Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010596

Physical Location & Seq

Genomic Coordinates Reverse (-)

5159354 .. 5160109

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1039600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGACAGGTTTTTTCATGCATAAATCTAATCTAATGCTAATAACAATAGTAATGTGCAAACTGGAAGACATCCTTTTGGAGATGGATCGCATTTTGCGGCCTGAAGGGACAGTCATCTTCAGGGATGAAGTCGATGTTCTGAACAAGGTTAGGAAGATTGTCGGGGGCATGAGATGGGATACCAAAATTATGGATCACGAGGACGGACCCCTTGTTCCTGAGAAGATATTGGTGGTCGTTAAACAGTACTGGGTTGCCGGCAGTGGAAACAGCACATCCAATGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009505 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0030312 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

97

Amino Acids

11.01

Weight (kDa)

5.34

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	5 - 81	7.6e-22	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010596)

Species	Orthologous Gene IDs
malus_domestica	MD06G1039600.v1.1 MD13G1215200.v1.1
prunus_persica	Prupe.5G045100_v2.0.a1
pyrus_communis	pycom05g00430 pycom07g24350 pycom15g02370 pycom16g23870
rosa_chinensis	RchiOBHm_Chr4g0393521
rosa_laevigata	RLG00000006414 RLG00000007546 RLG00000009741 RLG00000012464
rosa_multiflora	Rmu_co8388373.1_g000001 Rmu_sc0004469.1_g000016 Rmu_sc0004884.1_g000002 Rmu_sc0006171.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086270 Rroxscaffold_3G00253570
rosa_samantha	Rh4BG043800 Rh5DG486700 Rh6CG274800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	2 cut(s)	93, 201
AcuI	CTGAAG	2 cut(s)	103, 123
AfaI	GTAC	1 cut(s)	248
AloI	GAACNNNNNNTCC	2 cut(s)	198, 230
AlwI	GGATC	2 cut(s)	93, 201
AoxI	GGCC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	206
BauI	CACGAG	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	72
BccI	CCATC	2 cut(s)	76, 168
BciVI	GTATCC	1 cut(s)	172
BfuI	GTATCC	1 cut(s)	172
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
BmcAI	AGTACT	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	208
BmrI	ACTGGG	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	259
BpiI	GAAGAC	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	257
Bse1I	ACTGG	2 cut(s)	66, 254
BseGI	GGATG	3 cut(s)	69, 130, 275
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	2 cut(s)	66, 254
BshFI	GGCC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	85, 193
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	208
BspPI	GGATC	2 cut(s)	93, 201
BsrFI	RCCGGY	1 cut(s)	257
BsrI	ACTGG	2 cut(s)	66, 254
BssAI	RCCGGY	1 cut(s)	257
BssMI	GATC	2 cut(s)	85, 193
BssSI	CACGAG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	197
Bst4CI	ACNGT	2 cut(s)	112, 246
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	69, 130, 275
BstKTI	GATC	2 cut(s)	88, 196
BstMBI	GATC	2 cut(s)	85, 193
BstV2I	GAAGAC	1 cut(s)	72
BstXI	CCANNNNNNTGG	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	100
BtsCI	GGATG	3 cut(s)	69, 130, 275
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	247
CviAII	CATG	2 cut(s)	16, 169
CviJI	RGCY	1 cut(s)	100
CviKI_1	RGCY	1 cut(s)	100
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	2 cut(s)	87, 195
DpnII	GATC	2 cut(s)	85, 193
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	2 cut(s)	103, 123
EcoT22I	ATGCAT	1 cut(s)	21
FaeI	CATG	2 cut(s)	19, 172
FaiI	YATR	4 cut(s)	17, 21, 170, 191
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	2 cut(s)	15, 168
Fnu4HI	GCNGC	1 cut(s)	98
FokI	GGATG	3 cut(s)	56, 137, 262
Fsp4HI	GCNGC	1 cut(s)	98
GluI	GCNGC	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	1 cut(s)	258
Hin1II	CATG	2 cut(s)	19, 172
HpaII	CCGG	1 cut(s)	258
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	2 cut(s)	197, 218
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	2 cut(s)	112, 246
HpyCH4V	TGCA	2 cut(s)	19, 57
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	2 cut(s)	19, 172
KroI	GCCGGC	1 cut(s)	257
KroNI	GCCGGC	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	85, 193
LpnPI	CCDG	6 cut(s)	47, 106, 114, 231, 235, 271
MalI	GATC	2 cut(s)	87, 195
MboI	GATC	2 cut(s)	85, 193
MboII	GAAGA	4 cut(s)	77, 109, 166, 235
MluCI	AATT	1 cut(s)	186
MnlI	CCTC	1 cut(s)	193
Mph1103I	ATGCAT	1 cut(s)	21
MroNI	GCCGGC	1 cut(s)	257
MseI	TTAA	1 cut(s)	240
MspI	CCGG	1 cut(s)	258
NaeI	GCCGGC	1 cut(s)	259
NdeII	GATC	2 cut(s)	85, 193
NgoMIV	GCCGGC	1 cut(s)	257
NlaIII	CATG	2 cut(s)	19, 172
NlaIV	GGNNCC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	21
PdiI	GCCGGC	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	2 cut(s)	85, 193
Sau96I	GGNCC	1 cut(s)	206
ScaI	AGTACT	1 cut(s)	248
SetI	ASST	2 cut(s)	10, 150
SinI	GGWCC	1 cut(s)	206
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	1 cut(s)	97
TaaI	ACNGT	2 cut(s)	112, 246
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	186
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	1 cut(s)	100
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	4, 141
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	206
ZrmI	AGTACT	1 cut(s)	248
Zsp2I	ATGCAT	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.