Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005072.1

Orthogroup ID

OG0014817

Physical Location & Seq

Genomic Coordinates Forward (+)

113203 .. 117280

Gene Structure 4078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005072.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgcagcggaccttttgggtttgcaaagcttttgagtctcatatctgcaagtgtttgaaagggtatgtaccaaagtcagatgacgagtggagcaaaggaaactggacaggaggatgtgtaaggaaaaccaaattgttctgtgatagtgacacacgcaagtcagtctcaacgagaacaaaagaaaatgatgatgggttttggaagattataaggttaaaagtaccagattctcatgaattagttcttacaactttggatactgaaaacacgcctgatgaatgcaagatacggtgcctgaataattgttcttgcatcgcttatgcatttgttaataaaatagggtgtttggtctggtccaaagaccttattgacatacaacagttttcctttggaggagaagttctttatgttcgcctaacacaggcagagctcggtgaaggaaggccaataaagttaattgccagccttataccagattttcttgaatataagccattaaaggcagaaggcatatctgagcactgcgagttaaactgcctacttaattgttcttgccaggcttatgcttttgtcaatgatataggttgtttggtatggtccaaagaccttattgatatacaggagtttccctctggcggaatagatctttatatccgcctacccgactcagagtatgccatggcaggtagggctgggcactacaaaccgaacaaccaatcccggcggggacgggatgatgctgcaaataagccgaccatgccggaagttgctttcatgctaagcagtgagacagatgctccacaacctaagcagcctatatttgcttgtaaaagttctgtcccacagcttcaaaatagttgttccacaagtgacactaccataatagtgattttaggacgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

300

Amino Acids

33.68

Weight (kDa)

6.14

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014817)

