Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002522

Physical Location & Seq

Genomic Coordinates Reverse (-)

25103165 .. 25107286

Gene Structure 4122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1173300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1899 bp

ATGGCGTGCTTGAAGCTGGGATCCAAATCTGAAGTGTTTTACCTTGATGGCCAAACTTGGCTTTGCTCAACTGGACTTGCTAGTGATGTCATTGTTGAAGTTGGAGAAACGTCCTTCCATCTCCACAAGTTTCCGTTGCTATCCAGAAGTGGATTACTAGAAAACATTATTGGAGAACTTTCTAGCGAGGATGATCAGAAATGCATGGTGCAACTGAATGACATTCCAGGTGGAGCCAAAATTTTTTTGCTGGTAGCCAAATTTTGTTACGGTGTAAGAATAGAACTGAACGCGTTGAATGTAGTTAGTGTAAGGTGCGCTGCTGAGCATCTTCGCATGAGTGAAGAATATGGAGAGGGAAACCTCATCACACAAGCGGAGGATTTTCTAAACGAAATCTTCAGCAATTGGAGTGACTCCATTAAAGCACTTGAAACCTGCGAAGAGGTCTTGCCTCATGCAGAAGAGCTTCATCTTGTTTCGAGATGCATCAATTCATTGGCAATGAAAGCGAGTGCCGATCCAGGTTTATTTAGTTGGCCTGTGTCGGGAAAGAAGGCCTTGCAGAGCTCAGAGGGTGCGGTGTTTTGGAATGGAATATGCACGACAGCAAAGCCACATCCAGTCAGTGAAGATTGGTGGTATGAAGATGTCTCATTTCTTAAGTTTCCATTTTTCAAGAGGCTGATTCGAGCAGTTGAATTAGGAGGCATGAACCAAGAGAGGAAGGCTGGCTCCATAATGCACTATGCAAAGAGGCACCTTTCCTTGTTGGGTAGGCAATCGAGTTTCCATAATGGAAATCGTGCTGCCCCGTTATCAACTGTTCCTGCTGCATCTGATGGAGAGCAAATGACTCTCCTTGAGGAGATTGTGGGATTACTTCCTGATCAGAAGGGCGTTGTGCCAACGAACTTCCTGCTTAGGCTTCTCCGAACATCTATGATTTTGCAAGCTAGTGCATCATGTTGTGAGAGCTTAGAGAAACGAGTTGGGGCTCAATTGGATCAAGCAGCTCTTAAAGATCTTCTGATACCAAACATGGGGTACTCAGTGGAGACCCTATATGATATTGACTGCATTCAGCGGATTCTTGACCACTTCATTCTCATGGACCGCGATTCGATTGATTATACTTCTAGCTGTATTGTTGATGAGGGCGCTTCTCATTCGCTGACTGCAATAACCTCGGTGGCTAACCTGATTGATGGATATCTGGCTGAAGTTGCACCTGATGTTAACTTGAAACAGCAGAAATTTCAGTCGCTAGCTGCTGTTATCCCGGAATATGCCAGACCATTAGATGATGGAATTTATCGCGCCATTGATTTATACCTCAAGGCCCATCCTTGGCTGACAGACTCCGAGAGGGAACAAATCTGCCGGCTCATGAACTGCCAGAAGCTCTCATTGGAAGCCAGCACGCACGCAGCGCAGAATGAGAGGCTACCGCTTCGCGTCATCGTCCAAGTTCTATTCTTCGAACAGCTTCGCCTGCGCACATCAATTTCCGGTTGGTTCTTTGTATCTGAGAACCTCGAGATCTCACAAAACCAAAGTAGAAATCTTGCGCTTGCTCGAAATGAGGCACCTGCTCAAGCTAGCACTGTGCGGCGTGTGCGCGATCATTTTGTAACAGTTGATGACATGAGGGAACGAGTTTCGGAGCTCGAGAAAGAGTGCTTGAGCATGAAGCAAGAGATTGAGAAGCTGGTGAAGACAAAGGGGAGTTGGAACACATTCTTGAAGAGGTTTGGTTTGAGGCTCAAGTTAAAATCTGATGCAGAAAAAGCACGCAAACCCTGCAATAATTCCAAAGAACAACCAACATCCATAGGTCCACCAGTGAATGGAAAACAAAATTATGAAAATTATGAAAATAATAAATTAAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

