Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010596

Physical Location & Seq

Genomic Coordinates Forward (+)

1386868 .. 1388025

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02370.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAGTCAGTGACGTGGGTGTCAAAATATACCAGAAGCCAGACTCAAATGATATATATCGATCTGAGGAGGAAGAAATATCCACCTTTGTGCAAGGAAAATGAAAACCCAGATGCAGCCTGGTATGTTCCCGTGAAGACTTGCTTGCACCCCATTCCATCTGCCATTGAACAGCGTGGCACAGAGTGGCCAGAGGAATGGCCCAAAAGGCTCGAAAGGTATCCTGACTGGTTAAGTGATAAAGATAAATTGGATGCAGACACCAAGCACTGGAAAGCTATTGTTGATAAATCTTATCTCACTGGACTGGGTATTGACTGGTCAAAAATTCGAAATGTAATGGACATGAAAGCCATCTATGGAGGATTTGCTGCAGCCCTCGCACAACAAAAGGTTTGGGTGATGAATGTGGTACCTGTCCATGCTCCTGATACACTTCCTTTCATATTTGAACGCGGGCTTGTTGGAACCTACCACGACTGGTGCGAGTCTTTCGGTACTTATCCCAGATCATATGACCTTTTGCATGTGGATCATCTGTTTTCACGGCTTAAGAATAGGTGTAAGCAGCCTGTATCAATCGTTGTTGAGATGGATCGCTTGTTACGGCCTGGAGGTTGGGCGATTATACGCGAGAAAGTTGAGGTACTGGAACCCCTGGAGGGTATATTGAAGAGTATGCATTGGGAGATCCGGATGACTTATGCTCAGGGAAAGGAGGGTATCTTATGCGCCCAGAAAACGTTGTGGCGGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

253

Amino Acids

29.5

Weight (kDa)

8.95

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010596)

