533, 773
BssAI	RCCGGY	1 cut(s)	512
BssMI	GATC	5 cut(s)	46, 123, 379, 431, 1009
BssNAI	GTATAC	1 cut(s)	305
BssNI	GRCGYC	2 cut(s)	184, 960
Bst1107I	GTATAC	1 cut(s)	305
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	5 cut(s)	151, 679, 782, 1006, 1075
Bst6I	CTCTTC	1 cut(s)	534
BstACI	GRCGYC	2 cut(s)	184, 960
BstBAI	YACGTR	2 cut(s)	230, 812
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	39, 901
BstF5I	GGATG	3 cut(s)	153, 617, 1158
BstH2I	RGCGCY	2 cut(s)	187, 1168
BstHHI	GCGC	2 cut(s)	186, 1167
BstKTI	GATC	5 cut(s)	49, 126, 382, 434, 1012
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	5 cut(s)	46, 123, 379, 431, 1009
BstMWI	GCNNNNNNNGC	4 cut(s)	348, 450, 459, 1162
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	3 cut(s)	130, 259, 781
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	3 cut(s)	123, 379, 431
BstYI	RGATCY	3 cut(s)	123, 379, 431
BstZ17I	GTATAC	1 cut(s)	305
BsuI	GTATCC	1 cut(s)	724
BsuRI	GGCC	3 cut(s)	329, 552, 930
BtgZI	GCGATG	1 cut(s)	623
BtsCI	GGATG	3 cut(s)	153, 617, 1158
BtsIMutI	CAGTG	3 cut(s)	36, 766, 778
Cac8I	GCNNGC	1 cut(s)	241
CfoI	GCGC	2 cut(s)	186, 1167
Cfr10I	RCCGGY	1 cut(s)	512
Cfr13I	GGNCC	4 cut(s)	267, 975, 1029, 1125
CseI	GACGC	3 cut(s)	331, 949, 1028
Csp6I	GTAC	4 cut(s)	231, 524, 955, 1241
CspCI	CAANNNNNGTGG	2 cut(s)	342, 377
CviAII	CATG	4 cut(s)	273, 724, 728, 998
CviQI	GTAC	4 cut(s)	231, 524, 955, 1241
DdeI	CTNAG	2 cut(s)	39, 901
DinI	GGCGCC	1 cut(s)	185
DpnI	GATC	5 cut(s)	48, 125, 381, 433, 1011
DpnII	GATC	5 cut(s)	46, 123, 379, 431, 1009
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
EciI	GGCGGA	1 cut(s)	449
Eco24I	GRGCYC	1 cut(s)	353
Eco47I	GGWCC	4 cut(s)	267, 975, 1029, 1125
Eco88I	CYCGRG	1 cut(s)	346
EcoO109I	RGGNCCY	3 cut(s)	267, 1029, 1125
EcoRII	CCWGG	1 cut(s)	117
EcoT22I	ATGCAT	1 cut(s)	729
EcoT38I	GRGCYC	1 cut(s)	353
EgeI	GGCGCC	1 cut(s)	185
EheI	GGCGCC	1 cut(s)	185
Esp3I	CGTCTC	1 cut(s)	349
FaeI	CATG	4 cut(s)	276, 727, 731, 1001
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	3 cut(s)	567, 858, 1084
FatI	CATG	4 cut(s)	272, 723, 727, 997
FauNDI	CATATG	1 cut(s)	1024
FblI	GTMKAC	1 cut(s)	304
FokI	GGATG	3 cut(s)	140, 604, 1165
FriOI	GRGCYC	1 cut(s)	353
FspBI	CTAG	1 cut(s)	1245
GlaI	GCGC	2 cut(s)	185, 1166
GsuI	CTGGAG	1 cut(s)	140
HaeII	RGCGCY	2 cut(s)	187, 1168
HaeIII	GGCC	3 cut(s)	329, 552, 930
HapII	CCGG	4 cut(s)	236, 277, 513, 557
HgaI	GACGC	3 cut(s)	331, 949, 1028
HhaI	GCGC	2 cut(s)	186, 1167
Hin1I	GRCGYC	2 cut(s)	184, 960
Hin1II	CATG	4 cut(s)	276, 727, 731, 1001
Hin6I	GCGC	2 cut(s)	184, 1165
HinP1I	GCGC	2 cut(s)	184, 1165
HincII	GTYRAC	1 cut(s)	1086
HindII	GTYRAC	1 cut(s)	1086
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	3 cut(s)	135, 518, 897
HpaI	GTTAAC	1 cut(s)	1086
HpaII	CCGG	4 cut(s)	236, 277, 513, 557
Hpy166II	GTNNAC	4 cut(s)	305, 615, 911, 1086
Hpy188I	TCNGA	3 cut(s)	379, 1194, 1209
Hpy188III	TCNNGA	5 cut(s)	50, 346, 367, 964, 1115
Hpy8I	GTNNAC	4 cut(s)	305, 615, 911, 1086
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	734, 1204
HpyCH4III	ACNGT	5 cut(s)	151, 679, 782, 1006, 1075
HpyCH4IV	ACGT	6 cut(s)	229, 295, 360, 663, 811, 935
HpyCH4V	TGCA	8 cut(s)	87, 162, 174, 227, 337, 438, 727, 815
HpyF10VI	GCNNNNNNNGC	4 cut(s)	348, 450, 459, 1162
HpyF3I	CTNAG	2 cut(s)	39, 901
HpySE526I	ACGT	6 cut(s)	229, 295, 360, 663, 811, 935
Hsp92I	GRCGYC	2 cut(s)	184, 960