633

Amino Acids

70.92

Weight (kDa)

5.74

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	25 - 114	6.6e-07	BTB/POZ domain
NPH3	PF03000	212 - 474	9.3e-93	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03250 AT5G03250
fragaria_vesca	FvH4_6g16010 FvH4_7g19310 FvH4_7g19310 FvH4_7g19310
malus_domestica	MD01G1107700.v1.1 MD04G1096800.v1.1 MD07G1173300.v1.1
prunus_persica	Prupe.2G212500_v2.0.a1 Prupe.6G236100_v2.0.a1
pyrus_communis	pycom01g13460 pycom04g09190 pycom07g16800 pycom12g11690
rosa_chinensis	RchiOBHm_Chr1g0363191 RchiOBHm_Chr3g0469731
rosa_laevigata	RLG00000024326 RLG00000027585
rosa_multiflora	Rmu_sc0002925.1_g000004 Rmu_sc0010644.1_g000001 Rmu_sc0022819.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293390 Rroxscaffold_6G00411520
rosa_rugosa	Rorug01G0305300 Rorug03G0103400 Rorug03G0103500 Rorug03G0103600 Rorug03G0103700 Rorug03G0103800 Rorug03G0103800
rosa_samantha	Rh1AG314100 Rh1BG277600 Rh1CG294000 Rh1DG308300 Rh3AG153200 Rh3BG177200 Rh3CG168100 Rh3DG198400
rosa_wichuraiana	Rw1G027830 Rw3G014440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1600
Acc16I	TGCGCA	1 cut(s)	1499
Acc36I	ACCTGC	2 cut(s)	446, 1600
AccB1I	GGYRCC	2 cut(s)	759, 1588
AccB7I	CCANNNNNTGG	1 cut(s)	1850
AccII	CGCG	5 cut(s)	293, 1119, 1320, 1458, 1623
AciI	CCGC	6 cut(s)	377, 581, 1087, 1117, 1451, 1612
AclWI	GGATC	4 cut(s)	15, 28, 515, 1014
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	4 cut(s)	240, 260, 1256, 1311
AcuI	CTGAAG	3 cut(s)	51, 385, 1242
AfaI	GTAC	1 cut(s)	1049
AfiI	CCNNNNNNNGG	4 cut(s)	548, 1043, 1350, 1850
AflII	CTTAAG	1 cut(s)	662
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	8 cut(s)	13, 98, 298, 434, 679, 701, 1246, 1747
AjnI	CCWGG	2 cut(s)	226, 523
AjuI	GAANNNNNNNTTGG	4 cut(s)	153, 185, 1394, 1426
Alw21I	GWGCWC	2 cut(s)	572, 1671
Alw26I	GTCTC	2 cut(s)	658, 1052
AlwI	GGATC	4 cut(s)	15, 28, 515, 1014
Ama87I	CYCGRG	2 cut(s)	1538, 1670
AoxI	GGCC	4 cut(s)	49, 539, 558, 1341
ApeKI	GCWGC	6 cut(s)	320, 809, 833, 1013, 1271, 1430
ApoI	RAATTY	4 cut(s)	240, 260, 1256, 1311
Asp700I	GAANNNNTTC	3 cut(s)	468, 1488, 1739
AspLEI	GCGC	7 cut(s)	320, 1163, 1322, 1435, 1500, 1573, 1623
AspS9I	GGNCC	3 cut(s)	1114, 1342, 1838
AsuC2I	CCSGG	1 cut(s)	1283
AsuHPI	GGTGA	1 cut(s)	1726
AsuII	TTCGAA	1 cut(s)	1482
AsuNHI	GCTAGC	2 cut(s)	1267, 1601
AvaI	CYCGRG	2 cut(s)	1538, 1670
AvaII	GGWCC	2 cut(s)	1114, 1838
BalI	TGGCCA	1 cut(s)	51