Species	Orthologous Gene IDs
malus_domestica	MD05G1331800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319261 RchiOBHm_Chr3g0485181 RchiOBHm_Chr5g0005271
rosa_multiflora	Rmu_co8365119.1_g000001 Rmu_sc0003574.1_g000004 Rmu_sc0005072.1_g000020
rosa_roxburghii	Rroxscaffold_7G00196510
rosa_rugosa	Rorug01G0087200 Rorug03G0199900 Rorug06G0067000
rosa_samantha	Rh1BG035300 Rh1BG035600 Rh5CG049000 Rh5CG049700 Rh5CG051700 Rh5CG051900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	674
AccB1I	GGYRCC	1 cut(s)	291
AciI	CCGC	4 cut(s)	7, 636, 655, 724
AfaI	GTAC	2 cut(s)	69, 222
AfiI	CCNNNNNNNGG	2 cut(s)	421, 635
AgsI	TTSAA	3 cut(s)	58, 485, 851
AjnI	CCWGG	1 cut(s)	555
AloI	GAACNNNNNNTCC	4 cut(s)	384, 416, 701, 733
AluBI	AGCT	3 cut(s)	29, 430, 847
AluI	AGCT	3 cut(s)	29, 430, 847
Alw21I	GWGCWC	2 cut(s)	432, 522
Alw26I	GTCTC	3 cut(s)	42, 169, 782
AoxI	GGCC	1 cut(s)	443
ApeKI	GCWGC	3 cut(s)	4, 740, 811
Asp700I	GAANNNNTTC	1 cut(s)	240
AspS9I	GGNCC	3 cut(s)	9, 354, 597
AsuC2I	CCSGG	1 cut(s)	721
AsuHPI	GGTGA	1 cut(s)	446
AvaII	GGWCC	3 cut(s)	9, 354, 597
BaeGI	GKGCMC	1 cut(s)	699
BanI	GGYRCC	1 cut(s)	291
BanII	GRGCYC	1 cut(s)	432
Bbv12I	GWGCWC	2 cut(s)	432, 522
BbvI	GCAGC	3 cut(s)	16, 727, 823
BccI	CCATC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	557
BciVI	GTATCC	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	721
BcoDI	GTCTC	3 cut(s)	42, 169, 782
BfuAI	ACCTGC	1 cut(s)	674
BfuI	GTATCC	1 cut(s)	250
BglII	AGATCT	1 cut(s)	643
BisI	GCNGC	3 cut(s)	5, 741, 812
BlpI	GCTNAGC	1 cut(s)	779
BlsI	GCNGC	3 cut(s)	6, 742, 813
Bme1390I	CCNGG	2 cut(s)	557, 721
Bme18I	GGWCC	3 cut(s)	9, 354, 597
BmgT120I	GGNCC	3 cut(s)	9, 354, 597
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	2 cut(s)	557, 721
BmsI	GCATC	3 cut(s)	321, 727, 784
BplI	GAGNNNNNCTC	2 cut(s)	614, 646
Bpu10I	CCTNAGC	1 cut(s)	807
Bpu1102I	GCTNAGC	1 cut(s)	779
BpuMI	CCSGG	1 cut(s)	721
BsaJI	CCNNGG	1 cut(s)	678
BsaXI	ACNNNNNCTCC	6 cut(s)	102, 132, 384, 414, 781, 811
Bsc4I	CCNNNNNNNGG	2 cut(s)	421, 635
Bse1I	ACTGG	1 cut(s)	107
BseBI	CCWGG	1 cut(s)	557
BseDI	CCNNGG	1 cut(s)	678
BseGI	GGATG	2 cut(s)	119, 739
BseLI	CCNNNNNNNGG	2 cut(s)	421, 635
BseMII	CTCAG	2 cut(s)	507, 681
BseNI	ACTGG	1 cut(s)	107
BseRI	GAGGAG	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	699
BseXI	GCAGC	3 cut(s)	16, 727, 823
BseYI	CCCAGC	1 cut(s)	692
BshFI	GGCC	1 cut(s)	445
BshNI	GGYRCC	1 cut(s)	291
BsiHKAI	GWGCWC	2 cut(s)	432, 522
BsiSI	CCGG	2 cut(s)	721, 761
BslFI	GGGAC	2 cut(s)	741, 824
BslI	CCNNNNNNNGG	2 cut(s)	421, 635
BsmAI	GTCTC	3 cut(s)	42, 169, 782
BsmFI	GGGAC	2 cut(s)	741, 824
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	445
Bsp1286I	GDGCHC	3 cut(s)	432, 522, 699
Bsp143I	GATC	1 cut(s)	643
Bsp1720I	GCTNAGC	1 cut(s)	779
Bsp19I	CCATGG	1 cut(s)	678
BspACI	CCGC	4 cut(s)	7, 636, 655, 724
BspANI	GGCC	1 cut(s)	445
BspCNI	CTCAG	2 cut(s)	508, 680
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	293
BspMI	ACCTGC	1 cut(s)	674
BspT107I	GGYRCC	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	678
BssMI	GATC	1 cut(s)	643
BssT1I	CCWWGG	1 cut(s)	678
Bst2UI	CCWGG	1 cut(s)	557
Bst4CI	ACNGT	2 cut(s)	291, 381
BstC8I	GCNNGC	1 cut(s)	463
BstDEI	CTNAG	4 cut(s)	516, 667, 779, 807
BstDSI	CCRYGG	1 cut(s)	678
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	2 cut(s)	119, 739
BstKTI	GATC	1 cut(s)	646
BstMAI	GTCTC	3 cut(s)	42, 169, 782
BstMBI	GATC	1 cut(s)	643
BstMWI	GCNNNNNNNGC	2 cut(s)	689, 757
BstNI	CCWGG	1 cut(s)	557
BstSCI	CCNGG	2 cut(s)	555, 719
BstSLI	GKGCMC	1 cut(s)	699
BstV1I	GCAGC	3 cut(s)	16, 727, 823
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BsuI	GTATCC	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	445
BtgI	CCRYGG	1 cut(s)	678
BtgZI	GCGATG	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	119, 739
BtsI	GCAGTG	2 cut(s)	520, 790
BtsIMutI	CAGTG	2 cut(s)	520, 790
BveI	ACCTGC	1 cut(s)	674
Cac8I	GCNNGC	1 cut(s)	463
CciI	TCATGA	1 cut(s)	232
Cfr13I	GGNCC	3 cut(s)	9, 354, 597
