Rh1BG035600

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0014817
Physical Location & Seq
Reverse (-)
4775206 .. 4775786
581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG035600.1

Sequence Viewer

Length: 261 bp
ATGGTAAGGCTTAAAGTACCAGATTTTCATGAATACTATACTTCTTTCGGTGCTCCAGTCACATCTGAAAACTGCAAGATCCAATGCCTAAATAACTGTTCTTGTCTGGCTTATGCATTTGTTAATAGTATAGGTTGTTTGGTCTGGTCCAAAGATCTTATTGATATACAAGAGTTTTCTGGTGGTGGAGTTGATGTTTTTATTCGCTTAGCACGAGCAGAACTGGGTTGCGAGCTAACCAAAGAGGAAAAACCACAGTAA

Protein Analysis

86

Amino Acids

9.61

Weight (kDa)

4.97

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 3 - 56 7.8e-15 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 73
AfaI GTAC 1 cut(s) 18
AluBI AGCT 1 cut(s) 235
AluI AGCT 1 cut(s) 235
Alw21I GWGCWC 1 cut(s) 55
AlwI GGATC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 147
AvaII GGWCC 1 cut(s) 147
BauI CACGAG 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 55
BglII AGATCT 1 cut(s) 154
BlpI GCTNAGC 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 147
BmrI ACTGGG 1 cut(s) 233
BmuI ACTGGG 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bse1I ACTGG 2 cut(s) 56, 228
BseNI ACTGG 2 cut(s) 56, 228
BsiHKAI GWGCWC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 55
Bsp143I GATC 2 cut(s) 78, 154
Bsp1720I GCTNAGC 1 cut(s) 208
BspHI TCATGA 1 cut(s) 28
BspPI GGATC 1 cut(s) 73
BsrI ACTGG 2 cut(s) 56, 228
BssMI GATC 2 cut(s) 78, 154
BssSI CACGAG 1 cut(s) 213
Bst2BI CACGAG 1 cut(s) 213
Bst4CI ACNGT 2 cut(s) 98, 258
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 208
BstKTI GATC 2 cut(s) 81, 157
BstMBI GATC 2 cut(s) 78, 154
BstX2I RGATCY 2 cut(s) 78, 154
BstYI RGATCY 2 cut(s) 78, 154
Cac8I GCNNGC 1 cut(s) 233
CciI TCATGA 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 17
CviAII CATG 1 cut(s) 29
CviJI RGCY 3 cut(s) 10, 110, 235
CviKI_1 RGCY 3 cut(s) 10, 110, 235
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 1 cut(s) 208
DpnI GATC 2 cut(s) 80, 156
DpnII GATC 2 cut(s) 78, 154
Eco47I GGWCC 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 118
FaeI CATG 1 cut(s) 32
FaiI YATR 5 cut(s) 30, 39, 114, 131, 167
FatI CATG 1 cut(s) 28
GsuI CTGGAG 1 cut(s) 39
Hin1II CATG 1 cut(s) 32
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 29
HpyCH4III ACNGT 2 cut(s) 98, 258
HpyCH4V TGCA 2 cut(s) 75, 116
HpyF3I CTNAG 1 cut(s) 208
Hsp92II CATG 1 cut(s) 32
Kzo9I GATC 2 cut(s) 78, 154
LmnI GCTCC 1 cut(s) 58
LpnPI CCDG 6 cut(s) 33, 69, 92, 130, 165, 209
MaeIII GTNAC 1 cut(s) 58
MalI GATC 2 cut(s) 80, 156
MboI GATC 2 cut(s) 78, 154
MflI RGATCY 2 cut(s) 78, 154
MhlI GDGCHC 1 cut(s) 55
MnlI CCTC 1 cut(s) 238
Mph1103I ATGCAT 1 cut(s) 118
MseI TTAA 2 cut(s) 12, 123
NdeII GATC 2 cut(s) 78, 154
NlaIII CATG 1 cut(s) 32
NmuCI GTSAC 1 cut(s) 58
NsiI ATGCAT 1 cut(s) 118
PagI TCATGA 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 211
PspPI GGNCC 1 cut(s) 147
PsuI RGATCY 2 cut(s) 78, 154
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 12, 123
Sau3AI GATC 2 cut(s) 78, 154
Sau96I GGNCC 1 cut(s) 147
SduI GDGCHC 1 cut(s) 55
SetI ASST 2 cut(s) 136, 237
SinI GGWCC 1 cut(s) 147
TaaI ACNGT 2 cut(s) 98, 258
Tru1I TTAA 2 cut(s) 12, 123
Tru9I TTAA 2 cut(s) 12, 123
TseFI GTSAC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 2 cut(s) 17, 45
VpaK11BI GGWCC 1 cut(s) 147
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.