Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014817

Physical Location & Seq

Genomic Coordinates Reverse (-)

8853058 .. 8854701

Gene Structure 1644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0067000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGACAAGGACAAGAGCCGTACCGATCTGCTCGCTGCTGGCCGTAAAAAGGAATATAAGGAGAAGCCAGATTATGCACGTTGTGTTGCTATTGTAGCATATGCATCTTTGAGGGAGATGATAAAACCTGGTGCCTTGGCTATTATTTCACCTATAGCAGTTGGTATTGCGTTCCGGATATTTGGATACTATCCGGAGGCAAAGGAAGTGATTGTCATAAGGCTGCAATTACAGGAGACATTCTCTGAATTCTCAAAAATGATATCCTCTTGTTTGTTTTGCAGAGTGGGAGACCCATTCAAAGACACAGCTGGACCTTCACTTCATGTCCTTATTAAAATGCTTGCTACAAAAATGCTGGTCATGGCTCCTGTCTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

127

Amino Acids

14.19

Weight (kDa)

9.32

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	18 - 59	6.5e-10	Inorganic H+ pyrophosphatase
H_PPase	PF03030	96 - 122	1.1e-07	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014817)

Species	Orthologous Gene IDs
malus_domestica	MD05G1331800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319261 RchiOBHm_Chr3g0485181 RchiOBHm_Chr5g0005271
rosa_multiflora	Rmu_co8365119.1_g000001 Rmu_sc0003574.1_g000004 Rmu_sc0005072.1_g000020
rosa_roxburghii	Rroxscaffold_7G00196510
rosa_rugosa	Rorug01G0087200 Rorug03G0199900 Rorug06G0067000
rosa_samantha	Rh1BG035300 Rh1BG035600 Rh5CG049000 Rh5CG049700 Rh5CG051700 Rh5CG051900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccIII	TCCGGA	2 cut(s)	174, 193
AcoI	YGGCCR	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	248
AdeI	CACNNNGTG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw26I	GTCTC	2 cut(s)	230, 285
Aor13HI	TCCGGA	2 cut(s)	174, 193
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	35, 223
ApoI	RAATTY	1 cut(s)	248
AspS9I	GGNCC	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	141
AvaII	GGWCC	1 cut(s)	314
BanI	GGYRCC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	22, 210
BceAI	ACGGC	2 cut(s)	3, 27
BciT130I	CCWGG	1 cut(s)	129
BciVI	GTATCC	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	230, 285
BfmI	CTRYAG	1 cut(s)	153
BfuI	GTATCC	1 cut(s)	179
BisI	GCNGC	2 cut(s)	36, 224
BlsI	GCNGC	2 cut(s)	37, 225
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	2 cut(s)	133, 369
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	113
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
BsaI	GGTCTC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	2 cut(s)	174, 193
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
BseAI	TCCGGA	2 cut(s)	174, 193
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	22, 210
BshFI	GGCC	1 cut(s)	42
BshNI	GGYRCC	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	175, 194
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	2 cut(s)	230, 285
BsnI	GGCC	1 cut(s)	42
Bso31I	GGTCTC	1 cut(s)	285
Bsp13I	TCCGGA	2 cut(s)	174, 193
Bsp143I	GATC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	42
BspEI	TCCGGA	2 cut(s)	174, 193
BspLI	GGNNCC	2 cut(s)	133, 369
BspT107I	GGYRCC	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	33, 40, 345
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	2 cut(s)	230, 285
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	2 cut(s)	22, 210
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	42
Cac8I	GCNNGC	3 cut(s)	33, 40, 345
Cfr13I	GGNCC	1 cut(s)	314
CsiI	ACCWGGT	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	2 cut(s)	326, 364
CviJI	RGCY	7 cut(s)	18, 42, 67, 140, 223, 311, 368
CviKI_1	RGCY	7 cut(s)	18, 42, 67, 140, 223, 311, 368
CviQI	GTAC	1 cut(s)	21
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
DraIII	CACNNNGTG	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	285
Eco32I	GATATC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	127
EcoRV	GATATC	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	135
EcoT22I	ATGCAT	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	329, 367
FaiI	YATR	8 cut(s)	57, 75, 100, 102, 155, 218, 327, 365
FatI	CATG	2 cut(s)	325, 363
FauNDI	CATATG	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	36, 224
Fsp4HI	GCNGC	2 cut(s)	36, 224
GluI	GCNGC	2 cut(s)	36, 224
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	2 cut(s)	175, 194
Hin1II	CATG	2 cut(s)	329, 367
HpaII	CCGG	2 cut(s)	175, 194
HphI	GGTGA	1 cut(s)	141
Hpy188I	TCNGA	2 cut(s)	247, 383
Hpy188III	TCNNGA	2 cut(s)	175, 194
HpyAV	CCTTC	1 cut(s)	327
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	4 cut(s)	77, 104, 226, 282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	2 cut(s)	329, 367
Kpn2I	TCCGGA	2 cut(s)	174, 193
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	9 cut(s)	24, 81, 114, 141, 188, 207, 218, 297, 344
Lsp1109I	GCAGC	2 cut(s)	22, 210
LweI	GCATC	1 cut(s)	113
MabI	ACCWGGT	1 cut(s)	127
MaeII	ACGT	1 cut(s)	79
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MluCI	AATT	2 cut(s)	227, 248
MnlI	CCTC	3 cut(s)	105, 190, 277
Mph1103I	ATGCAT	1 cut(s)	106
MroI	TCCGGA	2 cut(s)	174, 193
MseI	TTAA	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	2 cut(s)	175, 194
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	329, 367
NlaIV	GGNNCC	2 cut(s)	133, 369
NsiI	ATGCAT	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	37, 225
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	2 cut(s)	133, 369
PspPI	GGNCC	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	2 cut(s)	36, 224
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	5 cut(s)	82, 130, 154, 313, 319
SexAI	ACCWGGT	1 cut(s)	127
SfaNI	GCATC	1 cut(s)	113
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	314
Sse9I	AATT	2 cut(s)	227, 248
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	135
TaiI	ACGT	1 cut(s)	82
TasI	AATT	2 cut(s)	227, 248
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseI	GCWGC	2 cut(s)	35, 223
TspDTI	ATGAA	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	314
XapI	RAATTY	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.