Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010596

Physical Location & Seq

Genomic Coordinates Reverse (-)

486499 .. 487449

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGGAATCAACTGGTCCACTGTAAGGAATGTCATGGACATGAGAGCTGTATATGGGGGGTTTGCTGCAGCACTAAAAGACTTGAAAGTATGGGTTATGAATGTAGTCCCAGTTGACTCTCATGACACACTTCCAATAATCTATGAGCGCGGTTTCATTGGGATATATCATGATTGGTGTGAATCGTTCAGTACCTACCCCAGATCTTATGATCTTTTACATGCAGATCATCTATTCTCCGTCCTTAAGAAAAGATGCAGCTTAGTGGCAGCGATTGCAGAAGTTGATAGGATACTGAGGCCAGAAGGGAAACTAATTGTATGGGACAATGCTGAAACCTTAAATGAGATTGAGAGTCTGGCTAAATCTCTGCAATGGAACATCCGATTTACTTACTCAAAAGACAATGAGGGTTTGCTGTGCATTCAGAAGACGTTTTGGCGTCCCGCAGACAAGGAGAAAATTTTGTCAGCCATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005911 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009506 GO:0012505 GO:0016740 GO:0016741 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

161

Amino Acids

18.4

Weight (kDa)

6.42

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010596)

Species	Orthologous Gene IDs
malus_domestica	MD06G1039600.v1.1 MD13G1215200.v1.1
prunus_persica	Prupe.5G045100_v2.0.a1
pyrus_communis	pycom05g00430 pycom07g24350 pycom15g02370 pycom16g23870
rosa_chinensis	RchiOBHm_Chr4g0393521
rosa_laevigata	RLG00000006414 RLG00000007546 RLG00000009741 RLG00000012464
rosa_multiflora	Rmu_co8388373.1_g000001 Rmu_sc0004469.1_g000016 Rmu_sc0004884.1_g000002 Rmu_sc0006171.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086270 Rroxscaffold_3G00253570
rosa_samantha	Rh4BG043800 Rh5DG486700 Rh6CG274800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	150
AciI	CCGC	2 cut(s)	150, 447
AcsI	RAATTY	1 cut(s)	462
AcyI	GRCGYC	1 cut(s)	442
AfaI	GTAC	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	24
AflII	CTTAAG	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	85
AluBI	AGCT	2 cut(s)	47, 261
AluI	AGCT	2 cut(s)	47, 261
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	4 cut(s)	65, 68, 258, 269
ApoI	RAATTY	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	437
BbvI	GCAGC	4 cut(s)	52, 80, 270, 281
BciVI	GTATCC	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	245
BfuI	GTATCC	1 cut(s)	285
BglII	AGATCT	1 cut(s)	203
BisI	GCNGC	4 cut(s)	66, 69, 259, 270
BlsI	GCNGC	4 cut(s)	67, 70, 260, 271
Bme18I	GGWCC	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	104
BmsI	GCATC	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse1I	ACTGG	2 cut(s)	17, 110
Bse3DI	GCAATG	2 cut(s)	380, 474
BseGI	GGATG	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseMI	GCAATG	2 cut(s)	380, 474
BseMII	CTCAG	1 cut(s)	287
BseNI	ACTGG	2 cut(s)	17, 110
BseXI	GCAGC	4 cut(s)	52, 80, 270, 281
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	301
BslFI	GGGAC	3 cut(s)	92, 338, 429
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmFI	GGGAC	3 cut(s)	92, 338, 429
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	301
Bsp143I	GATC	3 cut(s)	203, 211, 226
BspACI	CCGC	2 cut(s)	150, 447
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	288
BspFNI	CGCG	1 cut(s)	150
BspHI	TCATGA	2 cut(s)	121, 169
BspMAI	CTGCAG	1 cut(s)	70
BspTI	CTTAAG	1 cut(s)	245
BsrDI	GCAATG	2 cut(s)	380, 474
BsrI	ACTGG	2 cut(s)	17, 110
BssMI	GATC	3 cut(s)	203, 211, 226
BssNI	GRCGYC	1 cut(s)	442
Bst4CI	ACNGT	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	442
BstAFI	CTTAAG	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstDEI	CTNAG	2 cut(s)	262, 296
BstF5I	GGATG	1 cut(s)	381
BstFNI	CGCG	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	3 cut(s)	206, 214, 229
BstMBI	GATC	3 cut(s)	203, 211, 226
