Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010596

Physical Location & Seq

Genomic Coordinates Forward (+)

19044356 .. 19045834

Gene Structure 1479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012464

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTCAAACAATACTGTACTGTTGAAGAGATTATCATGTTGCATGCACAAAGAAATCAACTGTCTGATGTCTGCTCTGCCAGTATCTGCATATGCAAAGATACAGATGTACAAAGGCATGGAAGTATGGCAGCAAAGAGTTGACAATTACTGGAATCTTTTGAGCCCAAAGATTAATCCTGACACAGTGAGAAATGTGATGGACATGAAGGCACACATGGGTTCATTTGCAGCTTCTTTAAGGAACAAACCTGTTTGGGTTATGAATGTGGTGCCAGAAGATGGACCTAACACACTGAAAATAATATATGATAGAGGCCTTATAGGCTCAATACACAGCTGGTGTGAAGCCTACTCAACCTACCCGAGAACTTATGATCTACTTCATGCTTGGACCGTCTTCTCTGATGTTGAAAGGAAAGGATGTAGTGCCGTTGACTTGATGATTGAGATGGATCGCATCCTCCGGCCCAAAGGTTTCATCATTGTCCGTGATAAGCCGAGGGTAGTGGAGTACATTAAAAAATACATGAAGGCATTACACTGGGAAGCAGTGGCCGGTGCTGATGCAGACCAAGATGAGGATGATGCAGTGTTGATTATTCAGAAAAAGATTTGGCGTACAAGCGAGAGCGTTAGGGAGTTAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

217

Amino Acids

24.97

Weight (kDa)

8.21

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	28 - 203	6.2e-71	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010596)

