RLG00000009741

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0010596
Physical Location & Seq
Reverse (-)
57211257 .. 57211937
681 bp
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UTR
Exon/CDS
Intron
RLM00000009741

Sequence Viewer

Length: 402 bp
ATGAATGTCGTCCCTGAAGATGGACCAAACACACTAAAGCTGATATACGACAGAGGCCTTATAGGCAGTATTCACAGCTGGTGTGAAGCCTATTCAACATACCCCCGTACTTATGATTTACTCCATGCTTGGACTGTCTTCTCTGACTTGGAAAAGAAAGAATGCAGTGCTGAGGATCTGTTGCTTGAGATGGATCGCATACTCAGGCCAACTGGATTTATAATTATCCGCGACAAACAGTCAGTGGTTGATTTAGTTAAGAAATATCTACCAGCACTGCACTGGGAAGTAGTGGCACAAACCGACTCCAGTTCAGATTCCGACCAGGACGGAGATGACATTGTACTTATAATCCAAAAGAAAATATGGCTGACAAGTGACAGCCTCAGGGATTCAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Methyltransf_29 zf-C3HC4_3

Protein Analysis

134

Amino Acids

15.24

Weight (kDa)

4.63

Isoelectric Point (pI)

41.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_29 PF03141 1 - 120 2.9e-47 Putative S-adenosyl-L-methionine-dependent methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 221, 350
AccII CGCG 1 cut(s) 231
AciI CCGC 1 cut(s) 229
AclWI GGATC 2 cut(s) 183, 201
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 2 cut(s) 109, 345
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 1 cut(s) 96
AhdI GACNNNNNGTC 1 cut(s) 238
AjnI CCWGG 1 cut(s) 324
AluBI AGCT 2 cut(s) 40, 78
AluI AGCT 2 cut(s) 40, 78
AlwI GGATC 2 cut(s) 183, 201
AoxI GGCC 2 cut(s) 55, 206
AspS9I GGNCC 1 cut(s) 23
AvaII GGWCC 1 cut(s) 23
AxyI CCTNAGG 1 cut(s) 386
BbsI GAAGAC 1 cut(s) 130
BbvCI CCTCAGC 1 cut(s) 171
BccI CCATC 2 cut(s) 14, 184
BciT130I CCWGG 1 cut(s) 326
BglI GCCNNNNNGGC 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 326
Bme18I GGWCC 1 cut(s) 23
BmeRI GACNNNNNGTC 1 cut(s) 238
BmgT120I GGNCC 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 326
BmrI ACTGGG 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 130
BpmI CTGGAG 1 cut(s) 292
Bpu10I CCTNAGC 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 3 cut(s) 217, 287, 309
Bse21I CCTNAGG 1 cut(s) 386
BseBI CCWGG 1 cut(s) 326
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 3 cut(s) 162, 217, 400
BseNI ACTGG 3 cut(s) 217, 287, 309
BsgI GTGCAG 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 2 cut(s) 57, 208
BslI CCNNNNNNNGG 1 cut(s) 20
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 2 cut(s) 57, 208
Bsp143I GATC 2 cut(s) 175, 193
BspACI CCGC 1 cut(s) 229
BspANI GGCC 2 cut(s) 57, 208
BspCNI CTCAG 3 cut(s) 163, 216, 399
BspFNI CGCG 1 cut(s) 231
BspPI GGATC 2 cut(s) 183, 201
BsrI ACTGG 3 cut(s) 217, 287, 309
BssMI GATC 2 cut(s) 175, 193
Bst2UI CCWGG 1 cut(s) 326
Bst4CI ACNGT 2 cut(s) 136, 240
BstDEI CTNAG 3 cut(s) 171, 203, 386
BstFNI CGCG 1 cut(s) 231
BstKTI GATC 2 cut(s) 178, 196
BstMBI GATC 2 cut(s) 175, 193
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstNI CCWGG 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 324
BstUI CGCG 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 130
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
Bsu36I CCTNAGG 1 cut(s) 386
BsuRI GGCC 2 cut(s) 57, 208
BtsI GCAGTG 2 cut(s) 172, 275
BtsIMutI CAGTG 4 cut(s) 172, 249, 275, 280
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 108, 344
CviAII CATG 1 cut(s) 125
CviJI RGCY 7 cut(s) 40, 57, 78, 89, 208, 370, 384
CviKI_1 RGCY 7 cut(s) 40, 57, 78, 89, 208, 370, 384
CviQI GTAC 2 cut(s) 108, 344
DdeI CTNAG 3 cut(s) 171, 203, 386
DpnI GATC 2 cut(s) 177, 195
DpnII GATC 2 cut(s) 175, 193
DriI GACNNNNNGTC 1 cut(s) 238
Eam1105I GACNNNNNGTC 1 cut(s) 238
Eco147I AGGCCT 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 324
FaeI CATG 1 cut(s) 128
FaiI YATR 9 cut(s) 46, 62, 100, 114, 126, 200, 221, 350, 367
FatI CATG 1 cut(s) 124
GsuI CTGGAG 1 cut(s) 292
HaeIII GGCC 2 cut(s) 57, 208
Hin1II CATG 1 cut(s) 128
HinfI GANTC 3 cut(s) 305, 317, 392
Hpy188I TCNGA 4 cut(s) 145, 316, 322, 397
HpyCH4III ACNGT 2 cut(s) 136, 240
HpyCH4V TGCA 2 cut(s) 165, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 3 cut(s) 171, 203, 386
Hsp92II CATG 1 cut(s) 128
Kzo9I GATC 2 cut(s) 175, 193
MaeIII GTNAC 1 cut(s) 377
MalI GATC 2 cut(s) 177, 195
MboI GATC 2 cut(s) 175, 193
MboII GAAGA 2 cut(s) 29, 130
MflI RGATCY 1 cut(s) 175
MluCI AATT 1 cut(s) 222
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 3 cut(s) 47, 166, 395
MseI TTAA 1 cut(s) 258
MspA1I CMGCKG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 326
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 1 cut(s) 326
MvnI CGCG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 63
NdeII GATC 2 cut(s) 175, 193
NlaIII CATG 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 377
PceI AGGCCT 1 cut(s) 57
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 2 cut(s) 317, 392
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PsiI TTATAA 2 cut(s) 221, 350
Psp6I CCWGG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 324
PspPI GGNCC 1 cut(s) 23
PsuI RGATCY 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 78
RsaI GTAC 2 cut(s) 109, 345
RsaNI GTAC 2 cut(s) 108, 344
SaqAI TTAA 1 cut(s) 258
Sau3AI GATC 2 cut(s) 175, 193
Sau96I GGNCC 1 cut(s) 23
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 1 cut(s) 326
SetI ASST 2 cut(s) 42, 80
SinI GGWCC 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 1 cut(s) 222
SseBI AGGCCT 1 cut(s) 57
SsiI CCGC 1 cut(s) 229
StuI AGGCCT 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 324
TaaI ACNGT 2 cut(s) 136, 240
TasI AATT 1 cut(s) 222
TatI WGTACW 1 cut(s) 343
TfiI GAWTC 2 cut(s) 317, 392
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 4 cut(s) 172, 249, 282, 287
TseFI GTSAC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 4 cut(s) 172, 249, 282, 287
VpaK11BI GGWCC 1 cut(s) 23
XcmI CCANNNNNNNNNTGG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.