Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010596

Physical Location & Seq

Genomic Coordinates Reverse (-)

18003450 .. 18005066

Gene Structure 1617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007546

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCAAGTAGAAAAAGAAGAAGAGAGACTTGACAGGCTATCGAGATCAGAGGAGTCTCCAATTAGGGAAGTGAAGATGAAAGTGAGGGAGAAGAAGAAGATGACGGCTGAGGCGGTAATGGCGAGGGCCAGTAATCTGAAAGACAAGCTTCGCCGAAAGTTATCAACTCATGGCCAGTCTAGAAGGGAAAGGCAAAGGCGCGGCTCCAAGACTTTGCTTCATACCCTGCCTCACCGCGCCTATGGAAGATGCGAAGTAAGCGAGGCTGAAGGTCATAGGCCAGATGGAGCCGCGCCGATGCCATGCCAATTCATCAGATCTTTGACCTTAGAGATCACGAACTCCACCGCCTTGGAGAGGCCGGCCGGGATGACGTGGATTGAAATGGTAGAAAGAAGATCCACATATGTGGACCAGTTTGCTTGGATACAGAAGGGCAAGTATGGCCCTCTGGAGAAAACGGCCGCCGGAACATGCAACGGCGGTGTTATTGCTCATAGTAGTTTCCTGGACTTGGAGTTGGGCTTGGGGTTCTGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.54

Weight (kDa)

9.71

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010596)

