Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004884.1

Orthogroup ID

OG0010596

Physical Location & Seq

Genomic Coordinates Reverse (-)

1938 .. 2395

Gene Structure 458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004884.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgaatgtggtccctgtccatgcacctgatacgcttcctttcatttttgagcgtgggcttgttggaacctaccatgactggtgtgagtctttcggtacttatccaagatcatatgatcttttgcatgctgatcatctgttttcacggctcaagaacaggtgtaagcagcctgcatcaatcgttgttgagatggatcgtattttacggccaggaggttgggccatcatacgtgacaaagttgagattctagatccgttggagggaatactcaagagtttgcattgggatataagaatgacttatgctcaacaaaaagagggtattctctgtgcacagaaaactacatggcgcccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0012505 GO:0016740 GO:0016741 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

118

Amino Acids

13.72

Weight (kDa)

7.77

Isoelectric Point (pI)

38.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010596)

Species	Orthologous Gene IDs
malus_domestica	MD06G1039600.v1.1 MD13G1215200.v1.1
prunus_persica	Prupe.5G045100_v2.0.a1
pyrus_communis	pycom05g00430 pycom07g24350 pycom15g02370 pycom16g23870
rosa_chinensis	RchiOBHm_Chr4g0393521
rosa_laevigata	RLG00000006414 RLG00000007546 RLG00000009741 RLG00000012464
rosa_multiflora	Rmu_co8388373.1_g000001 Rmu_sc0004469.1_g000016 Rmu_sc0004884.1_g000002 Rmu_sc0006171.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086270 Rroxscaffold_3G00253570
rosa_samantha	Rh4BG043800 Rh5DG486700 Rh6CG274800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	348
AclWI	GGATC	2 cut(s)	201, 245
AcoI	YGGCCR	1 cut(s)	206
AcyI	GRCGYC	1 cut(s)	349
AfaI	GTAC	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	208
Alw21I	GWGCWC	1 cut(s)	334
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	2 cut(s)	201, 245
AoxI	GGCC	2 cut(s)	206, 219
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	2 cut(s)	10, 219
AvaII	GGWCC	1 cut(s)	10
BaeGI	GKGCMC	1 cut(s)	334
BanI	GGYRCC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	2 cut(s)	184, 230
BceAI	ACGGC	2 cut(s)	161, 221
BciT130I	CCWGG	1 cut(s)	210
BclI	TGATCA	1 cut(s)	130
BfaI	CTAG	1 cut(s)	248
BfoI	RGCGCY	1 cut(s)	352
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	10, 219
BmiI	GGNNCC	3 cut(s)	12, 67, 350
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	182
BpuEI	CTTGAG	2 cut(s)	134, 254
BsaAI	YACGTR	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	349
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	2 cut(s)	208, 221
BshNI	GGYRCC	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	260
BsnI	GGCC	2 cut(s)	208, 221
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	5 cut(s)	107, 115, 130, 193, 250
BspANI	GGCC	2 cut(s)	208, 221
BspLI	GGNNCC	3 cut(s)	12, 67, 350
BspPI	GGATC	2 cut(s)	201, 245
BspT107I	GGYRCC	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	83
BssMI	GATC	5 cut(s)	107, 115, 130, 193, 250
BssNI	GRCGYC	1 cut(s)	349
Bst2UI	CCWGG	1 cut(s)	210
BstACI	GRCGYC	1 cut(s)	349
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	2 cut(s)	126, 171
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	5 cut(s)	110, 118, 133, 196, 253
BstMBI	GATC	5 cut(s)	107, 115, 130, 193, 250
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	208
BstSLI	GKGCMC	1 cut(s)	334
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	250