Species	Orthologous Gene IDs
malus_domestica	MD06G1039600.v1.1 MD13G1215200.v1.1
prunus_persica	Prupe.5G045100_v2.0.a1
pyrus_communis	pycom05g00430 pycom07g24350 pycom15g02370 pycom16g23870
rosa_chinensis	RchiOBHm_Chr4g0393521
rosa_laevigata	RLG00000006414 RLG00000007546 RLG00000009741 RLG00000012464
rosa_multiflora	Rmu_co8388373.1_g000001 Rmu_sc0004469.1_g000016 Rmu_sc0004884.1_g000002 Rmu_sc0006171.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086270 Rroxscaffold_3G00253570
rosa_samantha	Rh4BG043800 Rh5DG486700 Rh6CG274800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	19
Acc65I	GGTACC	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	412
AccB7I	CCANNNNNTGG	1 cut(s)	270
AccII	CGCG	2 cut(s)	456, 633
AccIII	TCCGGA	1 cut(s)	693
AciI	CCGC	2 cut(s)	456, 751
AclI	AACGTT	1 cut(s)	743
AclWI	GGATC	3 cut(s)	540, 603, 685
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	327
AdeI	CACNNNGTG	1 cut(s)	186
AfaI	GTAC	3 cut(s)	414, 499, 648
AfiI	CCNNNNNNNGG	2 cut(s)	270, 662
AflII	CTTAAG	1 cut(s)	551
AgsI	TTSAA	3 cut(s)	170, 452, 673
AjiI	CACGTC	1 cut(s)	15
AjnI	CCWGG	3 cut(s)	119, 610, 657
AleI	CACNNNNGTG	1 cut(s)	88
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
AlwI	GGATC	3 cut(s)	540, 603, 685
Aor13HI	TCCGGA	1 cut(s)	693
AoxI	GGCC	4 cut(s)	188, 200, 608, 752
ApeKI	GCWGC	4 cut(s)	116, 371, 374, 568
ApoI	RAATTY	1 cut(s)	327
Asp718I	GGTACC	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	734
AspS9I	GGNCC	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	412
AsuII	TTCGAA	1 cut(s)	331
BalI	TGGCCA	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	412
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	4 cut(s)	128, 358, 386, 580
BccI	CCATC	3 cut(s)	166, 362, 586
BceAI	ACGGC	2 cut(s)	563, 623
BciT130I	CCWGG	3 cut(s)	121, 612, 659
BciVI	GTATCC	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	372
BfrI	CTTAAG	1 cut(s)	551
BfuI	GTATCC	1 cut(s)	231
BglI	GCCNNNNNGGC	1 cut(s)	208
BisI	GCNGC	5 cut(s)	117, 372, 375, 569, 752
BlsI	GCNGC	5 cut(s)	118, 373, 376, 570, 753
Bme1390I	CCNGG	3 cut(s)	121, 612, 659
BmgBI	CACGTC	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	3 cut(s)	414, 469, 654
BmrFI	CCNGG	3 cut(s)	121, 612, 659
BmrI	ACTGGG	1 cut(s)	317
BmsI	GCATC	2 cut(s)	103, 244
BmuI	ACTGGG	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	143
BpmI	CTGGAG	2 cut(s)	633, 680
Bpu10I	CCTNAGC	1 cut(s)	708
Bpu14I	TTCGAA	1 cut(s)	331
Bsa29I	ATCGAT	1 cut(s)	60
BsaBI	GATNNNNATC	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	657
BsaWI	WCCGGW	1 cut(s)	693
Bsc4I	CCNNNNNNNGG	2 cut(s)	270, 662
Bse1I	ACTGG	7 cut(s)	233, 275, 307, 312, 323, 485, 654
Bse8I	GATNNNNATC	1 cut(s)	56
BseAI	TCCGGA	1 cut(s)	693
BseBI	CCWGG	3 cut(s)	121, 612, 659
BseCI	ATCGAT	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	657
BseGI	GGATG	2 cut(s)	259, 702
BseJI	GATNNNNATC	1 cut(s)	56
BseLI	CCNNNNNNNGG	2 cut(s)	270, 662
BseMII	CTCAG	2 cut(s)	56, 722
BseNI	ACTGG	7 cut(s)	233, 275, 307, 312, 323, 485, 654
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	4 cut(s)	128, 358, 386, 580