Species	Orthologous Gene IDs
malus_domestica	MD06G1039600.v1.1 MD13G1215200.v1.1
prunus_persica	Prupe.5G045100_v2.0.a1
pyrus_communis	pycom05g00430 pycom07g24350 pycom15g02370 pycom16g23870
rosa_chinensis	RchiOBHm_Chr4g0393521
rosa_laevigata	RLG00000006414 RLG00000007546 RLG00000009741 RLG00000012464
rosa_multiflora	Rmu_co8388373.1_g000001 Rmu_sc0004469.1_g000016 Rmu_sc0004884.1_g000002 Rmu_sc0006171.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086270 Rroxscaffold_3G00253570
rosa_samantha	Rh4BG043800 Rh5DG486700 Rh6CG274800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	201, 237, 293
AciI	CCGC	7 cut(s)	113, 201, 235, 291, 348, 465, 483
AclWI	GGATC	1 cut(s)	393
AcoI	YGGCCR	3 cut(s)	172, 363, 462
AcuI	CTGAAG	1 cut(s)	288
AfiI	CCNNNNNNNGG	2 cut(s)	357, 514
AgsI	TTSAA	1 cut(s)	383
AjiI	CACGTC	1 cut(s)	375
AjnI	CCWGG	1 cut(s)	507
AleI	CACNNNNGTG	1 cut(s)	407
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	19, 60
AlwI	GGATC	1 cut(s)	393
AoxI	GGCC	7 cut(s)	126, 172, 278, 359, 363, 445, 462
AspLEI	GCGC	3 cut(s)	201, 239, 295
AspS9I	GGNCC	3 cut(s)	126, 412, 446
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	412
BalI	TGGCCA	1 cut(s)	174
BbvCI	CCTCAGC	1 cut(s)	108
BccI	CCATC	1 cut(s)	278
BceAI	ACGGC	3 cut(s)	120, 477, 496
BciT130I	CCWGG	1 cut(s)	509
BciVI	GTATCC	1 cut(s)	420
BcnI	CCSGG	1 cut(s)	367
BcoDI	GTCTC	2 cut(s)	19, 60
BfaI	CTAG	1 cut(s)	180
BfuI	GTATCC	1 cut(s)	420
BglII	AGATCT	1 cut(s)	317
BisI	GCNGC	3 cut(s)	202, 291, 465
BlsI	GCNGC	3 cut(s)	203, 292, 466
Bme1390I	CCNGG	2 cut(s)	367, 509
Bme18I	GGWCC	1 cut(s)	412
BmgBI	CACGTC	1 cut(s)	375
BmgT120I	GGNCC	3 cut(s)	126, 412, 446
BmiI	GGNNCC	2 cut(s)	205, 289
BmrFI	CCNGG	2 cut(s)	367, 509
BmsI	GCATC	2 cut(s)	239, 288
BpmI	CTGGAG	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	108
BpuMI	CCSGG	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	2 cut(s)	357, 514
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	3 cut(s)	129, 175, 415
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	2 cut(s)	357, 514
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	3 cut(s)	129, 175, 415
BseRI	GAGGAG	1 cut(s)	65
BseX3I	CGGCCG	2 cut(s)	363, 462
Bsh1236I	CGCG	3 cut(s)	201, 237, 293
Bsh1285I	CGRYCG	2 cut(s)	366, 465
BshFI	GGCC	7 cut(s)	128, 174, 280, 361, 365, 447, 464
BsiEI	CGRYCG	2 cut(s)	366, 465
BsiSI	CCGG	3 cut(s)	362, 366, 468
BslI	CCNNNNNNNGG	2 cut(s)	357, 514
BsmAI	GTCTC	2 cut(s)	19, 60
BsnI	GGCC	7 cut(s)	128, 174, 280, 361, 365, 447, 464
Bsp143I	GATC	4 cut(s)	44, 317, 333, 398
BspACI	CCGC	7 cut(s)	113, 201, 235, 291, 348, 465, 483
BspANI	GGCC	7 cut(s)	128, 174, 280, 361, 365, 447, 464
BspCNI	CTCAG	1 cut(s)	100
BspFNI	CGCG	3 cut(s)	201, 237, 293
BspLI	GGNNCC	2 cut(s)	205, 289
BspPI	GGATC	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	361
BsrI	ACTGG	3 cut(s)	129, 175, 415
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	4 cut(s)	44, 317, 333, 398
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	509
Bst6I	CTCTTC	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	108, 328
BstENI	CCTNNNNNAGG	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	375
BstFNI	CGCG	3 cut(s)	201, 237, 293
BstHHI	GCGC	3 cut(s)	201, 239, 295
BstKTI	GATC	4 cut(s)	47, 320, 336, 401
BstMAI	GTCTC	2 cut(s)	19, 60
BstMBI	GATC	4 cut(s)	44, 317, 333, 398
BstMCI	CGRYCG	2 cut(s)	366, 465
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 258, 444
BstNI	CCWGG	1 cut(s)	509
BstNSI	RCATGY	1 cut(s)	477
BstSCI	CCNGG	2 cut(s)	365, 507
BstUI	CGCG	3 cut(s)	201, 237, 293
BstX2I	RGATCY	2 cut(s)	317, 398
BstXI	CCANNNNNNTGG	2 cut(s)	352, 409
BstYI	RGATCY	2 cut(s)	317, 398
BstZI	CGGCCG	2 cut(s)	363, 462
BsuI	GTATCC	1 cut(s)	420
BsuRI	GGCC	7 cut(s)	128, 174, 280, 361, 365, 447, 464
BtrI	CACGTC	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	363
CfoI	GCGC	3 cut(s)	201, 239, 295