Hsp92II	CATG	4 cut(s)	276, 727, 731, 1001
HspAI	GCGC	2 cut(s)	184, 1165
KasI	GGCGCC	1 cut(s)	183
KspAI	GTTAAC	1 cut(s)	1086
Kzo9I	GATC	5 cut(s)	46, 123, 379, 431, 1009
LmnI	GCTCC	1 cut(s)	408
LweI	GCATC	1 cut(s)	1143
MaeI	CTAG	1 cut(s)	1245
MaeII	ACGT	6 cut(s)	229, 295, 360, 663, 811, 935
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	5 cut(s)	48, 125, 381, 433, 1011
MboI	GATC	5 cut(s)	46, 123, 379, 431, 1009
MboII	GAAGA	5 cut(s)	71, 118, 521, 711, 755
MfeI	CAATTG	1 cut(s)	98
MflI	RGATCY	3 cut(s)	123, 379, 431
MhlI	GDGCHC	1 cut(s)	353
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	9 cut(s)	98, 466, 474, 656, 702, 877, 990, 1058, 1096
MluNI	TGGCCA	1 cut(s)	329
Mly113I	GGCGCC	1 cut(s)	184
MlyI	GAGTC	2 cut(s)	527, 906
Mox20I	TGGCCA	1 cut(s)	329
Mph1103I	ATGCAT	1 cut(s)	729
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	4 cut(s)	492, 630, 1085, 1249
MslI	CAYNNNNRTG	1 cut(s)	411
Msp20I	TGGCCA	1 cut(s)	329
MspI	CCGG	4 cut(s)	236, 277, 513, 557
MspR9I	CCNGG	1 cut(s)	119
MunI	CAATTG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	119
MwoI	GCNNNNNNNGC	4 cut(s)	348, 450, 459, 1162
NarI	GGCGCC	1 cut(s)	184
NdeI	CATATG	1 cut(s)	1024
NdeII	GATC	5 cut(s)	46, 123, 379, 431, 1009
NlaIII	CATG	4 cut(s)	276, 727, 731, 1001
NlaIV	GGNNCC	6 cut(s)	185, 269, 404, 433, 1030, 1127
NsiI	ATGCAT	1 cut(s)	729
PaeR7I	CTCGAG	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	135
PflMI	CCANNNNNTGG	1 cut(s)	1177
PfoI	TCCNGGA	1 cut(s)	117
PleI	GAGTC	2 cut(s)	526, 905
PluTI	GGCGCC	1 cut(s)	187
PpsI	GAGTC	2 cut(s)	526, 905
Ppu21I	YACGTR	2 cut(s)	230, 812
PpuMI	RGGWCCY	3 cut(s)	267, 1029, 1125
Psp5II	RGGWCCY	3 cut(s)	267, 1029, 1125
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	6 cut(s)	185, 269, 404, 433, 1030, 1127
PspPI	GGNCC	4 cut(s)	267, 975, 1029, 1125
PspPPI	RGGWCCY	3 cut(s)	267, 1029, 1125
PsuI	RGATCY	3 cut(s)	123, 379, 431
RsaI	GTAC	4 cut(s)	232, 525, 956, 1242
RsaNI	GTAC	4 cut(s)	231, 524, 955, 1241
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	4 cut(s)	492, 630, 1085, 1249
Sau3AI	GATC	5 cut(s)	46, 123, 379, 431, 1009
Sau96I	GGNCC	4 cut(s)	267, 975, 1029, 1125
SchI	GAGTC	2 cut(s)	527, 906
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	1 cut(s)	353
SfaNI	GCATC	1 cut(s)	1143
SfcI	CTRYAG	3 cut(s)	130, 259, 781
SfoI	GGCGCC	1 cut(s)	185
Sfr274I	CTCGAG	1 cut(s)	346
SinI	GGWCC	4 cut(s)	267, 975, 1029, 1125
SlaI	CTCGAG	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	9 cut(s)	98, 466, 474, 656, 702, 877, 990, 1058, 1096
SsiI	CCGC	1 cut(s)	460
SspDI	GGCGCC	1 cut(s)	183
SspMI	CTAG	1 cut(s)	1245
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	5 cut(s)	151, 679, 782, 1006, 1075
TaiI	ACGT	6 cut(s)	232, 298, 363, 666, 814, 938
TaqI	TCGA	1 cut(s)	347
TasI	AATT	9 cut(s)	98, 466, 474, 656, 702, 877, 990, 1058, 1096
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	4 cut(s)	492, 630, 1085, 1249
Tru9I	TTAA	4 cut(s)	492, 630, 1085, 1249
TscAI	CASTG	3 cut(s)	43, 773, 785
TspDTI	ATGAA	6 cut(s)	475, 639, 648, 740, 796, 962
TspGWI	ACGGA	1 cut(s)	860
TspRI	CASTG	3 cut(s)	43, 773, 785
Van91I	CCANNNNNTGG	1 cut(s)	1177
VpaK11BI	GGWCC	4 cut(s)	267, 975, 1029, 1125
XapI	RAATTY	1 cut(s)	1058
XhoI	CTCGAG	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	304
XspI	CTAG	1 cut(s)	1245
Zsp2I	ATGCAT	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.