BamHI	GGATCC	1 cut(s)	20
BanI	GGYRCC	2 cut(s)	759, 1588
BanII	GRGCYC	3 cut(s)	572, 1000, 1671
BbsI	GAAGAC	1 cut(s)	1724
Bbv12I	GWGCWC	2 cut(s)	572, 1671
BbvI	GCAGC	6 cut(s)	307, 796, 820, 1025, 1258, 1442
BccI	CCATC	6 cut(s)	41, 126, 836, 1202, 1301, 1353
BcgI	CGANNNNNNTGC	4 cut(s)	901, 935, 1170, 1204
BciT130I	CCWGG	2 cut(s)	228, 525
BclI	TGATCA	2 cut(s)	193, 889
BcnI	CCSGG	1 cut(s)	1283
BcoDI	GTCTC	2 cut(s)	658, 1052
BfaI	CTAG	7 cut(s)	81, 158, 183, 957, 1140, 1268, 1602
BfoI	RGCGCY	1 cut(s)	1164
BfrI	CTTAAG	1 cut(s)	662
BfuAI	ACCTGC	2 cut(s)	446, 1600
BglII	AGATCT	2 cut(s)	1024, 1542
BisI	GCNGC	7 cut(s)	321, 810, 834, 1014, 1272, 1431, 1613
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	7 cut(s)	322, 811, 835, 1015, 1273, 1432, 1614
Bme1390I	CCNGG	3 cut(s)	228, 525, 1283
Bme18I	GGWCC	2 cut(s)	1114, 1838
BmeT110I	CYCGRG	2 cut(s)	1538, 1670
BmgT120I	GGNCC	3 cut(s)	1114, 1342, 1838
BmiI	GGNNCC	5 cut(s)	22, 235, 736, 761, 1590
BmrFI	CCNGG	3 cut(s)	228, 525, 1283
BmsI	GCATC	6 cut(s)	337, 476, 498, 845, 971, 1771
BmtI	GCTAGC	2 cut(s)	1271, 1605
BpiI	GAAGAC	1 cut(s)	1724
Bpu10I	CCTNAGC	1 cut(s)	923
Bpu1102I	GCTNAGC	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	1482
BpuEI	CTTGAG	5 cut(s)	884, 1322, 1581, 1705, 1751
BpuMI	CCSGG	1 cut(s)	1283
BsaBI	GATNNNNATC	2 cut(s)	25, 1212
BsaI	GGTCTC	1 cut(s)	1052
BsaJI	CCNNGG	2 cut(s)	1188, 1349
BsaWI	WCCGGW	1 cut(s)	1511
Bsc4I	CCNNNNNNNGG	4 cut(s)	548, 1043, 1350, 1850
Bse118I	RCCGGY	1 cut(s)	1383
Bse1I	ACTGG	3 cut(s)	76, 623, 1844
Bse3DI	GCAATG	1 cut(s)	510
Bse8I	GATNNNNATC	2 cut(s)	25, 1212
BseBI	CCWGG	2 cut(s)	228, 525
BseDI	CCNNGG	2 cut(s)	1188, 1349
BseGI	GGATG	4 cut(s)	196, 619, 1345, 1829
BseJI	GATNNNNATC	2 cut(s)	25, 1212
BseLI	CCNNNNNNNGG	4 cut(s)	548, 1043, 1350, 1850
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	4 cut(s)	315, 585, 1065, 1521
BseNI	ACTGG	3 cut(s)	76, 623, 1844
BseRI	GAGGAG	1 cut(s)	881
BseXI	GCAGC	6 cut(s)	307, 796, 820, 1025, 1258, 1442
BseYI	CCCAGC	1 cut(s)	16
Bsh1236I	CGCG	5 cut(s)	293, 1119, 1320, 1458, 1623
BshFI	GGCC	4 cut(s)	51, 541, 560, 1343
BshNI	GGYRCC	2 cut(s)	759, 1588
BsiHKAI	GWGCWC	2 cut(s)	572, 1671
BsiHKCI	CYCGRG	2 cut(s)	1538, 1670
BsiSI	CCGG	3 cut(s)	1283, 1384, 1512
BslI	CCNNNNNNNGG	4 cut(s)	548, 1043, 1350, 1850
BsmAI	GTCTC	2 cut(s)	658, 1052
BsmI	GAATGC	1 cut(s)	1080
BsnI	GGCC	4 cut(s)	51, 541, 560, 1343
