Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010596

Physical Location & Seq

Genomic Coordinates Forward (+)

20401134 .. 20401713

Gene Structure 580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1215200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAATGTTGTCTCTGAAGATGGACCAAATACACTTAAGTTGATATATGCTAGTATGCAAATCAAGTTACTGAAATATGTTGAGCATGTGTGTGAAGCCTATTCAACGTACCCTCAGACTTATGATTTACTCCATGGTTGGACTGTATTCTCAGACATAGAAATGAAAGAATGCAGTGCTGAGGATCTACTGCTTGGGATGGATCGCATACGCAGGCCCATTGGCTTTGTAATAATCTACGACAAACAATCAGTAGTAGATTTTGTAAAAAAGTATCTAACGGCATTGCACTGGGAAGTAGTGGCAGTATCCAACGCCAGTTTAGTTCAGACTAAGATGGAGACGACGTTGTGTTTATTATCCAAAAGAAAATATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005911 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009506 GO:0012505 GO:0016020 GO:0016740 GO:0016741 GO:0030054 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0097708 GO:0098588 GO:0098791 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

127

Amino Acids

14.49

Weight (kDa)

6.28

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_29	PF03141	1 - 111	3.4e-30	Putative S-adenosyl-L-methionine-dependent methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010596)

Species	Orthologous Gene IDs
malus_domestica	MD06G1039600.v1.1 MD13G1215200.v1.1
prunus_persica	Prupe.5G045100_v2.0.a1
pyrus_communis	pycom05g00430 pycom07g24350 pycom15g02370 pycom16g23870
rosa_chinensis	RchiOBHm_Chr4g0393521
rosa_laevigata	RLG00000006414 RLG00000007546 RLG00000009741 RLG00000012464
rosa_multiflora	Rmu_co8388373.1_g000001 Rmu_sc0004469.1_g000016 Rmu_sc0004884.1_g000002 Rmu_sc0006171.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086270 Rroxscaffold_3G00253570
rosa_samantha	Rh4BG043800 Rh5DG486700 Rh6CG274800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	192, 210
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	1 cut(s)	110
AflII	CTTAAG	1 cut(s)	35
AgsI	TTSAA	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	16, 335
AlwI	GGATC	2 cut(s)	192, 210
AoxI	GGCC	1 cut(s)	215
AspS9I	GGNCC	2 cut(s)	23, 216
AvaII	GGWCC	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	180
BccI	CCATC	3 cut(s)	14, 193, 331
BceAI	ACGGC	1 cut(s)	297
BciVI	GTATCC	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	16, 335
BfaI	CTAG	1 cut(s)	51
BfrI	CTTAAG	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	23, 216
BmrI	ACTGGG	1 cut(s)	301
BmuI	ACTGGG	1 cut(s)	301
Bpu10I	CCTNAGC	1 cut(s)	180
BsaJI	CCNNGG	1 cut(s)	133
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bse1I	ACTGG	2 cut(s)	296, 318
Bse3DI	GCAATG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	3 cut(s)	128, 165, 171
BseNI	ACTGG	2 cut(s)	296, 318
BshFI	GGCC	1 cut(s)	217
BsmAI	GTCTC	2 cut(s)	16, 335
BsmBI	CGTCTC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	217
Bsp143I	GATC	2 cut(s)	184, 202
Bsp19I	CCATGG	1 cut(s)	133
BspANI	GGCC	1 cut(s)	217
BspCNI	CTCAG	3 cut(s)	127, 164, 172
BspPI	GGATC	2 cut(s)	192, 210
BspTI	CTTAAG	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	296, 318
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	2 cut(s)	184, 202
BssT1I	CCWWGG	1 cut(s)	133
Bst4CI	ACNGT	1 cut(s)	145
BstAFI	CTTAAG	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	4 cut(s)	114, 151, 180, 333
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	1 cut(s)	204
BstKTI	GATC	2 cut(s)	187, 205
BstMAI	GTCTC	2 cut(s)	16, 335
BstMBI	GATC	2 cut(s)	184, 202
BstNSI	RCATGY	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BsuI	GTATCC	1 cut(s)	319
BsuRI	GGCC	1 cut(s)	217
BtgI	CCRYGG	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	204
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	181, 289
Cac8I	GCNNGC	1 cut(s)	215
Cfr13I	GGNCC	2 cut(s)	23, 216
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	2 cut(s)	86, 134
CviJI	RGCY	3 cut(s)	98, 217, 225
CviKI_1	RGCY	3 cut(s)	98, 217, 225
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	4 cut(s)	114, 151, 180, 333
DpnI	GATC	2 cut(s)	186, 204
DpnII	GATC	2 cut(s)	184, 202
Eco130I	CCWWGG	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	2 cut(s)	89, 137
FatI	CATG	2 cut(s)	85, 133
FokI	GGATG	1 cut(s)	211
FspBI	CTAG	1 cut(s)	51
HaeIII	GGCC	1 cut(s)	217
Hin1II	CATG	2 cut(s)	89, 137
Hpy188I	TCNGA	4 cut(s)	16, 117, 154, 330
Hpy99I	CGWCG	1 cut(s)	349
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	107, 347
HpyCH4V	TGCA	3 cut(s)	58, 174, 289
HpyF3I	CTNAG	4 cut(s)	114, 151, 180, 333
HpySE526I	ACGT	2 cut(s)	107, 347
Hsp92II	CATG	2 cut(s)	89, 137
Kzo9I	GATC	2 cut(s)	184, 202
LpnPI	CCDG	3 cut(s)	199, 277, 331
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	2 cut(s)	107, 347
MaeIII	GTNAC	1 cut(s)	66
MalI	GATC	2 cut(s)	186, 204
MboI	GATC	2 cut(s)	184, 202
MboII	GAAGA	1 cut(s)	29
MflI	RGATCY	1 cut(s)	184
MmeI	TCCRAC	2 cut(s)	119, 336
MnlI	CCTC	2 cut(s)	123, 175
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	2 cut(s)	90, 161
MspCI	CTTAAG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	133
NdeII	GATC	2 cut(s)	184, 202
NlaIII	CATG	2 cut(s)	89, 137
NspI	RCATGY	1 cut(s)	89
PctI	GAATGC	1 cut(s)	176
PspPI	GGNCC	2 cut(s)	23, 216
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	2 cut(s)	90, 161
SaqAI	TTAA	1 cut(s)	36
Sau3AI	GATC	2 cut(s)	184, 202
Sau96I	GGNCC	2 cut(s)	23, 216
SetI	ASST	2 cut(s)	110, 350
SgeI	CNNG	8 cut(s)	63, 76, 98, 146, 206, 226, 304, 330
SinI	GGWCC	1 cut(s)	23
SmiMI	CAYNNNNRTG	2 cut(s)	90, 161
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
SspMI	CTAG	1 cut(s)	51
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	2 cut(s)	110, 350
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	2 cut(s)	181, 296
TspDTI	ATGAA	2 cut(s)	17, 179
TspRI	CASTG	2 cut(s)	181, 296
Vha464I	CTTAAG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	23
XceI	RCATGY	1 cut(s)	89
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.