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	224
BstSFI	CTRYAG	1 cut(s)	66
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	4 cut(s)	52, 80, 270, 281
BstV2I	GAAGAC	1 cut(s)	437
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	18
CciI	TCATGA	2 cut(s)	121, 169
CfoI	GCGC	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	15
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	5 cut(s)	34, 40, 122, 170, 221
CviJI	RGCY	5 cut(s)	47, 261, 301, 362, 473
CviKI_1	RGCY	5 cut(s)	47, 261, 301, 362, 473
CviQI	GTAC	1 cut(s)	192
DdeI	CTNAG	2 cut(s)	262, 296
DpnI	GATC	3 cut(s)	205, 213, 228
DpnII	GATC	3 cut(s)	203, 211, 226
Eco47I	GGWCC	1 cut(s)	15
FaeI	CATG	5 cut(s)	37, 43, 125, 173, 224
FaqI	GGGAC	3 cut(s)	92, 338, 429
FatI	CATG	5 cut(s)	33, 39, 121, 169, 220
FauI	CCCGC	1 cut(s)	454
Fnu4HI	GCNGC	4 cut(s)	66, 69, 259, 270
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	4 cut(s)	66, 69, 259, 270
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	4 cut(s)	66, 69, 259, 270
HaeIII	GGCC	1 cut(s)	301
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	1 cut(s)	150
Hin1I	GRCGYC	1 cut(s)	442
Hin1II	CATG	5 cut(s)	37, 43, 125, 173, 224
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	4 cut(s)	6, 116, 182, 355
Hpy166II	GTNNAC	2 cut(s)	18, 115
Hpy188I	TCNGA	2 cut(s)	386, 429
Hpy188III	TCNNGA	2 cut(s)	122, 170
Hpy8I	GTNNAC	2 cut(s)	18, 115
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	6 cut(s)	68, 224, 258, 278, 373, 423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	2 cut(s)	262, 296
HpySE526I	ACGT	1 cut(s)	434
Hsp92I	GRCGYC	1 cut(s)	442
Hsp92II	CATG	5 cut(s)	37, 43, 125, 173, 224
HspAI	GCGC	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	203, 211, 226
LpnPI	CCDG	4 cut(s)	123, 214, 315, 344
Lsp1109I	GCAGC	4 cut(s)	52, 80, 270, 281
LweI	GCATC	1 cut(s)	245
MaeII	ACGT	1 cut(s)	434
MalI	GATC	3 cut(s)	205, 213, 228
MboI	GATC	3 cut(s)	203, 211, 226
MboII	GAAGA	1 cut(s)	442
MflI	RGATCY	1 cut(s)	203
MluCI	AATT	2 cut(s)	315, 462
MlyI	GAGTC	2 cut(s)	110, 364
MnlI	CCTC	2 cut(s)	291, 403
MseI	TTAA	3 cut(s)	246, 341, 481
MslI	CAYNNNNRTG	1 cut(s)	38
MspCI	CTTAAG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	423
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	3 cut(s)	203, 211, 226
NlaIII	CATG	5 cut(s)	37, 43, 125, 173, 224
NspI	RCATGY	1 cut(s)	224
PagI	TCATGA	2 cut(s)	121, 169
PctI	GAATGC	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	6, 182
PkrI	GCNGC	4 cut(s)	67, 70, 260, 271
PleI	GAGTC	2 cut(s)	110, 363
PpsI	GAGTC	2 cut(s)	110, 363
PspPI	GGNCC	1 cut(s)	15
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	203
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	3 cut(s)	246, 341, 481
SatI	GCNGC	4 cut(s)	66, 69, 259, 270
Sau3AI	GATC	3 cut(s)	203, 211, 226
Sau96I	GGNCC	1 cut(s)	15
SchI	GAGTC	2 cut(s)	110, 364
SetI	ASST	5 cut(s)	49, 197, 263, 341, 437
SfaNI	GCATC	1 cut(s)	245
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	1 cut(s)	15
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	315, 462
SsiI	CCGC	2 cut(s)	150, 447
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	437
TasI	AATT	2 cut(s)	315, 462
TfiI	GAWTC	2 cut(s)	6, 182
Tru1I	TTAA	3 cut(s)	246, 341, 481
Tru9I	TTAA	3 cut(s)	246, 341, 481
TscAI	CASTG	1 cut(s)	25
TseI	GCWGC	4 cut(s)	65, 68, 258, 269
TspDTI	ATGAA	2 cut(s)	113, 145
TspGWI	ACGGA	1 cut(s)	229
TspRI	CASTG	1 cut(s)	25
Vha464I	CTTAAG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	15
XapI	RAATTY	1 cut(s)	462
XceI	RCATGY	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.