Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010596

Physical Location & Seq

Genomic Coordinates Forward (+)

25108168 .. 25114729

Gene Structure 6562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g23870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAATGTTGTGCCTACAATTGCTAAGAATACTTTAGGTGTTATTTATGAGAGAGGTCTAATCGGCATATATCATGACTGGTGTGAAGGCTTTTCTACGTACCCAAGGTCATATGACCTTATTCATGCTAGCGGTGTTTTCAGCTTGTACAAGAACGAGTGCAAACTGGAAGACATCCTTTTGGAGATGGATCGCATTTTGCAGCCAGAAGGGACAGTCATCTTCAGGGATGAAGTTGATGTCCTTAACAAGGTTAGGAAGATTGTCGGGGGCATAAGATGGGATGCCAAAATTATGGATCATGAGGATGGGCCCCTCGTTCCCGAGAAGATATTGGTCGTCGTTAAACAGTACTGGGTTGCCGGCAGTGGAAACAGCACATCCAGTGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009505 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0030312 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

132

Amino Acids

14.83

Weight (kDa)

5.04

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	1 - 116	9.1e-53	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010596)

Species	Orthologous Gene IDs
malus_domestica	MD06G1039600.v1.1 MD13G1215200.v1.1
prunus_persica	Prupe.5G045100_v2.0.a1
pyrus_communis	pycom05g00430 pycom07g24350 pycom15g02370 pycom16g23870
rosa_chinensis	RchiOBHm_Chr4g0393521
rosa_laevigata	RLG00000006414 RLG00000007546 RLG00000009741 RLG00000012464
rosa_multiflora	Rmu_co8388373.1_g000001 Rmu_sc0004469.1_g000016 Rmu_sc0004884.1_g000002 Rmu_sc0006171.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086270 Rroxscaffold_3G00253570
rosa_samantha	Rh4BG043800 Rh5DG486700 Rh6CG274800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	2 cut(s)	198, 306
AcuI	CTGAAG	1 cut(s)	208
AfaI	GTAC	3 cut(s)	101, 149, 353
AfiI	CCNNNNNNNGG	1 cut(s)	250
AluBI	AGCT	1 cut(s)	144
AluI	AGCT	1 cut(s)	144
AlwI	GGATC	2 cut(s)	198, 306
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	311
ApaI	GGGCCC	1 cut(s)	315
ApeKI	GCWGC	1 cut(s)	202
AspS9I	GGNCC	2 cut(s)	311, 312
AsuNHI	GCTAGC	1 cut(s)	128
AvaI	CYCGRG	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	3 cut(s)	181, 273, 302
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
BmcAI	AGTACT	1 cut(s)	353
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	2 cut(s)	311, 312
BmiI	GGNNCC	2 cut(s)	313, 314
BmrI	ACTGGG	1 cut(s)	364
BmsI	GCATC	1 cut(s)	274
BmtI	GCTAGC	1 cut(s)	132
BmuI	ACTGGG	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	177
BsaAI	YACGTR	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	104
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	4 cut(s)	83, 171, 359, 384
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	5 cut(s)	174, 235, 289, 313, 380
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseNI	ACTGG	4 cut(s)	83, 171, 359, 384
BseSI	GKGCMC	1 cut(s)	315
BseXI	GCAGC	1 cut(s)	214
BshFI	GGCC	1 cut(s)	313
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	323
Bsp120I	GGGCCC	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp1407I	TGTACA	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	190, 298
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	1 cut(s)	313
BspHI	TCATGA	2 cut(s)	73, 301
BspLI	GGNNCC	2 cut(s)	313, 314
BspOI	GCTAGC	1 cut(s)	132
BspPI	GGATC	2 cut(s)	198, 306
BsrFI	RCCGGY	1 cut(s)	362
BsrGI	TGTACA	1 cut(s)	147
BsrI	ACTGG	4 cut(s)	83, 171, 359, 384
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	2 cut(s)	190, 298
BssT1I	CCWWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	217, 351
BstAUI	TGTACA	1 cut(s)	147
BstBAI	YACGTR	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	130, 364
BstDEI	CTNAG	1 cut(s)	24
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	5 cut(s)	174, 235, 289, 313, 380