Csp6I	GTAC	2 cut(s)	68, 221
CviAII	CATG	4 cut(s)	233, 679, 757, 775
CviQI	GTAC	2 cut(s)	68, 221
DdeI	CTNAG	4 cut(s)	516, 667, 779, 807
DpnI	GATC	1 cut(s)	645
DpnII	GATC	1 cut(s)	643
EciI	GGCGGA	2 cut(s)	644, 651
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	678
Eco24I	GRGCYC	1 cut(s)	432
Eco47I	GGWCC	3 cut(s)	9, 354, 597
Eco53kI	GAGCTC	1 cut(s)	430
EcoICRI	GAGCTC	1 cut(s)	430
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	555
EcoT14I	CCWWGG	1 cut(s)	678
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	678
FaeI	CATG	4 cut(s)	236, 682, 760, 778
FaqI	GGGAC	2 cut(s)	741, 824
FatI	CATG	4 cut(s)	232, 678, 756, 774
FauI	CCCGC	1 cut(s)	717
Fnu4HI	GCNGC	3 cut(s)	5, 741, 812
FokI	GGATG	2 cut(s)	126, 746
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	3 cut(s)	5, 741, 812
GluI	GCNGC	3 cut(s)	5, 741, 812
GsaI	CCCAGC	1 cut(s)	696
HaeIII	GGCC	1 cut(s)	445
HapII	CCGG	2 cut(s)	721, 761
Hin1II	CATG	4 cut(s)	236, 682, 760, 778
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	3 cut(s)	35, 227, 665
HpaII	CCGG	2 cut(s)	721, 761
HphI	GGTGA	1 cut(s)	446
Hpy188I	TCNGA	3 cut(s)	79, 517, 670
Hpy188III	TCNNGA	2 cut(s)	233, 482
HpyAV	CCTTC	3 cut(s)	431, 435, 500
HpyCH4III	ACNGT	2 cut(s)	291, 381
HpyCH4V	TGCA	7 cut(s)	4, 24, 48, 282, 312, 323, 743
HpyF10VI	GCNNNNNNNGC	2 cut(s)	689, 757
HpyF3I	CTNAG	4 cut(s)	516, 667, 779, 807
Hsp92II	CATG	4 cut(s)	236, 682, 760, 778
Kzo9I	GATC	1 cut(s)	643
LmnI	GCTCC	2 cut(s)	90, 802
Lsp1109I	GCAGC	3 cut(s)	16, 727, 823
LweI	GCATC	3 cut(s)	321, 727, 784
MaeIII	GTNAC	2 cut(s)	146, 869
MalI	GATC	1 cut(s)	645
MboI	GATC	1 cut(s)	643
MboII	GAAGA	1 cut(s)	214
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	3 cut(s)	432, 522, 699
MluCI	AATT	5 cut(s)	131, 236, 301, 456, 544
MlyI	GAGTC	2 cut(s)	44, 659
MnlI	CCTC	3 cut(s)	104, 386, 640
Mph1103I	ATGCAT	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	6 cut(s)	215, 330, 455, 497, 530, 543
MslI	CAYNNNNRTG	1 cut(s)	884
MspA1I	CMGCKG	1 cut(s)	7
MspI	CCGG	2 cut(s)	721, 761
MspR9I	CCNGG	2 cut(s)	557, 721
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	557
MwoI	GCNNNNNNNGC	2 cut(s)	689, 757
NciI	CCSGG	1 cut(s)	721
NcoI	CCATGG	1 cut(s)	678
NdeII	GATC	1 cut(s)	643
NlaIII	CATG	4 cut(s)	236, 682, 760, 778
NlaIV	GGNNCC	1 cut(s)	293
NmuCI	GTSAC	2 cut(s)	146, 869
NsiI	ATGCAT	1 cut(s)	325
PagI	TCATGA	1 cut(s)	232
PctI	GAATGC	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	3 cut(s)	6, 742, 813
PleI	GAGTC	2 cut(s)	43, 659
PpsI	GAGTC	2 cut(s)	43, 659
PsiI	TTATAA	1 cut(s)	209
Psp124BI	GAGCTC	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	555
PspFI	CCCAGC	1 cut(s)	692
PspGI	CCWGG	1 cut(s)	555
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	3 cut(s)	9, 354, 597
PsuI	RGATCY	1 cut(s)	643
RsaI	GTAC	2 cut(s)	69, 222
RsaNI	GTAC	2 cut(s)	68, 221
RseI	CAYNNNNRTG	1 cut(s)	884
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	6 cut(s)	215, 330, 455, 497, 530, 543
SatI	GCNGC	3 cut(s)	5, 741, 812
Sau3AI	GATC	1 cut(s)	643
Sau96I	GGNCC	3 cut(s)	9, 354, 597
SchI	GAGTC	2 cut(s)	44, 659
ScrFI	CCNGG	2 cut(s)	557, 721
SduI	GDGCHC	3 cut(s)	432, 522, 699
SfaNI	GCATC	3 cut(s)	321, 727, 784
SinI	GGWCC	3 cut(s)	9, 354, 597
SmiMI	CAYNNNNRTG	1 cut(s)	884
Sse9I	AATT	5 cut(s)	131, 236, 301, 456, 544
SsiI	CCGC	4 cut(s)	7, 636, 655, 724
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	2 cut(s)	555, 719
StyI	CCWWGG	1 cut(s)	678
TaaI	ACNGT	2 cut(s)	291, 381
TasI	AATT	5 cut(s)	131, 236, 301, 456, 544
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	6 cut(s)	215, 330, 455, 497, 530, 543
Tru9I	TTAA	6 cut(s)	215, 330, 455, 497, 530, 543
TscAI	CASTG	2 cut(s)	527, 790
TseFI	GTSAC	2 cut(s)	146, 869
TseI	GCWGC	3 cut(s)	4, 740, 811
Tsp45I	GTSAC	2 cut(s)	146, 869
TspDTI	ATGAA	3 cut(s)	249, 291, 763
TspRI	CASTG	2 cut(s)	527, 790
VpaK11BI	GGWCC	3 cut(s)	9, 354, 597
XagI	CCTNNNNNAGG	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	240
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.