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	3 cut(s)	126, 412, 446
CviAII	CATG	3 cut(s)	170, 303, 474
DdeI	CTNAG	2 cut(s)	108, 328
DpnI	GATC	4 cut(s)	46, 319, 335, 400
DpnII	GATC	4 cut(s)	44, 317, 333, 398
EaeI	YGGCCR	3 cut(s)	172, 363, 462
EagI	CGGCCG	2 cut(s)	363, 462
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
EclXI	CGGCCG	2 cut(s)	363, 462
Eco130I	CCWWGG	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	412
Eco52I	CGGCCG	2 cut(s)	363, 462
Eco57I	CTGAAG	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	3 cut(s)	173, 306, 477
FalI	AAGNNNNNCTT	4 cut(s)	12, 44, 132, 164
FatI	CATG	3 cut(s)	169, 302, 473
FauNDI	CATATG	1 cut(s)	406
Fnu4HI	GCNGC	3 cut(s)	202, 291, 465
FokI	GGATG	1 cut(s)	382
FseI	GGCCGGCC	1 cut(s)	365
Fsp4HI	GCNGC	3 cut(s)	202, 291, 465
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	3 cut(s)	200, 238, 294
GluI	GCNGC	3 cut(s)	202, 291, 465
GsuI	CTGGAG	1 cut(s)	473
HaeIII	GGCC	7 cut(s)	128, 174, 280, 361, 365, 447, 464
HapII	CCGG	3 cut(s)	362, 366, 468
HhaI	GCGC	3 cut(s)	201, 239, 295
Hin1II	CATG	3 cut(s)	173, 306, 477
Hin6I	GCGC	3 cut(s)	199, 237, 293
HinP1I	GCGC	3 cut(s)	199, 237, 293
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	3 cut(s)	362, 366, 468
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	3 cut(s)	49, 138, 317
Hpy188III	TCNNGA	4 cut(s)	42, 180, 337, 452
Hpy8I	GTNNAC	1 cut(s)	412
HpyAV	CCTTC	3 cut(s)	177, 263, 427
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	2 cut(s)	4, 477
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 258, 444
HpyF3I	CTNAG	2 cut(s)	108, 328
HpySE526I	ACGT	1 cut(s)	374
Hsp92II	CATG	3 cut(s)	173, 306, 477
HspAI	GCGC	3 cut(s)	199, 237, 293
KroI	GCCGGC	1 cut(s)	361
KroNI	GCCGGC	1 cut(s)	363
Kzo9I	GATC	4 cut(s)	44, 317, 333, 398
LmnI	GCTCC	2 cut(s)	209, 287
LweI	GCATC	2 cut(s)	239, 288
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	374
MalI	GATC	4 cut(s)	46, 319, 335, 400
MboI	GATC	4 cut(s)	44, 317, 333, 398
MboII	GAAGA	8 cut(s)	29, 32, 85, 103, 106, 109, 258, 408
MflI	RGATCY	2 cut(s)	317, 398
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	2 cut(s)	60, 308
MluNI	TGGCCA	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	8 cut(s)	43, 78, 103, 117, 240, 256, 351, 459
Mox20I	TGGCCA	1 cut(s)	174
MroNI	GCCGGC	1 cut(s)	361
MscI	TGGCCA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	407
Msp20I	TGGCCA	1 cut(s)	174
MspI	CCGG	3 cut(s)	362, 366, 468
MspR9I	CCNGG	2 cut(s)	367, 509
MvaI	CCWGG	1 cut(s)	509
MvnI	CGCG	3 cut(s)	201, 237, 293
MwoI	GCNNNNNNNGC	3 cut(s)	119, 258, 444
NaeI	GCCGGC	1 cut(s)	363
NciI	CCSGG	1 cut(s)	367
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	4 cut(s)	44, 317, 333, 398
NgoMIV	GCCGGC	1 cut(s)	361
NlaIII	CATG	3 cut(s)	173, 306, 477
NlaIV	GGNNCC	2 cut(s)	205, 289
NspI	RCATGY	1 cut(s)	477
OliI	CACNNNNGTG	1 cut(s)	407
PdiI	GCCGGC	1 cut(s)	363
PfoI	TCCNGGA	1 cut(s)	507
PkrI	GCNGC	3 cut(s)	203, 292, 466
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	2 cut(s)	205, 289
PspPI	GGNCC	3 cut(s)	126, 412, 446
PsuI	RGATCY	2 cut(s)	317, 398
RigI	GGCCGGCC	1 cut(s)	365
RseI	CAYNNNNRTG	1 cut(s)	407
SatI	GCNGC	3 cut(s)	202, 291, 465
Sau3AI	GATC	4 cut(s)	44, 317, 333, 398
Sau96I	GGNCC	3 cut(s)	126, 412, 446
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	2 cut(s)	367, 509
SetI	ASST	4 cut(s)	150, 274, 329, 377
SfaNI	GCATC	2 cut(s)	239, 288
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	2 cut(s)	60, 308
SsiI	CCGC	7 cut(s)	113, 201, 235, 291, 348, 465, 483
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	365, 507
StyI	CCWWGG	1 cut(s)	351
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	1 cut(s)	41
TasI	AATT	2 cut(s)	60, 308
TauI	GCSGC	3 cut(s)	204, 293, 467
TspDTI	ATGAA	3 cut(s)	92, 209, 301
VpaK11BI	GGWCC	1 cut(s)	412
XagI	CCTNNNNNAGG	1 cut(s)	355
XbaI	TCTAGA	1 cut(s)	179
XceI	RCATGY	1 cut(s)	477
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.