RchiOBHm_Chr5g0005271

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014817
Physical Location & Seq
Reverse (-)
3394630 .. 3395406
777 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28650

Sequence Viewer

Length: 300 bp
ATGGAAAGGTTAAAAGTACCAGATTCTCATGAATTTGTTGTGGCAGCTTTGGATGCTAAAAACACATCTGACGATTGCAAGATACGGTGCCTAAATAACTGTTCTTGCTTGGCATATGCATTTGTTAGTAAAATAGGTTGTTTGCTCTGGTCTAAAGACCTTCTTGATATACAGGAGTTTTCCTCTCGTGGTGAAGATCTTTATATTTGCCTAGCACGTTCAGAACTAGGTAAAGGAAAGCCAATGAAGTTAATTTCCAGCCTTACAGCTACTTTTTCTATCAGTATCTTGTTTCCATAG

Protein Analysis

99

Amino Acids

10.99

Weight (kDa)

6.54

Isoelectric Point (pI)

38.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 2 - 57 2.2e-14 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 87
AcsI RAATTY 1 cut(s) 32
AfaI GTAC 1 cut(s) 18
AluBI AGCT 2 cut(s) 47, 269
AluI AGCT 2 cut(s) 47, 269
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 203
BanI GGYRCC 1 cut(s) 87
BauI CACGAG 1 cut(s) 186
BbvI GCAGC 1 cut(s) 56
BfaI CTAG 2 cut(s) 212, 227
BglII AGATCT 1 cut(s) 196
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 89
BmsI GCATC 1 cut(s) 43
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BseGI GGATG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 56
BshNI GGYRCC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 196
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 87
BssMI GATC 1 cut(s) 196
BssSI CACGAG 1 cut(s) 186
Bst2BI CACGAG 1 cut(s) 186
Bst4CI ACNGT 2 cut(s) 87, 101
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BtsCI GGATG 1 cut(s) 58
CciI TCATGA 1 cut(s) 28
Csp6I GTAC 1 cut(s) 17
CviAII CATG 1 cut(s) 29
CviJI RGCY 4 cut(s) 47, 241, 261, 269
CviKI_1 RGCY 4 cut(s) 47, 241, 261, 269
CviQI GTAC 1 cut(s) 17
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
EcoT22I ATGCAT 1 cut(s) 121
FaeI CATG 1 cut(s) 32
FaiI YATR 6 cut(s) 30, 115, 117, 170, 204, 298
FalI AAGNNNNNCTT 2 cut(s) 147, 179
FatI CATG 1 cut(s) 28
FauNDI CATATG 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 2 cut(s) 212, 227
GluI GCNGC 1 cut(s) 45
Hin1II CATG 1 cut(s) 32
HinfI GANTC 1 cut(s) 23
HphI GGTGA 1 cut(s) 203
Hpy188I TCNGA 2 cut(s) 70, 223
Hpy188III TCNNGA 2 cut(s) 29, 164
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 2 cut(s) 87, 101
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 78, 119
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 1 cut(s) 32
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 4 cut(s) 33, 133, 158, 271
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 1 cut(s) 43
MaeI CTAG 2 cut(s) 212, 227
MaeII ACGT 1 cut(s) 217
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 1 cut(s) 206
MflI RGATCY 1 cut(s) 196
MluCI AATT 2 cut(s) 32, 252
MnlI CCTC 1 cut(s) 193
Mph1103I ATGCAT 1 cut(s) 121
MseI TTAA 2 cut(s) 11, 251
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeI CATATG 1 cut(s) 115
NdeII GATC 1 cut(s) 196
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 121
PagI TCATGA 1 cut(s) 28
PfeI GAWTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 89
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 11, 251
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 1 cut(s) 196
SetI ASST 7 cut(s) 11, 49, 139, 162, 220, 232, 271
SfaNI GCATC 1 cut(s) 43
Sse9I AATT 2 cut(s) 32, 252
SspMI CTAG 2 cut(s) 212, 227
TaaI ACNGT 2 cut(s) 87, 101
TaiI ACGT 1 cut(s) 220
TasI AATT 2 cut(s) 32, 252
TfiI GAWTC 1 cut(s) 23
Tru1I TTAA 2 cut(s) 11, 251
Tru9I TTAA 2 cut(s) 11, 251
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 2 cut(s) 45, 260
XapI RAATTY 1 cut(s) 32
XspI CTAG 2 cut(s) 212, 227
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.