Rh5CG051700

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014817
Physical Location & Seq
Reverse (-)
3708986 .. 3709791
806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG051700.1

Sequence Viewer

Length: 576 bp
ATGAGTAAGTCAGTTTCACTAAAAGAAGAAGAAGATAAGTTTGAGAAGATGGTAATGGTGAAAGTACCAGATTTTCATGAATATAAGCCATTTAAGGCAGAAGGCACATCTGAGCACTGCGAGTTAATATGCATACATAATTTTTCTTGCCTGGCTTATGCTTTTGTCAATGATATAGGTTGTTTGGTATGGTCCAAAGACCTTATTGATATACAGGAGTTTCCCTCTGGCGGAGTAGATCTTTTTATCCGCCTAGCCAACTCAGGTGATATTGGAAACCAAGTAAGGTTAACTGCCAGCCTTGCAGCTATTTGTTTTATCAGTATCTTGGCTGTCATACTGTTTGGTTTGCATAGGTTGCTCGCTAACCAAATTGGAGGCATCAAAGCAACAACAAGGTGCCTTAGATTGACTGATAAAGTCCAGACGTCAGGAAACTCTCTTCAAGAATACATGAGGAAGCATGATCTATCAGAGCTATTAATCTTTAACTTTGACAGCATATTGATTGCTACATCAATTTCAGCATCACAAACAAACTCGGGGAAGGAGGCTTTGGCCCGGTTTATAGGGTGA

Protein Analysis

191

Amino Acids

21.17

Weight (kDa)