Bso31I	GGTCTC	1 cut(s)	1052
BsoBI	CYCGRG	2 cut(s)	1538, 1670
Bsp119I	TTCGAA	1 cut(s)	1482
Bsp1286I	GDGCHC	3 cut(s)	572, 1000, 1671
Bsp143I	GATC	8 cut(s)	20, 193, 520, 889, 1006, 1024, 1542, 1624
Bsp1720I	GCTNAGC	1 cut(s)	324
BspACI	CCGC	6 cut(s)	377, 581, 1087, 1117, 1451, 1612
BspANI	GGCC	4 cut(s)	51, 541, 560, 1343
BspCNI	CTCAG	4 cut(s)	316, 584, 1064, 1522
BspFNI	CGCG	5 cut(s)	293, 1119, 1320, 1458, 1623
BspHI	TCATGA	1 cut(s)	1389
BspLI	GGNNCC	5 cut(s)	22, 235, 736, 761, 1590
BspMI	ACCTGC	2 cut(s)	446, 1600
BspOI	GCTAGC	2 cut(s)	1271, 1605
BspPI	GGATC	4 cut(s)	15, 28, 515, 1014
BspQI	GCTCTTC	1 cut(s)	459
BspT104I	TTCGAA	1 cut(s)	1482
BspT107I	GGYRCC	2 cut(s)	759, 1588
BspTI	CTTAAG	1 cut(s)	662
BspTNI	GGTCTC	1 cut(s)	1052
BsrDI	GCAATG	1 cut(s)	510
BsrFI	RCCGGY	1 cut(s)	1383
BsrI	ACTGG	3 cut(s)	76, 623, 1844
BssAI	RCCGGY	1 cut(s)	1383
BssECI	CCNNGG	2 cut(s)	1188, 1349
BssMI	GATC	8 cut(s)	20, 193, 520, 889, 1006, 1024, 1542, 1624
BssT1I	CCWWGG	1 cut(s)	1349
Bst2UI	CCWGG	2 cut(s)	228, 525
Bst4CI	ACNGT	4 cut(s)	272, 826, 1609, 1639
Bst6I	CTCTTC	3 cut(s)	438, 459, 1742
BstAFI	CTTAAG	1 cut(s)	662
BstAPI	GCANNNNNTGC	1 cut(s)	1803
BstBI	TTCGAA	1 cut(s)	1482
BstDEI	CTNAG	6 cut(s)	324, 571, 923, 979, 1051, 1530
BstF5I	GGATG	4 cut(s)	196, 619, 1345, 1829
BstFNI	CGCG	5 cut(s)	293, 1119, 1320, 1458, 1623
BstH2I	RGCGCY	1 cut(s)	1164
BstHHI	GCGC	7 cut(s)	320, 1163, 1322, 1435, 1500, 1573, 1623
BstKTI	GATC	8 cut(s)	23, 196, 523, 892, 1009, 1027, 1545, 1627
BstMAI	GTCTC	2 cut(s)	658, 1052
BstMBI	GATC	8 cut(s)	20, 193, 520, 889, 1006, 1024, 1542, 1624
BstMWI	GCNNNNNNNGC	7 cut(s)	509, 1226, 1432, 1495, 1618, 1790, 1803
BstNI	CCWGG	2 cut(s)	228, 525
BstSCI	CCNGG	3 cut(s)	226, 523, 1281
BstUI	CGCG	5 cut(s)	293, 1119, 1320, 1458, 1623
BstV1I	GCAGC	6 cut(s)	307, 796, 820, 1025, 1258, 1442
BstV2I	GAAGAC	1 cut(s)	1724
BstX2I	RGATCY	3 cut(s)	20, 1024, 1542
BstYI	RGATCY	3 cut(s)	20, 1024, 1542
BsuRI	GGCC	4 cut(s)	51, 541, 560, 1343
BtsCI	GGATG	4 cut(s)	196, 619, 1345, 1829
BtsIMutI	CAGTG	4 cut(s)	634, 1059, 1605, 1851
BveI	ACCTGC	2 cut(s)	446, 1600
CciI	TCATGA	1 cut(s)	1389
CfoI	GCGC	7 cut(s)	320, 1163, 1322, 1435, 1500, 1573, 1623
Cfr10I	RCCGGY	1 cut(s)	1383
Cfr13I	GGNCC	3 cut(s)	1114, 1342, 1838
CseI	GACGC	1 cut(s)	1447
Csp6I	GTAC	1 cut(s)	1048
CviQI	GTAC	1 cut(s)	1048
DdeI	CTNAG	6 cut(s)	324, 571, 923, 979, 1051, 1530
DpnI	GATC	8 cut(s)	22, 195, 522, 891, 1008, 1026, 1544, 1626