BstXI	CCANNNNNNTGG	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	208, 221
Cac8I	GCNNGC	2 cut(s)	126, 171
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	2 cut(s)	10, 219
Csp6I	GTAC	1 cut(s)	96
CviAII	CATG	4 cut(s)	20, 74, 125, 345
CviJI	RGCY	5 cut(s)	58, 148, 169, 208, 221
CviKI_1	RGCY	5 cut(s)	58, 148, 169, 208, 221
CviQI	GTAC	1 cut(s)	96
DinI	GGCGCC	1 cut(s)	350
DpnI	GATC	5 cut(s)	109, 117, 132, 195, 252
DpnII	GATC	5 cut(s)	107, 115, 130, 193, 250
EaeI	YGGCCR	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	10
EcoRII	CCWGG	1 cut(s)	208
EgeI	GGCGCC	1 cut(s)	350
EheI	GGCGCC	1 cut(s)	350
FaeI	CATG	4 cut(s)	23, 77, 128, 348
FaiI	YATR	9 cut(s)	21, 75, 112, 114, 126, 227, 290, 303, 346
FalI	AAGNNNNNCTT	2 cut(s)	283, 315
FatI	CATG	4 cut(s)	19, 73, 124, 344
FauNDI	CATATG	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	167
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	1 cut(s)	167
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	208, 221
HhaI	GCGC	1 cut(s)	351
Hin1I	GRCGYC	1 cut(s)	349
Hin1II	CATG	4 cut(s)	23, 77, 128, 348
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HinfI	GANTC	2 cut(s)	86, 244
Hpy166II	GTNNAC	1 cut(s)	332
Hpy188III	TCNNGA	3 cut(s)	151, 248, 271
Hpy8I	GTNNAC	1 cut(s)	332
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	5 cut(s)	23, 124, 173, 280, 332
HpySE526I	ACGT	1 cut(s)	229
Hsp92I	GRCGYC	1 cut(s)	349
Hsp92II	CATG	4 cut(s)	23, 77, 128, 348
HspAI	GCGC	1 cut(s)	349
KasI	GGCGCC	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	5 cut(s)	107, 115, 130, 193, 250
LpnPI	CCDG	7 cut(s)	27, 39, 64, 142, 183, 195, 222
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	5 cut(s)	109, 117, 132, 195, 252
MboI	GATC	5 cut(s)	107, 115, 130, 193, 250
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	334
Mly113I	GGCGCC	1 cut(s)	349
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	2 cut(s)	43, 237
MnlI	CCTC	3 cut(s)	206, 253, 310
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
NarI	GGCGCC	1 cut(s)	349
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	5 cut(s)	107, 115, 130, 193, 250
NlaIII	CATG	4 cut(s)	23, 77, 128, 348
NlaIV	GGNNCC	3 cut(s)	12, 67, 350
NmuCI	GTSAC	1 cut(s)	230
NspI	RCATGY	1 cut(s)	128
PaeI	GCATGC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	1 cut(s)	168
PleI	GAGTC	1 cut(s)	94
PluTI	GGCGCC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	3 cut(s)	12, 67, 350
PspPI	GGNCC	2 cut(s)	10, 219
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	1 cut(s)	97
RsaNI	GTAC	1 cut(s)	96
SatI	GCNGC	1 cut(s)	167
Sau3AI	GATC	5 cut(s)	107, 115, 130, 193, 250
Sau96I	GGNCC	2 cut(s)	10, 219
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	5 cut(s)	28, 71, 161, 217, 232
SfaNI	GCATC	1 cut(s)	182
SfoI	GGCGCC	1 cut(s)	350
SinI	GGWCC	1 cut(s)	10
SmlI	CTYRAG	2 cut(s)	149, 269
SmoI	CTYRAG	2 cut(s)	149, 269
SphI	GCATGC	1 cut(s)	128
SspDI	GGCGCC	1 cut(s)	348
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	1 cut(s)	208
TaiI	ACGT	1 cut(s)	232
TfiI	GAWTC	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	17, 31
TspGWI	ACGGA	1 cut(s)	243
VneI	GTGCAC	1 cut(s)	330
VpaK11BI	GGWCC	1 cut(s)	10
XbaI	TCTAGA	1 cut(s)	247
XceI	RCATGY	1 cut(s)	128
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.