Bsh1236I	CGCG	2 cut(s)	456, 633
BshFI	GGCC	4 cut(s)	190, 202, 610, 754
BshNI	GGYRCC	1 cut(s)	412
BshVI	ATCGAT	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	694
BslI	CCNNNNNNNGG	2 cut(s)	270, 662
BsnI	GGCC	4 cut(s)	190, 202, 610, 754
Bsp119I	TTCGAA	1 cut(s)	331
Bsp13I	TCCGGA	1 cut(s)	693
Bsp143I	GATC	5 cut(s)	61, 509, 532, 595, 690
BspACI	CCGC	2 cut(s)	456, 751
BspANI	GGCC	4 cut(s)	190, 202, 610, 754
BspCNI	CTCAG	2 cut(s)	57, 721
BspDI	ATCGAT	1 cut(s)	60
BspEI	TCCGGA	1 cut(s)	693
BspFNI	CGCG	2 cut(s)	456, 633
BspLI	GGNNCC	3 cut(s)	414, 469, 654
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	3 cut(s)	540, 603, 685
BspT104I	TTCGAA	1 cut(s)	331
BspT107I	GGYRCC	1 cut(s)	412
BspTI	CTTAAG	1 cut(s)	551
BsrI	ACTGG	7 cut(s)	233, 275, 307, 312, 323, 485, 654
BssECI	CCNNGG	1 cut(s)	657
BssMI	GATC	5 cut(s)	61, 509, 532, 595, 690
Bst2UI	CCWGG	3 cut(s)	121, 612, 659
Bst6I	CTCTTC	1 cut(s)	668
BstAFI	CTTAAG	1 cut(s)	551
BstBI	TTCGAA	1 cut(s)	331
BstC8I	GCNNGC	2 cut(s)	146, 458
BstDEI	CTNAG	2 cut(s)	65, 708
BstF5I	GGATG	2 cut(s)	259, 702
BstFNI	CGCG	2 cut(s)	456, 633
BstHHI	GCGC	1 cut(s)	734
BstKTI	GATC	5 cut(s)	64, 512, 535, 598, 693
BstMBI	GATC	5 cut(s)	61, 509, 532, 595, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 380
BstNI	CCWGG	3 cut(s)	121, 612, 659
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	3 cut(s)	119, 610, 657
BstSFI	CTRYAG	1 cut(s)	372
BstUI	CGCG	2 cut(s)	456, 633
BstV1I	GCAGC	4 cut(s)	128, 358, 386, 580
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	690
BstXI	CCANNNNNNTGG	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	690
Bsu15I	ATCGAT	1 cut(s)	60
BsuI	GTATCC	1 cut(s)	231
BsuRI	GGCC	4 cut(s)	190, 202, 610, 754
BsuTUI	ATCGAT	1 cut(s)	60
BtrI	CACGTC	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	259, 702
BtsIMutI	CAGTG	3 cut(s)	15, 268, 300
Cac8I	GCNNGC	2 cut(s)	146, 458
CfoI	GCGC	1 cut(s)	734
Cfr13I	GGNCC	1 cut(s)	201
ClaI	ATCGAT	1 cut(s)	60
Csp6I	GTAC	3 cut(s)	413, 498, 647
CviAII	CATG	3 cut(s)	346, 422, 527
CviQI	GTAC	3 cut(s)	413, 498, 647
DdeI	CTNAG	2 cut(s)	65, 708
DpnI	GATC	5 cut(s)	63, 511, 534, 597, 692
DpnII	GATC	5 cut(s)	61, 509, 532, 595, 690
DraIII	CACNNNGTG	1 cut(s)	186
DrdI	GACNNNNNNGTC	1 cut(s)	19
DseDI	GACNNNNNNGTC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	668
EarI	CTCTTC	1 cut(s)	668
EcoRII	CCWGG	3 cut(s)	119, 610, 657
EcoT22I	ATGCAT	1 cut(s)	684
FaeI	CATG	3 cut(s)	349, 425, 530
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FatI	CATG	3 cut(s)	345, 421, 526
FauI	CCCGC	1 cut(s)	449
FauNDI	CATATG	1 cut(s)	514
Fnu4HI	GCNGC	5 cut(s)	117, 372, 375, 569, 752
FokI	GGATG	2 cut(s)	266, 709
Fsp4HI	GCNGC	5 cut(s)	117, 372, 375, 569, 752
GlaI	GCGC	1 cut(s)	733
GluI	GCNGC	5 cut(s)	117, 372, 375, 569, 752
GsuI	CTGGAG	2 cut(s)	633, 680
HaeIII	GGCC	4 cut(s)	190, 202, 610, 754
HapII	CCGG	1 cut(s)	694
HhaI	GCGC	1 cut(s)	734
Hin1II	CATG	3 cut(s)	349, 425, 530
Hin6I	GCGC	1 cut(s)	732
HinP1I	GCGC	1 cut(s)	732
HinfI	GANTC	2 cut(s)	43, 488
HpaII	CCGG	1 cut(s)	694
HphI	GGTGA	1 cut(s)	412
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	3 cut(s)	224, 428, 694