DpnII	GATC	8 cut(s)	20, 193, 520, 889, 1006, 1024, 1542, 1624
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	3 cut(s)	438, 459, 1742
EarI	CTCTTC	3 cut(s)	438, 459, 1742
Ecl136II	GAGCTC	2 cut(s)	570, 1669
Eco130I	CCWWGG	1 cut(s)	1349
Eco147I	AGGCCT	1 cut(s)	560
Eco24I	GRGCYC	3 cut(s)	572, 1000, 1671
Eco31I	GGTCTC	1 cut(s)	1052
Eco32I	GATATC	1 cut(s)	1214
Eco47I	GGWCC	2 cut(s)	1114, 1838
Eco53kI	GAGCTC	2 cut(s)	570, 1669
Eco57I	CTGAAG	3 cut(s)	51, 385, 1242
Eco88I	CYCGRG	2 cut(s)	1538, 1670
EcoICRI	GAGCTC	2 cut(s)	570, 1669
EcoRII	CCWGG	2 cut(s)	226, 523
EcoRV	GATATC	1 cut(s)	1214
EcoT14I	CCWWGG	1 cut(s)	1349
EcoT22I	ATGCAT	2 cut(s)	206, 491
EcoT38I	GRGCYC	3 cut(s)	572, 1000, 1671
ErhI	CCWWGG	1 cut(s)	1349
FalI	AAGNNNNNCTT	4 cut(s)	545, 577, 1002, 1034
FbaI	TGATCA	2 cut(s)	193, 889
Fnu4HI	GCNGC	7 cut(s)	321, 810, 834, 1014, 1272, 1431, 1613
FokI	GGATG	4 cut(s)	203, 606, 1332, 1816
FriOI	GRGCYC	3 cut(s)	572, 1000, 1671
Fsp4HI	GCNGC	7 cut(s)	321, 810, 834, 1014, 1272, 1431, 1613
FspBI	CTAG	7 cut(s)	81, 158, 183, 957, 1140, 1268, 1602
FspI	TGCGCA	1 cut(s)	1499
GlaI	GCGC	7 cut(s)	319, 1162, 1321, 1434, 1499, 1572, 1622
GluI	GCNGC	7 cut(s)	321, 810, 834, 1014, 1272, 1431, 1613
GsaI	CCCAGC	1 cut(s)	20
HaeII	RGCGCY	1 cut(s)	1164
HaeIII	GGCC	4 cut(s)	51, 541, 560, 1343
HapII	CCGG	3 cut(s)	1283, 1384, 1512
HgaI	GACGC	1 cut(s)	1447
HhaI	GCGC	7 cut(s)	320, 1163, 1322, 1435, 1500, 1573, 1623
Hin6I	GCGC	7 cut(s)	318, 1161, 1320, 1433, 1498, 1571, 1621
HinP1I	GCGC	7 cut(s)	318, 1161, 1320, 1433, 1498, 1571, 1621
HincII	GTYRAC	1 cut(s)	1240
HindII	GTYRAC	1 cut(s)	1240
HinfI	GANTC	6 cut(s)	416, 688, 856, 1090, 1121, 1361
HpaI	GTTAAC	1 cut(s)	1240
HpaII	CCGG	3 cut(s)	1283, 1384, 1512
HphI	GGTGA	1 cut(s)	1726
Hpy166II	GTNNAC	2 cut(s)	1240, 1841
Hpy8I	GTNNAC	2 cut(s)	1240, 1841
HpyAV	CCTTC	4 cut(s)	124, 550, 721, 889
HpyCH4III	ACNGT	4 cut(s)	272, 826, 1609, 1639
HpyCH4IV	ACGT	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	7 cut(s)	509, 1226, 1432, 1495, 1618, 1790, 1803
HpyF3I	CTNAG	6 cut(s)	324, 571, 923, 979, 1051, 1530
HpySE526I	ACGT	1 cut(s)	110
HspAI	GCGC	7 cut(s)	318, 1161, 1320, 1433, 1498, 1571, 1621
KroI	GCCGGC	1 cut(s)	1383
KroNI	GCCGGC	1 cut(s)	1385
Ksp22I	TGATCA	2 cut(s)	193, 889
KspAI	GTTAAC	1 cut(s)	1240
Kzo9I	GATC	8 cut(s)	20, 193, 520, 889, 1006, 1024, 1542, 1624
