RchiOBHm_Chr1g0319261

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014817
Physical Location & Seq
Reverse (-)
6902763 .. 6903704
942 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54951

Sequence Viewer

Length: 525 bp
ATGAAGATGGTAAGGGTAAAAGTACCAGAGTTTCATGAATATGAGCCTTTGGAGGTGGAAGGCAAATCCGAGGACTGCAAGATAAAATGCCTACATAATTGTTCGTGTCTTGCTTATGCTTTTGTCGATAATATAGGTTGTTTGGTATGGTCCAAAGACCTTATTGATATACAGGAATTCCCCTCTGGTGGAGAAGATCTTTTTATCCGCCTAGCACCTCGAGGTAAAGAAAAACAAATAGAGTTAATTACCGGCCTTACAACTGTCTGTTTTATCAGCATCTTGGTTGGCATATTGTGCGCTTTGCACAGGTTGCAAGCTAATCAAATTGGAAACATCAAAGCAACAACAAGGGGACTTGAATTGACTGGTATGGTTTCAGGAAACTCTCTTCAAGACTACATAAGAAAGCATGACCTATCAGGGATATTGGTCTTTGACTTTGACAGCATAGTAATTGCAACAAACAATTTCAGCATAACAAACAAACAAACTCGGGCAAGGGGGATTTGGCCCAGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

174

Amino Acids

19.46

Weight (kDa)

6.42

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 2 - 57 1.2e-14 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 219
AciI CCGC 1 cut(s) 208
AcsI RAATTY 1 cut(s) 176
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 2 cut(s) 362, 395
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
Ama87I CYCGRG 2 cut(s) 219, 495
AoxI GGCC 2 cut(s) 253, 512
ApoI RAATTY 1 cut(s) 176
AspLEI GCGC 1 cut(s) 302
AspS9I GGNCC 2 cut(s) 150, 513
AvaI CYCGRG 2 cut(s) 219, 495
AvaII GGWCC 1 cut(s) 150
BfaI CTAG 1 cut(s) 212
BglII AGATCT 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 150
BmeT110I CYCGRG 2 cut(s) 219, 495
BmgT120I GGNCC 2 cut(s) 150, 513
BmrI ACTGGG 1 cut(s) 510
BmsI GCATC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 510
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 2 cut(s) 373, 516
BseDI CCNNGG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 188
BseNI ACTGG 2 cut(s) 373, 516
BshFI GGCC 2 cut(s) 255, 514
BsiHKCI CYCGRG 2 cut(s) 219, 495
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 369
BsnI GGCC 2 cut(s) 255, 514
BsoBI CYCGRG 2 cut(s) 219, 495
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 1 cut(s) 208
BspANI GGCC 2 cut(s) 255, 514
BspHI TCATGA 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 2 cut(s) 373, 516
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 396
BstAPI GCANNNNNTGC 2 cut(s) 297, 313
BstC8I GCNNGC 1 cut(s) 318
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 2 cut(s) 297, 313
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 2 cut(s) 255, 514
Cac8I GCNNGC 1 cut(s) 318
CciI TCATGA 1 cut(s) 34
CfoI GCGC 1 cut(s) 302
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 2 cut(s) 150, 513
Csp6I GTAC 1 cut(s) 23
CviAII CATG 2 cut(s) 35, 413
CviJI RGCY 4 cut(s) 46, 255, 320, 514
CviKI_1 RGCY 4 cut(s) 46, 255, 320, 514
CviQI GTAC 1 cut(s) 23
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
EciI GGCGGA 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 150
Eco88I CYCGRG 2 cut(s) 219, 495
EcoRI GAATTC 1 cut(s) 176
FaeI CATG 2 cut(s) 38, 416
FaqI GGGAC 1 cut(s) 369
FatI CATG 2 cut(s) 34, 412
FspBI CTAG 1 cut(s) 212
GlaI GCGC 1 cut(s) 301
HaeIII GGCC 2 cut(s) 255, 514
HapII CCGG 1 cut(s) 252
HhaI GCGC 1 cut(s) 302
Hin1II CATG 2 cut(s) 38, 416
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HpaII CCGG 1 cut(s) 252
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 3 cut(s) 35, 381, 395
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 4 cut(s) 78, 307, 316, 461
HpyF10VI GCNNNNNNNGC 2 cut(s) 297, 313
Hsp92II CATG 2 cut(s) 38, 416
HspAI GCGC 1 cut(s) 300
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 8 cut(s) 39, 158, 171, 265, 295, 354, 366, 408
LweI GCATC 1 cut(s) 288
MaeI CTAG 1 cut(s) 212
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 3 cut(s) 16, 206, 383
MflI RGATCY 1 cut(s) 196
MluCI AATT 7 cut(s) 97, 176, 246, 327, 362, 456, 469
MnlI CCTC 5 cut(s) 46, 64, 193, 215, 228
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 39
MspI CCGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 297, 313
NdeII GATC 1 cut(s) 196
NlaIII CATG 2 cut(s) 38, 416
PaeR7I CTCGAG 1 cut(s) 219
PagI TCATGA 1 cut(s) 34
PspPI GGNCC 2 cut(s) 150, 513
PspXI VCTCGAGB 1 cut(s) 219
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 39
SaqAI TTAA 1 cut(s) 245
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 2 cut(s) 150, 513
SetI ASST 8 cut(s) 57, 139, 162, 220, 226, 314, 322, 420
SfaNI GCATC 1 cut(s) 288
Sfr274I CTCGAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 150
SlaI CTCGAG 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 7 cut(s) 97, 176, 246, 327, 362, 456, 469
SsiI CCGC 1 cut(s) 208
SspMI CTAG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 2 cut(s) 126, 220
TasI AATT 7 cut(s) 97, 176, 246, 327, 362, 456, 469
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TspDTI ATGAA 3 cut(s) 17, 23, 51
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 1 cut(s) 176
XhoI CTCGAG 1 cut(s) 219
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.