HpyCH4IV	ACGT	2 cut(s)	14, 743
HpyCH4V	TGCA	7 cut(s)	93, 116, 148, 257, 374, 526, 682
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 380
HpyF3I	CTNAG	2 cut(s)	65, 708
HpySE526I	ACGT	2 cut(s)	14, 743
Hsp92II	CATG	3 cut(s)	349, 425, 530
HspAI	GCGC	1 cut(s)	732
Kpn2I	TCCGGA	1 cut(s)	693
KpnI	GGTACC	1 cut(s)	416
Kzo9I	GATC	5 cut(s)	61, 509, 532, 595, 690
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	4 cut(s)	128, 358, 386, 580
LweI	GCATC	2 cut(s)	103, 244
MaeII	ACGT	2 cut(s)	14, 743
MaeIII	GTNAC	2 cut(s)	10, 603
MalI	GATC	5 cut(s)	63, 511, 534, 597, 692
MboI	GATC	5 cut(s)	61, 509, 532, 595, 690
MboII	GAAGA	3 cut(s)	85, 148, 685
MflI	RGATCY	1 cut(s)	690
MlsI	TGGCCA	1 cut(s)	190
MluCI	AATT	2 cut(s)	248, 327
MluNI	TGGCCA	1 cut(s)	190
MlyI	GAGTC	2 cut(s)	37, 497
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	9 cut(s)	60, 63, 187, 356, 389, 608, 637, 655, 712
Mox20I	TGGCCA	1 cut(s)	190
Mph1103I	ATGCAT	1 cut(s)	684
MroI	TCCGGA	1 cut(s)	693
MscI	TGGCCA	1 cut(s)	190
MseI	TTAA	3 cut(s)	233, 552, 757
MslI	CAYNNNNRTG	1 cut(s)	88
Msp20I	TGGCCA	1 cut(s)	190
MspCI	CTTAAG	1 cut(s)	551
MspI	CCGG	1 cut(s)	694
MspR9I	CCNGG	3 cut(s)	121, 612, 659
MvaI	CCWGG	3 cut(s)	121, 612, 659
MvnI	CGCG	2 cut(s)	456, 633
MwoI	GCNNNNNNNGC	2 cut(s)	208, 380
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	5 cut(s)	61, 509, 532, 595, 690
NlaIII	CATG	3 cut(s)	349, 425, 530
NlaIV	GGNNCC	3 cut(s)	414, 469, 654
NmuCI	GTSAC	1 cut(s)	10
NsiI	ATGCAT	1 cut(s)	684
NspI	RCATGY	1 cut(s)	530
NspV	TTCGAA	1 cut(s)	331
OliI	CACNNNNGTG	1 cut(s)	88
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PflMI	CCANNNNNTGG	1 cut(s)	270
PkrI	GCNGC	5 cut(s)	118, 373, 376, 570, 753
PleI	GAGTC	2 cut(s)	37, 496
PpsI	GAGTC	2 cut(s)	37, 496
Psp1406I	AACGTT	1 cut(s)	743
Psp6I	CCWGG	3 cut(s)	119, 610, 657
PspGI	CCWGG	3 cut(s)	119, 610, 657
PspN4I	GGNNCC	3 cut(s)	414, 469, 654
PspPI	GGNCC	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	690
RsaI	GTAC	3 cut(s)	414, 499, 648
RsaNI	GTAC	3 cut(s)	413, 498, 647
RseI	CAYNNNNRTG	1 cut(s)	88
SaqAI	TTAA	3 cut(s)	233, 552, 757
SatI	GCNGC	5 cut(s)	117, 372, 375, 569, 752
Sau3AI	GATC	5 cut(s)	61, 509, 532, 595, 690
Sau96I	GGNCC	1 cut(s)	201
SchI	GAGTC	2 cut(s)	37, 497
ScrFI	CCNGG	3 cut(s)	121, 612, 659
SfaNI	GCATC	2 cut(s)	103, 244
SfcI	CTRYAG	1 cut(s)	372
SfuI	TTCGAA	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	2 cut(s)	248, 327
SsiI	CCGC	2 cut(s)	456, 751
StyD4I	CCNGG	3 cut(s)	119, 610, 657
TaiI	ACGT	2 cut(s)	17, 746
TaqI	TCGA	3 cut(s)	60, 213, 331
TasI	AATT	2 cut(s)	248, 327
TauI	GCSGC	1 cut(s)	754
Tru1I	TTAA	3 cut(s)	233, 552, 757
Tru9I	TTAA	3 cut(s)	233, 552, 757
TscAI	CASTG	3 cut(s)	15, 275, 307
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	4 cut(s)	116, 371, 374, 568
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	5 cut(s)	17, 117, 362, 419, 433
TspRI	CASTG	3 cut(s)	15, 275, 307
Van91I	CCANNNNNTGG	1 cut(s)	270
Vha464I	CTTAAG	1 cut(s)	551
XapI	RAATTY	1 cut(s)	327
XceI	RCATGY	1 cut(s)	530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.