Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010596

Physical Location & Seq

Genomic Coordinates Forward (+)

8501867 .. 8507827

Gene Structure 5961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00086270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCAACTCGAAAAAGAAGAAGAAAGACTTACCAAGCTATCGAGATTAGATGAGTCTCCGGTTGGGGAAGCGAAGATGAAAGTGAGGGAGAAGATGACGGTTGAGGCGGTAATGGTGAGGGCTAGTAATCTAAAAGACGAGCTTCACCGGAAGTCATTAACTCATGGCCGGTCCGGAGGAGAAAGCCGACCACTTGCCGCCCCATCACCTCTACACCACCGCATCCAAAACAACCTCCCATATCGGATCGGATCGAACGATCCGATTGTCGAGAAGAGGAGATTACGAGCAAGGCCGCAATCGGAACCACCAAGCGCAATCGCCGAACCCGGCGCCTCACTTATAAGTCTCCATCCTATGGCAGCGATCTCTACCCTAGCCGAGAGAGAAATCGAACGAATGCTAAGGAAGATGCGCGATGGTCCGGAGACGAGAGAGAGCAAGAAGACCTTTTCACGTTTCTGCACTTGTCTAGTCGTGCCTCTAGTGTGGGCTGTTGACTATGAAAGAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

19.42

Weight (kDa)

9.69

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010596)