BstKTI	GATC	2 cut(s)	193, 301
BstMBI	GATC	2 cut(s)	190, 298
BstSLI	GKGCMC	1 cut(s)	315
BstSNI	TACGTA	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	177
BstXI	CCANNNNNNTGG	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	313
BtsCI	GGATG	5 cut(s)	174, 235, 289, 313, 380
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	2 cut(s)	373, 391
Cac8I	GCNNGC	2 cut(s)	130, 364
CciI	TCATGA	2 cut(s)	73, 301
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	2 cut(s)	311, 312
Csp6I	GTAC	3 cut(s)	100, 148, 352
CviAII	CATG	3 cut(s)	74, 125, 302
CviJI	RGCY	4 cut(s)	90, 144, 205, 313
CviKI_1	RGCY	4 cut(s)	90, 144, 205, 313
CviQI	GTAC	3 cut(s)	100, 148, 352
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	2 cut(s)	192, 300
DpnII	GATC	2 cut(s)	190, 298
Eco105I	TACGTA	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	323
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	104
FaeI	CATG	3 cut(s)	77, 128, 305
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	3 cut(s)	73, 124, 301
FauNDI	CATATG	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	5 cut(s)	161, 242, 296, 320, 367
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	1 cut(s)	203
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	1 cut(s)	363
Hin1II	CATG	3 cut(s)	77, 128, 305
HpaII	CCGG	1 cut(s)	363
Hpy188III	TCNNGA	3 cut(s)	74, 302, 323
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	2 cut(s)	80, 203
HpyCH4III	ACNGT	2 cut(s)	217, 351
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	2 cut(s)	162, 202
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	1 cut(s)	98
Hsp92II	CATG	3 cut(s)	77, 128, 305
KroI	GCCGGC	1 cut(s)	362
KroNI	GCCGGC	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	190, 298
LpnPI	CCDG	6 cut(s)	64, 152, 211, 219, 340, 376
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	98
MalI	GATC	2 cut(s)	192, 300
MboI	GATC	2 cut(s)	190, 298
MboII	GAAGA	4 cut(s)	182, 214, 271, 340
MfeI	CAATTG	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	2 cut(s)	18, 291
MnlI	CCTC	3 cut(s)	47, 298, 326
MroNI	GCCGGC	1 cut(s)	362
MseI	TTAA	2 cut(s)	246, 345
MslI	CAYNNNNRTG	1 cut(s)	306
MspI	CCGG	1 cut(s)	363
MunI	CAATTG	1 cut(s)	18
NaeI	GCCGGC	1 cut(s)	364
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	2 cut(s)	190, 298
NgoMIV	GCCGGC	1 cut(s)	362
NheI	GCTAGC	1 cut(s)	128
NlaIII	CATG	3 cut(s)	77, 128, 305
NlaIV	GGNNCC	2 cut(s)	313, 314
PagI	TCATGA	2 cut(s)	73, 301
PdiI	GCCGGC	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	204
Ppu21I	YACGTR	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	313, 314
PspOMI	GGGCCC	1 cut(s)	311
PspPI	GGNCC	2 cut(s)	311, 312
RsaI	GTAC	3 cut(s)	101, 149, 353
RsaNI	GTAC	3 cut(s)	100, 148, 352
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	246, 345
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	2 cut(s)	190, 298
Sau96I	GGNCC	2 cut(s)	311, 312
ScaI	AGTACT	1 cut(s)	353
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	7 cut(s)	40, 58, 101, 110, 120, 146, 255
SfaNI	GCATC	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	306
SnaBI	TACGTA	1 cut(s)	99
Sse9I	AATT	2 cut(s)	18, 291
SsiI	CCGC	1 cut(s)	132
SspMI	CTAG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	2 cut(s)	217, 351
TaiI	ACGT	1 cut(s)	101
TasI	AATT	2 cut(s)	18, 291
TatI	WGTACW	2 cut(s)	147, 351
Tru1I	TTAA	2 cut(s)	246, 345
Tru9I	TTAA	2 cut(s)	246, 345
TscAI	CASTG	2 cut(s)	373, 391
TseI	GCWGC	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	17, 113, 246
TspRI	CASTG	2 cut(s)	373, 391
XagI	CCTNNNNNAGG	1 cut(s)	248
XspI	CTAG	1 cut(s)	129
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.