5.95

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 9 - 71 3.9e-14 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 431
AccB1I GGYRCC 1 cut(s) 399
AciI CCGC 2 cut(s) 231, 250
AcyI GRCGYC 1 cut(s) 428
AfaI GTAC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 1 cut(s) 446
AjnI CCWGG 1 cut(s) 150
AjuI GAANNNNNNNTTGG 2 cut(s) 539, 571
AluBI AGCT 2 cut(s) 308, 478
AluI AGCT 2 cut(s) 308, 478
Alw21I GWGCWC 1 cut(s) 117
Ama87I CYCGRG 1 cut(s) 541
AoxI GGCC 1 cut(s) 558
ApeKI GCWGC 1 cut(s) 305
AseI ATTAAT 1 cut(s) 482
AspS9I GGNCC 2 cut(s) 192, 559
AsuC2I CCSGG 1 cut(s) 562
AsuHPI GGTGA 2 cut(s) 70, 278
AvaI CYCGRG 1 cut(s) 541
AvaII GGWCC 1 cut(s) 192
BanI GGYRCC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 317
BccI CCATC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 152
BcnI CCSGG 1 cut(s) 562
BfaI CTAG 1 cut(s) 254
BglII AGATCT 1 cut(s) 238
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
Bme1390I CCNGG 2 cut(s) 152, 562
Bme18I GGWCC 1 cut(s) 192
BmeT110I CYCGRG 1 cut(s) 541
BmgT120I GGNCC 2 cut(s) 192, 559
BmiI GGNNCC 1 cut(s) 401
BmrFI CCNGG 2 cut(s) 152, 562
BmsI GCATC 2 cut(s) 390, 536
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpuMI CCSGG 1 cut(s) 562
BsaHI GRCGYC 1 cut(s) 428
Bsc4I CCNNNNNNNGG 1 cut(s) 230
BseBI CCWGG 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 2 cut(s) 102, 276
BseXI GCAGC 1 cut(s) 317
BshFI GGCC 1 cut(s) 560
BshNI GGYRCC 1 cut(s) 399
BsiHKAI GWGCWC 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 541
BsiSI CCGG 1 cut(s) 562
BslI CCNNNNNNNGG 1 cut(s) 230
BsnI GGCC 1 cut(s) 560
BsoBI CYCGRG 1 cut(s) 541
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 2 cut(s) 238, 466
BspACI CCGC 2 cut(s) 231, 250
BspANI GGCC 1 cut(s) 560
BspCNI CTCAG 2 cut(s) 103, 275
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 401
BspT107I GGYRCC 1 cut(s) 399
BssMI GATC 2 cut(s) 238, 466
BssNI GRCGYC 1 cut(s) 428
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 447
BstACI GRCGYC 1 cut(s) 428
BstAPI GCANNNNNTGC 1 cut(s) 358
BstC8I GCNNGC 2 cut(s) 298, 363
BstDEI CTNAG 3 cut(s) 111, 262, 404
BstKTI GATC 2 cut(s) 241, 469
BstMBI GATC 2 cut(s) 238, 466
BstMWI GCNNNNNNNGC 2 cut(s) 302, 358
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 150, 560
BstV1I GCAGC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 1 cut(s) 560
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 1 cut(s) 115
Cac8I GCNNGC 2 cut(s) 298, 363
CciI TCATGA 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 192, 559
Csp6I GTAC 1 cut(s) 65
CviAII CATG 3 cut(s) 77, 454, 464
CviJI RGCY 9 cut(s) 88, 155, 257, 300, 308, 332, 478, 554, 560
CviKI_1 RGCY 9 cut(s) 88, 155, 257, 300, 308, 332, 478, 554, 560
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 3 cut(s) 111, 262, 404
DpnI GATC 2 cut(s) 240, 468
DpnII GATC 2 cut(s) 238, 466
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
EciI GGCGGA 2 cut(s) 239, 246
Eco47I GGWCC 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 541
EcoRII CCWGG 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 134
FaeI CATG 3 cut(s) 80, 457, 467
FatI CATG 3 cut(s) 76, 453, 463
Fnu4HI GCNGC 1 cut(s) 306
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 1 cut(s) 254
GluI GCNGC 1 cut(s) 306
HaeIII GGCC 1 cut(s) 560
HapII CCGG 1 cut(s) 562
Hin1I GRCGYC 1 cut(s) 428
Hin1II CATG 3 cut(s) 80, 457, 467
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HpaI GTTAAC 1 cut(s) 291
HpaII CCGG 1 cut(s) 562
HphI GGTGA 2 cut(s) 70, 278
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 2 cut(s) 112, 475
Hpy188III TCNNGA 4 cut(s) 77, 424, 432, 446
Hpy8I GTNNAC 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 95, 541
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4IV ACGT 1 cut(s) 428
HpyCH4V TGCA 3 cut(s) 132, 305, 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 358
HpyF3I CTNAG 3 cut(s) 111, 262, 404
HpySE526I ACGT 1 cut(s) 428
Hsp92I GRCGYC 1 cut(s) 428
Hsp92II CATG 3 cut(s) 80, 457, 467
KspAI GTTAAC 1 cut(s) 291
Kzo9I GATC 2 cut(s) 238, 466
LpnPI CCDG 9 cut(s) 81, 137, 164, 200, 213, 249, 310, 417, 437
Lsp1109I GCAGC 1 cut(s) 317
LweI GCATC 2 cut(s) 390, 536
MaeI CTAG 1 cut(s) 254
MaeII ACGT 1 cut(s) 428
MalI GATC 2 cut(s) 240, 468
MboI GATC 2 cut(s) 238, 466
MboII GAAGA 5 cut(s) 38, 41, 44, 58, 434
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 3 cut(s) 139, 372, 519
MnlI CCTC 4 cut(s) 235, 371, 450, 544
Mph1103I ATGCAT 1 cut(s) 134
MseI TTAA 5 cut(s) 93, 125, 290, 482, 489
MspI CCGG 1 cut(s) 562
MspR9I CCNGG 2 cut(s) 152, 562
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 2 cut(s) 302, 358
NciI CCSGG 1 cut(s) 562
NdeII GATC 2 cut(s) 238, 466
NlaIII CATG 3 cut(s) 80, 457, 467
NlaIV GGNNCC 1 cut(s) 401
NsiI ATGCAT 1 cut(s) 134
PagI TCATGA 1 cut(s) 76
PkrI GCNGC 1 cut(s) 307
PshBI ATTAAT 1 cut(s) 482
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 401
PspPI GGNCC 2 cut(s) 192, 559
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SaqAI TTAA 5 cut(s) 93, 125, 290, 482, 489
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 2 cut(s) 238, 466
Sau96I GGNCC 2 cut(s) 192, 559
ScrFI CCNGG 2 cut(s) 152, 562
SduI GDGCHC 1 cut(s) 117
SetI ASST 9 cut(s) 181, 204, 268, 290, 310, 359, 401, 431, 480
SfaNI GCATC 2 cut(s) 390, 536
SinI GGWCC 1 cut(s) 192
Sse9I AATT 3 cut(s) 139, 372, 519
SsiI CCGC 2 cut(s) 231, 250
SspMI CTAG 1 cut(s) 254
StyD4I CCNGG 2 cut(s) 150, 560
TaaI ACNGT 1 cut(s) 342
TaiI ACGT 1 cut(s) 431
TasI AATT 3 cut(s) 139, 372, 519
Tru1I TTAA 5 cut(s) 93, 125, 290, 482, 489
Tru9I TTAA 5 cut(s) 93, 125, 290, 482, 489
TscAI CASTG 1 cut(s) 122
TseI GCWGC 1 cut(s) 305
TspDTI ATGAA 2 cut(s) 65, 93
TspRI CASTG 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 192
VspI ATTAAT 1 cut(s) 482
XspI CTAG 1 cut(s) 254
ZraI GACGTC 1 cut(s) 429
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.