Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010596

Physical Location & Seq

Genomic Coordinates Forward (+)

6896358 .. 6897271

Gene Structure 914 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006414

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAAAGTGAGGGAGAAGAAGAAGATGACGGTTGAGGAGGTAATGGTGAGGCCTAGTAATATCAAAGAAGAGCTTCGCTGGAAGTCATCAACTCATGGCCAGTCTGGAAGGGAAATGCAAAGATGCGGCGGCGCCCAGACTTGCGGAGCCAAGACTTTGCTTAACACCCGATGCGAAATGGAAGACATTCTTTTAGAAATGGATAGGATTTTAAGGCCACAAGGTAGTATAATTTTCAGGGATGATGTGGATATGGTTGTGAAGACCAAGGCGCTCCTATATGCAATGCAATATGATGCCATAATTGTAGACCATGAAGAGGGTCCTCATCATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

113

Amino Acids

12.93

Weight (kDa)

6.9

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	52 - 110	6.5e-15	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010596)

Species	Orthologous Gene IDs
malus_domestica	MD06G1039600.v1.1 MD13G1215200.v1.1
prunus_persica	Prupe.5G045100_v2.0.a1
pyrus_communis	pycom05g00430 pycom07g24350 pycom15g02370 pycom16g23870
rosa_chinensis	RchiOBHm_Chr4g0393521
rosa_laevigata	RLG00000006414 RLG00000007546 RLG00000009741 RLG00000012464
rosa_multiflora	Rmu_co8388373.1_g000001 Rmu_sc0004469.1_g000016 Rmu_sc0004884.1_g000002 Rmu_sc0006171.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086270 Rroxscaffold_3G00253570
rosa_samantha	Rh4BG043800 Rh5DG486700 Rh6CG274800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	3 cut(s)	126, 129, 144
AcoI	YGGCCR	1 cut(s)	97
AcyI	GRCGYC	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	319
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
AoxI	GGCC	3 cut(s)	50, 97, 215
Asp700I	GAANNNNTTC	2 cut(s)	72, 186
AspLEI	GCGC	2 cut(s)	134, 274
AspS9I	GGNCC	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	323
BalI	TGGCCA	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	131
BbsI	GAAGAC	2 cut(s)	189, 269
BfaI	CTAG	1 cut(s)	54
BfoI	RGCGCY	2 cut(s)	135, 275
BisI	GCNGC	2 cut(s)	127, 130
BlsI	GCNGC	2 cut(s)	128, 131
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	3 cut(s)	133, 148, 324
BmsI	GCATC	3 cut(s)	113, 161, 286
BpiI	GAAGAC	2 cut(s)	189, 269
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
Bse1I	ACTGG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMI	GCAATG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	1 cut(s)	50
BshFI	GGCC	3 cut(s)	52, 99, 217
BshNI	GGYRCC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	319
BsnI	GGCC	3 cut(s)	52, 99, 217
BspACI	CCGC	3 cut(s)	126, 129, 144
BspANI	GGCC	3 cut(s)	52, 99, 217
BspLI	GGNNCC	3 cut(s)	133, 148, 324
BspQI	GCTCTTC	1 cut(s)	63
BspT107I	GGYRCC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	267
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	2 cut(s)	63, 312
BstACI	GRCGYC	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	247
BstH2I	RGCGCY	2 cut(s)	135, 275
BstHHI	GCGC	2 cut(s)	134, 274
BstV2I	GAAGAC	2 cut(s)	189, 269
BsuRI	GGCC	3 cut(s)	52, 99, 217
BtsCI	GGATG	1 cut(s)	247
CfoI	GCGC	2 cut(s)	134, 274
Cfr13I	GGNCC	1 cut(s)	323
CviAII	CATG	2 cut(s)	95, 314
CviJI	RGCY	5 cut(s)	52, 73, 99, 149, 217
CviKI_1	RGCY	5 cut(s)	52, 73, 99, 149, 217
DinI	GGCGCC	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	63, 312
EarI	CTCTTC	2 cut(s)	63, 312
Eco130I	CCWWGG	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	267
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	2 cut(s)	98, 317
FalI	AAGNNNNNCTT	4 cut(s)	57, 89, 174, 206
FatI	CATG	2 cut(s)	94, 313
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	2 cut(s)	127, 130
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	2 cut(s)	127, 130
FspBI	CTAG	1 cut(s)	54
GlaI	GCGC	2 cut(s)	133, 273
GluI	GCNGC	2 cut(s)	127, 130
HaeII	RGCGCY	2 cut(s)	135, 275
HaeIII	GGCC	3 cut(s)	52, 99, 217
HhaI	GCGC	2 cut(s)	134, 274
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	98, 317
Hin6I	GCGC	2 cut(s)	132, 272
HinP1I	GCGC	2 cut(s)	132, 272
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188III	TCNNGA	1 cut(s)	105
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	1 cut(s)	102
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	3 cut(s)	118, 284, 289
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	98, 317
HspAI	GCGC	2 cut(s)	132, 272
KasI	GGCGCC	1 cut(s)	131
LguI	GCTCTTC	1 cut(s)	63
LmnI	GCTCC	2 cut(s)	146, 279
LpnPI	CCDG	5 cut(s)	64, 90, 113, 149, 223
LweI	GCATC	3 cut(s)	113, 161, 286
MaeI	CTAG	1 cut(s)	54
MboII	GAAGA	7 cut(s)	28, 31, 34, 80, 194, 274, 329
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	2 cut(s)	231, 303
MluNI	TGGCCA	1 cut(s)	99
Mly113I	GGCGCC	1 cut(s)	132
MnlI	CCTC	6 cut(s)	3, 28, 31, 42, 313, 336
Mox20I	TGGCCA	1 cut(s)	99
MroXI	GAANNNNTTC	2 cut(s)	72, 186
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	2 cut(s)	162, 212
Msp20I	TGGCCA	1 cut(s)	99
NarI	GGCGCC	1 cut(s)	132
NlaIII	CATG	2 cut(s)	98, 317
NlaIV	GGNNCC	3 cut(s)	133, 148, 324
PceI	AGGCCT	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	63
PdmI	GAANNNNTTC	2 cut(s)	72, 186
PkrI	GCNGC	2 cut(s)	128, 131
PluTI	GGCGCC	1 cut(s)	135
PpuMI	RGGWCCY	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	323
PspN4I	GGNNCC	3 cut(s)	133, 148, 324
PspPI	GGNCC	1 cut(s)	323
PspPPI	RGGWCCY	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	162, 212
SatI	GCNGC	2 cut(s)	127, 130
Sau96I	GGNCC	1 cut(s)	323
SetI	ASST	3 cut(s)	42, 75, 226
SfaNI	GCATC	3 cut(s)	113, 161, 286
SfoI	GGCGCC	1 cut(s)	133
SinI	GGWCC	1 cut(s)	323
Sse9I	AATT	2 cut(s)	231, 303
SseBI	AGGCCT	1 cut(s)	52
SsiI	CCGC	3 cut(s)	126, 129, 144
SspDI	GGCGCC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	54
StuI	AGGCCT	1 cut(s)	52
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	31
TasI	AATT	2 cut(s)	231, 303
TauI	GCSGC	2 cut(s)	129, 132
Tru1I	TTAA	2 cut(s)	162, 212
Tru9I	TTAA	2 cut(s)	162, 212
TspDTI	ATGAA	2 cut(s)	17, 330
VpaK11BI	GGWCC	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	2 cut(s)	72, 186
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.