Species	Orthologous Gene IDs
malus_domestica	MD06G1039600.v1.1 MD13G1215200.v1.1
prunus_persica	Prupe.5G045100_v2.0.a1
pyrus_communis	pycom05g00430 pycom07g24350 pycom15g02370 pycom16g23870
rosa_chinensis	RchiOBHm_Chr4g0393521
rosa_laevigata	RLG00000006414 RLG00000007546 RLG00000009741 RLG00000012464
rosa_multiflora	Rmu_co8388373.1_g000001 Rmu_sc0004469.1_g000016 Rmu_sc0004884.1_g000002 Rmu_sc0006171.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086270 Rroxscaffold_3G00253570
rosa_samantha	Rh4BG043800 Rh5DG486700 Rh6CG274800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	332
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccII	CGCG	1 cut(s)	417
AccIII	TCCGGA	2 cut(s)	173, 424
AciI	CCGC	4 cut(s)	107, 198, 220, 296
AclWI	GGATC	3 cut(s)	254, 254, 259
AcoI	YGGCCR	1 cut(s)	166
AcyI	GRCGYC	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	358
AluBI	AGCT	3 cut(s)	37, 142, 512
AluI	AGCT	3 cut(s)	37, 142, 512
Alw26I	GTCTC	3 cut(s)	60, 353, 422
AlwI	GGATC	3 cut(s)	254, 254, 259
Aor13HI	TCCGGA	2 cut(s)	173, 424
AoxI	GGCC	2 cut(s)	166, 293
ApeKI	GCWGC	1 cut(s)	362
AspLEI	GCGC	3 cut(s)	317, 335, 417
AspS9I	GGNCC	2 cut(s)	171, 422
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	3 cut(s)	127, 137, 198
AvaII	GGWCC	2 cut(s)	171, 422
BanI	GGYRCC	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	452
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	3 cut(s)	211, 360, 413
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	3 cut(s)	60, 353, 422
BfaI	CTAG	4 cut(s)	123, 377, 473, 485
BfoI	RGCGCY	1 cut(s)	336
BisI	GCNGC	3 cut(s)	198, 296, 363
BlsI	GCNGC	3 cut(s)	199, 297, 364
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	2 cut(s)	171, 422
BmgT120I	GGNCC	2 cut(s)	171, 422
BmiI	GGNNCC	2 cut(s)	306, 334
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	2 cut(s)	231, 402
BpiI	GAAGAC	1 cut(s)	452
Bpu10I	CCTNAGC	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	333
BsaWI	WCCGGW	4 cut(s)	58, 147, 173, 424
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse118I	RCCGGY	1 cut(s)	168
BseAI	TCCGGA	2 cut(s)	173, 424
BseGI	GGATG	2 cut(s)	222, 352
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseRI	GAGGAG	2 cut(s)	192, 292
BseXI	GCAGC	1 cut(s)	374
BsgI	GTGCAG	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	417
BshFI	GGCC	2 cut(s)	168, 295
BshNI	GGYRCC	1 cut(s)	332
BsiSI	CCGG	6 cut(s)	59, 148, 169, 174, 330, 425
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	3 cut(s)	60, 353, 422
BsmBI	CGTCTC	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	2 cut(s)	168, 295
Bsp13I	TCCGGA	2 cut(s)	173, 424
Bsp143I	GATC	4 cut(s)	246, 251, 259, 366
BspACI	CCGC	4 cut(s)	107, 198, 220, 296
BspANI	GGCC	2 cut(s)	168, 295
BspEI	TCCGGA	2 cut(s)	173, 424
BspFNI	CGCG	1 cut(s)	417
BspLI	GGNNCC	2 cut(s)	306, 334
BspPI	GGATC	3 cut(s)	254, 254, 259
BspT107I	GGYRCC	1 cut(s)	332
BsrFI	RCCGGY	1 cut(s)	168
BssAI	RCCGGY	1 cut(s)	168
BssMI	GATC	4 cut(s)	246, 251, 259, 366
BssNI	GRCGYC	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	1 cut(s)	269
BstACI	GRCGYC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	404
BstF5I	GGATG	2 cut(s)	222, 352
BstFNI	CGCG	1 cut(s)	417
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	3 cut(s)	317, 335, 417
BstKTI	GATC	4 cut(s)	249, 254, 262, 369
BstMAI	GTCTC	3 cut(s)	60, 353, 422
BstMBI	GATC	4 cut(s)	246, 251, 259, 366
BstSCI	CCNGG	1 cut(s)	328
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	1 cut(s)	374
BstV2I	GAAGAC	1 cut(s)	452
BsuRI	GGCC	2 cut(s)	168, 295
BtgZI	GCGATG	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	222, 352
CfoI	GCGC	3 cut(s)	317, 335, 417
Cfr10I	RCCGGY	1 cut(s)	168
Cfr13I	GGNCC	2 cut(s)	171, 422
CpoI	CGGWCCG	1 cut(s)	171
CspI	CGGWCCG	1 cut(s)	171
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	9 cut(s)	37, 122, 142, 168, 186, 295, 380, 494, 512
CviKI_1	RGCY	9 cut(s)	37, 122, 142, 168, 186, 295, 380, 494, 512
DdeI	CTNAG	1 cut(s)	404
DinI	GGCGCC	1 cut(s)	334
DpnI	GATC	4 cut(s)	248, 253, 261, 368
DpnII	GATC	4 cut(s)	246, 251, 259, 366
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	1 cut(s)	269
EarI	CTCTTC	1 cut(s)	269
Eco47I	GGWCC	2 cut(s)	171, 422
EgeI	GGCGCC	1 cut(s)	334
EheI	GGCGCC	1 cut(s)	334
Esp3I	CGTCTC	1 cut(s)	422
FaeI	CATG	1 cut(s)	167
FaiI	YATR	5 cut(s)	165, 241, 344, 359, 504
FalI	AAGNNNNNCTT	6 cut(s)	12, 44, 126, 158, 434, 466
FatI	CATG	1 cut(s)	163
Fnu4HI	GCNGC	3 cut(s)	198, 296, 363
FokI	GGATG	2 cut(s)	209, 339
Fsp4HI	GCNGC	3 cut(s)	198, 296, 363
FspBI	CTAG	4 cut(s)	123, 377, 473, 485
GlaI	GCGC	3 cut(s)	316, 334, 416
GluI	GCNGC	3 cut(s)	198, 296, 363
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	168, 295
HapII	CCGG	6 cut(s)	59, 148, 169, 174, 330, 425
HhaI	GCGC	3 cut(s)	317, 335, 417
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	1 cut(s)	167
Hin6I	GCGC	3 cut(s)	315, 333, 415
HinP1I	GCGC	3 cut(s)	315, 333, 415
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	6 cut(s)	59, 148, 169, 174, 330, 425
HphI	GGTGA	3 cut(s)	127, 137, 198
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	4 cut(s)	246, 251, 264, 304
Hpy188III	TCNNGA	4 cut(s)	42, 174, 271, 425
Hpy8I	GTNNAC	1 cut(s)	499
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	457
HpyCH4V	TGCA	2 cut(s)	4, 465
HpyF3I	CTNAG	1 cut(s)	404
HpySE526I	ACGT	1 cut(s)	457
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	167
HspAI	GCGC	3 cut(s)	315, 333, 415
KasI	GGCGCC	1 cut(s)	332
Kpn2I	TCCGGA	2 cut(s)	173, 424
Kzo9I	GATC	4 cut(s)	246, 251, 259, 366
LpnPI	CCDG	6 cut(s)	72, 161, 182, 187, 343, 438
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	2 cut(s)	231, 402
MaeI	CTAG	4 cut(s)	123, 377, 473, 485
MaeII	ACGT	1 cut(s)	457
MalI	GATC	4 cut(s)	248, 253, 261, 368
MboI	GATC	4 cut(s)	246, 251, 259, 366
MboII	GAAGA	7 cut(s)	29, 32, 85, 103, 286, 421, 457
Mly113I	GGCGCC	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	9 cut(s)	78, 97, 111, 170, 219, 245, 270, 346, 492
MroI	TCCGGA	2 cut(s)	173, 424
MseI	TTAA	1 cut(s)	158
MspI	CCGG	6 cut(s)	59, 148, 169, 174, 330, 425
MspR9I	CCNGG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	405
MvnI	CGCG	1 cut(s)	417
NarI	GGCGCC	1 cut(s)	333
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	4 cut(s)	246, 251, 259, 366
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	2 cut(s)	306, 334
NmeAIII	GCCGAG	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	2 cut(s)	255, 260
PctI	GAATGC	1 cut(s)	405
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	3 cut(s)	199, 297, 364
PleI	GAGTC	1 cut(s)	61
PluTI	GGCGCC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	61
PsiI	TTATAA	1 cut(s)	344
PspN4I	GGNNCC	2 cut(s)	306, 334
PspPI	GGNCC	2 cut(s)	171, 422
Rsr2I	CGGWCCG	1 cut(s)	171
RsrII	CGGWCCG	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	3 cut(s)	198, 296, 363
Sau3AI	GATC	4 cut(s)	246, 251, 259, 366
Sau96I	GGNCC	2 cut(s)	171, 422
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	330
SetI	ASST	7 cut(s)	39, 144, 211, 237, 452, 460, 514
SfaNI	GCATC	2 cut(s)	231, 402
SfoI	GGCGCC	1 cut(s)	334
SinI	GGWCC	2 cut(s)	171, 422
SsiI	CCGC	4 cut(s)	107, 198, 220, 296
SspDI	GGCGCC	1 cut(s)	332
SspMI	CTAG	4 cut(s)	123, 377, 473, 485
StyD4I	CCNGG	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	1 cut(s)	460
TaqI	TCGA	5 cut(s)	9, 41, 254, 270, 393
TauI	GCSGC	2 cut(s)	200, 298
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TseI	GCWGC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	92
Van91I	CCANNNNNTGG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	171, 422
XspI	CTAG	4 cut(s)	123, 377, 473, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.