Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8365119.1

Orthogroup ID

OG0014817

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 986

Gene Structure 986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8365119.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 890 bp

ctgagaattggtagcaatgggaatctggagctcatagatgggaagcagaattctgtctggtcaaccaatatttcggcgtcatctaatagttcatctgcagttcttttagacactggaaactttgtgctcaaagatgataggggagctgatttgtgggagagttttgatcacccttgtgacacactcctaccaagtcagctgctaggatttgatagtaaatctggaaagcaaaacttcttgactgcctggaaaagtgagaatgatccatcaactgggaaatatttggttggacttacacctgagacaccatcacaagtggtcatttggactaataaatcaactctgcgctggagaagtgggccatgggataaatcaaagttcatcggcgtaccagttatggatgatcggtatcaaagtggttttagtctagacgataatgtgatagagggatcaaagtatttctcctacaatttttatgactatcctatctcctatattgacatttcttcagaaggaatagcaacactcatgctttttgaaacgggcaagaattggtatcttgactgggaagcaccatatgatccatgtgacaattatggagtatgtgggccttttggggtttgcaaagcttctgaatctcatatctgcaagtgtttaaaagggtttgtaccaaagtcagatgtcgaatggacaaaaggaaactggacaagaggttgtgtaaggcaagccaaattgttctgtgatactgacataaccaactcagtctcatcaagagcaaaacaaaacaatgatgggttttggaagatggtacggttgaaagtaccagattctcatgaattagttctcacatctttggatggtgaaaacacacctgattactgcaagacacg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

297

Amino Acids

33.32

Weight (kDa)

5.1

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014817)

