Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003574.1

Orthogroup ID

OG0014817

Physical Location & Seq

Genomic Coordinates Forward (+)

26774 .. 27201

Gene Structure 428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003574.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgacaggggcaaaagtgccagattatcatcagtatattacatctttgaatactcatgacattaatggcggcaagatacagtgcctaaataattgttcttgcctggcttatgcactcattaataacattgggtgtttggtctggtccaaagaccttctagatatatcggagttctcccagggaggtgttgatctttataatcgcctagcacgcaaagaactaggtgaaggaaagccaattaagttgattgtcatccttacagctattggtttaacgattatcttggttgccatactgatcggtttgcacaaattgcgagctaaccaaatgggtaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

112

Amino Acids

12.24

Weight (kDa)

8.73

Isoelectric Point (pI)

25.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014817)

Species	Orthologous Gene IDs
malus_domestica	MD05G1331800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319261 RchiOBHm_Chr3g0485181 RchiOBHm_Chr5g0005271
rosa_multiflora	Rmu_co8365119.1_g000001 Rmu_sc0003574.1_g000004 Rmu_sc0005072.1_g000020
rosa_roxburghii	Rroxscaffold_7G00196510
rosa_rugosa	Rorug01G0087200 Rorug03G0199900 Rorug06G0067000
rosa_samantha	Rh1BG035300 Rh1BG035600 Rh5CG049000 Rh5CG049700 Rh5CG051700 Rh5CG051900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AciI	CCGC	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	102, 177
AluBI	AGCT	2 cut(s)	263, 320
AluI	AGCT	2 cut(s)	263, 320
AseI	ATTAAT	2 cut(s)	63, 120
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	144
BciT130I	CCWGG	2 cut(s)	104, 179
BfaI	CTAG	3 cut(s)	158, 206, 221
BisI	GCNGC	1 cut(s)	70
BlsI	GCNGC	1 cut(s)	71
Bme1390I	CCNGG	2 cut(s)	104, 179
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	144
BmrFI	CCNGG	2 cut(s)	104, 179
BsaBI	GATNNNNATC	2 cut(s)	27, 251
BsaJI	CCNNGG	2 cut(s)	177, 178
Bse8I	GATNNNNATC	2 cut(s)	27, 251
BseBI	CCWGG	2 cut(s)	104, 179
BseDI	CCNNGG	2 cut(s)	177, 178
BseGI	GGATG	1 cut(s)	252
BseJI	GATNNNNATC	2 cut(s)	27, 251
Bsp143I	GATC	2 cut(s)	190, 297
BspACI	CCGC	1 cut(s)	69
BspHI	TCATGA	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	177, 178
BssMI	GATC	2 cut(s)	190, 297
Bst2UI	CCWGG	2 cut(s)	104, 179
Bst4CI	ACNGT	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	313
BstC8I	GCNNGC	2 cut(s)	211, 318
BstF5I	GGATG	1 cut(s)	252
BstKTI	GATC	2 cut(s)	193, 300
BstMBI	GATC	2 cut(s)	190, 297
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 313
BstNI	CCWGG	2 cut(s)	104, 179
BstSCI	CCNGG	2 cut(s)	102, 177
BtsCI	GGATG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	86
Cac8I	GCNNGC	2 cut(s)	211, 318
CciI	TCATGA	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	144
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	4 cut(s)	107, 235, 263, 320
CviKI_1	RGCY	4 cut(s)	107, 235, 263, 320
DpnI	GATC	2 cut(s)	192, 299
DpnII	GATC	2 cut(s)	190, 297
Eco47I	GGWCC	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	102, 177
FaeI	CATG	1 cut(s)	59
FaiI	YATR	6 cut(s)	36, 57, 111, 164, 198, 293
FatI	CATG	1 cut(s)	55
Fnu4HI	GCNGC	1 cut(s)	70
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	70
FspBI	CTAG	3 cut(s)	158, 206, 221
GluI	GCNGC	1 cut(s)	70
Hin1II	CATG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	236
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	56, 158
HpyAV	CCTTC	2 cut(s)	164, 221
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	113, 307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 313
Hsp92II	CATG	1 cut(s)	59
Kzo9I	GATC	2 cut(s)	190, 297
LpnPI	CCDG	6 cut(s)	33, 89, 116, 127, 164, 191
MaeI	CTAG	3 cut(s)	158, 206, 221
MalI	GATC	2 cut(s)	192, 299
MboI	GATC	2 cut(s)	190, 297
MluCI	AATT	3 cut(s)	91, 237, 311
MnlI	CCTC	1 cut(s)	176
MseI	TTAA	4 cut(s)	63, 120, 240, 272
MspR9I	CCNGG	2 cut(s)	104, 179
MvaI	CCWGG	2 cut(s)	104, 179
MwoI	GCNNNNNNNGC	2 cut(s)	210, 313
NdeII	GATC	2 cut(s)	190, 297
NlaIII	CATG	1 cut(s)	59
PagI	TCATGA	1 cut(s)	55
PasI	CCCWGGG	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	71
PshBI	ATTAAT	2 cut(s)	63, 120
PsiI	TTATAA	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	102, 177
PspGI	CCWGG	2 cut(s)	102, 177
PspPI	GGNCC	1 cut(s)	144
SaqAI	TTAA	4 cut(s)	63, 120, 240, 272
SatI	GCNGC	1 cut(s)	70
Sau3AI	GATC	2 cut(s)	190, 297
Sau96I	GGNCC	1 cut(s)	144
ScrFI	CCNGG	2 cut(s)	104, 179
SetI	ASST	5 cut(s)	156, 187, 226, 265, 322
SinI	GGWCC	1 cut(s)	144
Sse9I	AATT	3 cut(s)	91, 237, 311
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	3 cut(s)	158, 206, 221
StyD4I	CCNGG	2 cut(s)	102, 177
TaaI	ACNGT	1 cut(s)	81
TasI	AATT	3 cut(s)	91, 237, 311
TauI	GCSGC	1 cut(s)	72
Tru1I	TTAA	4 cut(s)	63, 120, 240, 272
Tru9I	TTAA	4 cut(s)	63, 120, 240, 272
TscAI	CASTG	1 cut(s)	86
TspRI	CASTG	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	144
VspI	ATTAAT	2 cut(s)	63, 120
XbaI	TCTAGA	1 cut(s)	157
XspI	CTAG	3 cut(s)	158, 206, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.