Species	Orthologous Gene IDs
malus_domestica	MD06G1039600.v1.1 MD13G1215200.v1.1
prunus_persica	Prupe.5G045100_v2.0.a1
pyrus_communis	pycom05g00430 pycom07g24350 pycom15g02370 pycom16g23870
rosa_chinensis	RchiOBHm_Chr4g0393521
rosa_laevigata	RLG00000006414 RLG00000007546 RLG00000009741 RLG00000012464
rosa_multiflora	Rmu_co8388373.1_g000001 Rmu_sc0004469.1_g000016 Rmu_sc0004884.1_g000002 Rmu_sc0006171.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086270 Rroxscaffold_3G00253570
rosa_samantha	Rh4BG043800 Rh5DG486700 Rh6CG274800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	271
AccB7I	CCANNNNNTGG	1 cut(s)	281
AclWI	GGATC	1 cut(s)	462
AcoI	YGGCCR	1 cut(s)	555
AfaI	GTAC	4 cut(s)	18, 110, 515, 622
AfiI	CCNNNNNNNGG	2 cut(s)	281, 580
AgsI	TTSAA	2 cut(s)	25, 413
AluBI	AGCT	2 cut(s)	233, 339
AluI	AGCT	2 cut(s)	233, 339
AlwI	GGATC	1 cut(s)	462
AlwNI	CAGNNNCTG	1 cut(s)	86
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	3 cut(s)	316, 467, 555
ApeKI	GCWGC	2 cut(s)	130, 230
AseI	ATTAAT	1 cut(s)	174
AspS9I	GGNCC	3 cut(s)	284, 393, 468
AvaI	CYCGRG	1 cut(s)	364
AvaII	GGWCC	2 cut(s)	284, 393
BaeI	ACNNNNGTAYC	2 cut(s)	92, 125
BanI	GGYRCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	391
BbvI	GCAGC	2 cut(s)	142, 242
BccI	CCATC	3 cut(s)	193, 275, 445
BceAI	ACGGC	1 cut(s)	416
BglI	GCCNNNNNGGC	1 cut(s)	324
BisI	GCNGC	2 cut(s)	131, 231
BlsI	GCNGC	2 cut(s)	132, 232
Bme18I	GGWCC	2 cut(s)	284, 393
BmeT110I	CYCGRG	1 cut(s)	364
BmgT120I	GGNCC	3 cut(s)	284, 393, 468
BmiI	GGNNCC	1 cut(s)	273
BmrI	ACTGGG	1 cut(s)	553
BmsI	GCATC	3 cut(s)	468, 556, 577
BmuI	ACTGGG	1 cut(s)	553
BpiI	GAAGAC	1 cut(s)	391
BsaJI	CCNNGG	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 580
Bse118I	RCCGGY	1 cut(s)	557
Bse1I	ACTGG	3 cut(s)	80, 155, 548
BseDI	CCNNGG	1 cut(s)	500
BseGI	GGATG	3 cut(s)	428, 459, 589
BseLI	CCNNNNNNNGG	2 cut(s)	281, 580
BseNI	ACTGG	3 cut(s)	80, 155, 548
BseXI	GCAGC	2 cut(s)	142, 242
BshFI	GGCC	3 cut(s)	318, 469, 557
BshNI	GGYRCC	1 cut(s)	271
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	466, 558
BslI	CCNNNNNNNGG	2 cut(s)	281, 580
BsnI	GGCC	3 cut(s)	318, 469, 557
BsoBI	CYCGRG	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	376, 454
BspANI	GGCC	3 cut(s)	318, 469, 557
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	462
BspT107I	GGYRCC	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	557
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	3 cut(s)	80, 155, 548
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	1 cut(s)	500
BssMI	GATC	2 cut(s)	376, 454
Bst4CI	ACNGT	5 cut(s)	16, 21, 62, 187, 397
Bst6I	CTCTTC	1 cut(s)	20
BstAUI	TGTACA	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	44
BstF5I	GGATG	3 cut(s)	428, 459, 589
BstKTI	GATC	2 cut(s)	379, 457
BstMBI	GATC	2 cut(s)	376, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstNSI	RCATGY	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	142, 242
BstV2I	GAAGAC	1 cut(s)	391
BsuRI	GGCC	3 cut(s)	318, 469, 557
BtsCI	GGATG	3 cut(s)	428, 459, 589
BtsI	GCAGTG	2 cut(s)	558, 597
BtsIMutI	CAGTG	5 cut(s)	192, 293, 541, 558, 597
Cac8I	GCNNGC	1 cut(s)	44
CaiI	CAGNNNCTG	1 cut(s)	86
Cfr10I	RCCGGY	1 cut(s)	557
Cfr13I	GGNCC	3 cut(s)	284, 393, 468
Csp6I	GTAC	4 cut(s)	17, 109, 514, 621
CviAII	CATG	7 cut(s)	36, 43, 118, 205, 217, 386, 529
CviJI	RGCY	9 cut(s)	165, 233, 318, 327, 339, 350, 469, 499, 557
CviKI_1	RGCY	9 cut(s)	165, 233, 318, 327, 339, 350, 469, 499, 557
CviQI	GTAC	4 cut(s)	17, 109, 514, 621
DpnI	GATC	2 cut(s)	378, 456
DpnII	GATC	2 cut(s)	376, 454
EaeI	YGGCCR	1 cut(s)	555
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	167
Eco47I	GGWCC	2 cut(s)	284, 393
Eco88I	CYCGRG	1 cut(s)	364
EcoT38I	GRGCYC	1 cut(s)	167
FaeI	CATG	7 cut(s)	39, 46, 121, 208, 220, 389, 532
FatI	CATG	7 cut(s)	35, 42, 117, 204, 216, 385, 528
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	131, 231
FokI	GGATG	3 cut(s)	435, 446, 596
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	131, 231
GluI	GCNGC	2 cut(s)	131, 231
HaeIII	GGCC	3 cut(s)	318, 469, 557
HapII	CCGG	2 cut(s)	466, 558
Hin1II	CATG	7 cut(s)	39, 46, 121, 208, 220, 389, 532
HincII	GTYRAC	2 cut(s)	142, 436
HindII	GTYRAC	2 cut(s)	142, 436
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	2 cut(s)	466, 558
Hpy166II	GTNNAC	2 cut(s)	142, 436
Hpy188I	TCNGA	3 cut(s)	66, 406, 606
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	2 cut(s)	142, 436
HpyAV	CCTTC	2 cut(s)	202, 526
HpyCH4III	ACNGT	5 cut(s)	16, 21, 62, 187, 397
HpyCH4V	TGCA	7 cut(s)	42, 46, 89, 95, 230, 569, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
Hsp92II	CATG	7 cut(s)	39, 46, 121, 208, 220, 389, 532
Kzo9I	GATC	2 cut(s)	376, 454
LpnPI	CCDG	9 cut(s)	93, 136, 192, 264, 288, 325, 479, 529, 571
Lsp1109I	GCAGC	2 cut(s)	142, 242
LweI	GCATC	3 cut(s)	468, 556, 577
MalI	GATC	2 cut(s)	378, 456
MboI	GATC	2 cut(s)	376, 454
MboII	GAAGA	3 cut(s)	37, 290, 391
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	1 cut(s)	145
MnlI	CCTC	4 cut(s)	308, 473, 495, 574
MseI	TTAA	3 cut(s)	174, 239, 519
MspA1I	CMGCKG	1 cut(s)	339
MspI	CCGG	2 cut(s)	466, 558
MwoI	GCNNNNNNNGC	1 cut(s)	324
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	2 cut(s)	376, 454
NlaIII	CATG	7 cut(s)	39, 46, 121, 208, 220, 389, 532
NlaIV	GGNNCC	1 cut(s)	273
NmeAIII	GCCGAG	1 cut(s)	525
NspI	RCATGY	1 cut(s)	46
PaeI	GCATGC	1 cut(s)	46
PceI	AGGCCT	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	154
PflMI	CCANNNNNTGG	1 cut(s)	281
PkrI	GCNGC	2 cut(s)	132, 232
PshBI	ATTAAT	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	3 cut(s)	284, 393, 468
PstNI	CAGNNNCTG	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	339
RsaI	GTAC	4 cut(s)	18, 110, 515, 622
RsaNI	GTAC	4 cut(s)	17, 109, 514, 621
SaqAI	TTAA	3 cut(s)	174, 239, 519
SatI	GCNGC	2 cut(s)	131, 231
Sau3AI	GATC	2 cut(s)	376, 454
Sau96I	GGNCC	3 cut(s)	284, 393, 468
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	6 cut(s)	235, 253, 289, 341, 362, 478
SfaNI	GCATC	3 cut(s)	468, 556, 577
SinI	GGWCC	2 cut(s)	284, 393
SphI	GCATGC	1 cut(s)	46
Sse9I	AATT	1 cut(s)	145
SseBI	AGGCCT	1 cut(s)	318
StuI	AGGCCT	1 cut(s)	318
TaaI	ACNGT	5 cut(s)	16, 21, 62, 187, 397
TasI	AATT	1 cut(s)	145
TatI	WGTACW	3 cut(s)	16, 108, 513
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	3 cut(s)	174, 239, 519
Tru9I	TTAA	3 cut(s)	174, 239, 519
TscAI	CASTG	5 cut(s)	192, 300, 548, 558, 597
TseI	GCWGC	2 cut(s)	130, 230
TspDTI	ATGAA	6 cut(s)	213, 221, 278, 374, 469, 545
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	5 cut(s)	192, 300, 548, 558, 597
Van91I	CCANNNNNTGG	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	284, 393
VspI	ATTAAT	1 cut(s)	174
XceI	RCATGY	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.