Species	Orthologous Gene IDs
malus_domestica	MD05G1331800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319261 RchiOBHm_Chr3g0485181 RchiOBHm_Chr5g0005271
rosa_multiflora	Rmu_co8365119.1_g000001 Rmu_sc0003574.1_g000004 Rmu_sc0005072.1_g000020
rosa_roxburghii	Rroxscaffold_7G00196510
rosa_rugosa	Rorug01G0087200 Rorug03G0199900 Rorug06G0067000
rosa_samantha	Rh1BG035300 Rh1BG035600 Rh5CG049000 Rh5CG049700 Rh5CG051700 Rh5CG051900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	272
AclWI	GGATC	3 cut(s)	257, 457, 575
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	4 cut(s)	390, 669, 810, 822
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	539, 817
AjnI	CCWGG	1 cut(s)	245
AleI	CACNNNNGTG	1 cut(s)	174
AluBI	AGCT	4 cut(s)	31, 146, 199, 629
AluI	AGCT	4 cut(s)	31, 146, 199, 629
Alw21I	GWGCWC	2 cut(s)	33, 129
Alw26I	GTCTC	2 cut(s)	296, 769
AlwI	GGATC	3 cut(s)	257, 457, 575
AoxI	GGCC	2 cut(s)	359, 608
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	840
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	359, 608
AsuHPI	GGTGA	2 cut(s)	161, 872
BanII	GRGCYC	1 cut(s)	33
Bbv12I	GWGCWC	2 cut(s)	33, 129
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	6 cut(s)	32, 274, 316, 785, 799, 851
BciT130I	CCWGG	1 cut(s)	247
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	296, 769
BfaI	CTAG	2 cut(s)	203, 428
BfmI	CTRYAG	1 cut(s)	96
BisI	GCNGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	201
Bme1390I	CCNGG	1 cut(s)	247
BmgT120I	GGNCC	2 cut(s)	359, 608
BmrFI	CCNGG	1 cut(s)	247
BmrI	ACTGGG	2 cut(s)	282, 574
BmuI	ACTGGG	2 cut(s)	282, 574
BpmI	CTGGAG	2 cut(s)	47, 370
BsaBI	GATNNNNATC	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	5 cut(s)	118, 277, 392, 569, 707
Bse3DI	GCAATG	1 cut(s)	22
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	247
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	2 cut(s)	406, 862
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMI	GCAATG	1 cut(s)	22
BseMII	CTCAG	2 cut(s)	291, 774
BseNI	ACTGG	5 cut(s)	118, 277, 392, 569, 707
BseXI	GCAGC	1 cut(s)	186
BshFI	GGCC	2 cut(s)	361, 610
BsiHKAI	GWGCWC	2 cut(s)	33, 129
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	2 cut(s)	296, 769
BsnI	GGCC	2 cut(s)	361, 610
Bsp1286I	GDGCHC	2 cut(s)	33, 129
Bsp143I	GATC	5 cut(s)	166, 262, 403, 449, 580
Bsp19I	CCATGG	1 cut(s)	362
BspANI	GGCC	2 cut(s)	361, 610
BspCNI	CTCAG	2 cut(s)	292, 773
BspHI	TCATGA	1 cut(s)	832
BspMAI	CTGCAG	1 cut(s)	100
BspPI	GGATC	3 cut(s)	257, 457, 575
BsrDI	GCAATG	1 cut(s)	22
BsrI	ACTGG	5 cut(s)	118, 277, 392, 569, 707
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	5 cut(s)	166, 262, 403, 449, 580
BssNI	GRCGYC	1 cut(s)	77
BssT1I	CCWWGG	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	813
BstACI	GRCGYC	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	726
BstDEI	CTNAG	3 cut(s)	2, 300, 760
BstDSI	CCRYGG	1 cut(s)	362
BstF5I	GGATG	2 cut(s)	406, 862
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	5 cut(s)	169, 265, 406, 452, 583
BstMAI	GTCTC	2 cut(s)	296, 769
BstMBI	GATC	5 cut(s)	166, 262, 403, 449, 580
BstNI	CCWGG	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	245
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	186
BsuRI	GGCC	2 cut(s)	361, 610
BtgI	CCRYGG	1 cut(s)	362
BtsCI	GGATG	2 cut(s)	406, 862
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	726
CciI	TCATGA	1 cut(s)	832
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	2 cut(s)	359, 608
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	4 cut(s)	389, 668, 809, 821
CviAII	CATG	4 cut(s)	363, 529, 585, 833
CviJI	RGCY	7 cut(s)	31, 146, 199, 361, 610, 629, 728
CviKI_1	RGCY	7 cut(s)	31, 146, 199, 361, 610, 629, 728
CviQI	GTAC	4 cut(s)	389, 668, 809, 821
DdeI	CTNAG	3 cut(s)	2, 300, 760
DpnI	GATC	5 cut(s)	168, 264, 405, 451, 582
DpnII	GATC	5 cut(s)	166, 262, 403, 449, 580
DraI	TTTAAA	1 cut(s)	657
Ecl136II	GAGCTC	1 cut(s)	31
Eco130I	CCWWGG	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	33
Eco53kI	GAGCTC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	492
EcoICRI	GAGCTC	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	245
EcoT14I	CCWWGG	1 cut(s)	362
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	4 cut(s)	366, 532, 588, 836
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FatI	CATG	4 cut(s)	362, 528, 584, 832
FauNDI	CATATG	1 cut(s)	577
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	200
FokI	GGATG	2 cut(s)	413, 869
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	200
FspBI	CTAG	2 cut(s)	203, 428
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	1 cut(s)	200
GsuI	CTGGAG	2 cut(s)	47, 370
HaeIII	GGCC	2 cut(s)	361, 610
HgaI	GACGC	1 cut(s)	66
HhaI	GCGC	1 cut(s)	348
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	4 cut(s)	366, 532, 588, 836
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HindIII	AAGCTT	1 cut(s)	627
HinfI	GANTC	3 cut(s)	22, 635, 827
HphI	GGTGA	2 cut(s)	161, 872
Hpy166II	GTNNAC	1 cut(s)	63
Hpy188I	TCNGA	3 cut(s)	511, 634, 679
Hpy188III	TCNNGA	7 cut(s)	26, 222, 238, 428, 560, 771, 833
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	1 cut(s)	506
HpyCH4III	ACNGT	1 cut(s)	813
HpyCH4V	TGCA	4 cut(s)	98, 624, 648, 882
HpyF3I	CTNAG	3 cut(s)	2, 300, 760
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	4 cut(s)	366, 532, 588, 836
HspAI	GCGC	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	5 cut(s)	166, 262, 403, 449, 580
LmnI	GCTCC	2 cut(s)	28, 143
Lsp1109I	GCAGC	1 cut(s)	186
MaeI	CTAG	2 cut(s)	203, 428
MaeIII	GTNAC	2 cut(s)	176, 587
MalI	GATC	5 cut(s)	168, 264, 405, 451, 582
MboI	GATC	5 cut(s)	166, 262, 403, 449, 580
MboII	GAAGA	2 cut(s)	498, 814
MhlI	GDGCHC	2 cut(s)	33, 129
MluCI	AATT	7 cut(s)	6, 49, 469, 550, 592, 731, 836
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	2 cut(s)	439, 704
MroXI	GAANNNNTTC	1 cut(s)	840
MseI	TTAA	1 cut(s)	656
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	199
MspR9I	CCNGG	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	247
NcoI	CCATGG	1 cut(s)	362
NdeI	CATATG	1 cut(s)	577
NdeII	GATC	5 cut(s)	166, 262, 403, 449, 580
NlaIII	CATG	4 cut(s)	366, 532, 588, 836
NmuCI	GTSAC	2 cut(s)	176, 587
OliI	CACNNNNGTG	1 cut(s)	174
PagI	TCATGA	1 cut(s)	832
PdmI	GAANNNNTTC	1 cut(s)	840
PfeI	GAWTC	3 cut(s)	22, 635, 827
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	245
PspPI	GGNCC	2 cut(s)	359, 608
PstI	CTGCAG	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	4 cut(s)	390, 669, 810, 822
RsaNI	GTAC	4 cut(s)	389, 668, 809, 821
RseI	CAYNNNNRTG	1 cut(s)	174
SacI	GAGCTC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	656
SatI	GCNGC	1 cut(s)	200
Sau3AI	GATC	5 cut(s)	166, 262, 403, 449, 580
Sau96I	GGNCC	2 cut(s)	359, 608
ScrFI	CCNGG	1 cut(s)	247
SduI	GDGCHC	2 cut(s)	33, 129
SetI	ASST	7 cut(s)	33, 148, 201, 301, 631, 715, 874
SfcI	CTRYAG	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	7 cut(s)	6, 49, 469, 550, 592, 731, 836
SspI	AATATT	2 cut(s)	70, 281
SspMI	CTAG	2 cut(s)	203, 428
SstI	GAGCTC	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	245
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	1 cut(s)	813
TaqI	TCGA	1 cut(s)	684
TasI	AATT	7 cut(s)	6, 49, 469, 550, 592, 731, 836
TfiI	GAWTC	3 cut(s)	22, 635, 827
Tru1I	TTAA	1 cut(s)	656
Tru9I	TTAA	1 cut(s)	656
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	2 cut(s)	176, 587
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	2 cut(s)	176, 587
TspDTI	ATGAA	3 cut(s)	81, 370, 849
TspRI	CASTG	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	272
XapI	RAATTY	1 cut(s)	49
XbaI	TCTAGA	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	840
XspI	CTAG	2 cut(s)	203, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.