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	3 cut(s)	233, 740, 1666
Lsp1109I	GCAGC	6 cut(s)	307, 796, 820, 1025, 1258, 1442
LweI	GCATC	6 cut(s)	337, 476, 498, 845, 971, 1771
MaeI	CTAG	7 cut(s)	81, 158, 183, 957, 1140, 1268, 1602
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	3 cut(s)	266, 413, 1633
MalI	GATC	8 cut(s)	22, 195, 522, 891, 1008, 1026, 1544, 1626
MboI	GATC	8 cut(s)	20, 193, 520, 889, 1006, 1024, 1542, 1624
MfeI	CAATTG	2 cut(s)	406, 1001
MflI	RGATCY	3 cut(s)	20, 1024, 1542
MhlI	GDGCHC	3 cut(s)	572, 1000, 1671
MlsI	TGGCCA	1 cut(s)	51
MluI	ACGCGT	1 cut(s)	291
MluNI	TGGCCA	1 cut(s)	51
MlyI	GAGTC	3 cut(s)	410, 850, 1355
MmeI	TCCRAC	2 cut(s)	82, 1712
Mox20I	TGGCCA	1 cut(s)	51
Mph1103I	ATGCAT	2 cut(s)	206, 491
MroNI	GCCGGC	1 cut(s)	1383
MroXI	GAANNNNTTC	3 cut(s)	468, 1488, 1739
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	6 cut(s)	423, 663, 1020, 1239, 1772, 1889
MslI	CAYNNNNRTG	1 cut(s)	1109
Msp20I	TGGCCA	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	1087
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	3 cut(s)	1283, 1384, 1512
MspR9I	CCNGG	3 cut(s)	228, 525, 1283
MunI	CAATTG	2 cut(s)	406, 1001
Mva1269I	GAATGC	1 cut(s)	1080
MvaI	CCWGG	2 cut(s)	228, 525
MvnI	CGCG	5 cut(s)	293, 1119, 1320, 1458, 1623
MwoI	GCNNNNNNNGC	7 cut(s)	509, 1226, 1432, 1495, 1618, 1790, 1803
NaeI	GCCGGC	1 cut(s)	1385
NciI	CCSGG	1 cut(s)	1283
NdeII	GATC	8 cut(s)	20, 193, 520, 889, 1006, 1024, 1542, 1624
NgoMIV	GCCGGC	1 cut(s)	1383
NheI	GCTAGC	2 cut(s)	1267, 1601
NlaIV	GGNNCC	5 cut(s)	22, 235, 736, 761, 1590
NmuCI	GTSAC	1 cut(s)	413
NsbI	TGCGCA	1 cut(s)	1499
NsiI	ATGCAT	2 cut(s)	206, 491
NspV	TTCGAA	1 cut(s)	1482
PaeR7I	CTCGAG	2 cut(s)	1538, 1670
PagI	TCATGA	1 cut(s)	1389
PaqCI	CACCTGC	1 cut(s)	1600
PceI	AGGCCT	1 cut(s)	560
PciSI	GCTCTTC	1 cut(s)	459
PctI	GAATGC	1 cut(s)	1080
PdiI	GCCGGC	1 cut(s)	1385
PdmI	GAANNNNTTC	3 cut(s)	468, 1488, 1739
PfeI	GAWTC	3 cut(s)	688, 1090, 1121
PflMI	CCANNNNNTGG	1 cut(s)	1850
PfoI	TCCNGGA	1 cut(s)	1281
PkrI	GCNGC	7 cut(s)	322, 811, 835, 1015, 1273, 1432, 1614
PleI	GAGTC	3 cut(s)	410, 850, 1355
PpsI	GAGTC	3 cut(s)	410, 850, 1355
Psp124BI	GAGCTC	2 cut(s)	572, 1671
Psp6I	CCWGG	2 cut(s)	226, 523
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	2 cut(s)	226, 523
PspN4I	GGNNCC	5 cut(s)	22, 235, 736, 761, 1590
PspPI	GGNCC	3 cut(s)	1114, 1342, 1838
PsuI	RGATCY	3 cut(s)	20, 1024, 1542
RsaI	GTAC	1 cut(s)	1049
RsaNI	GTAC	1 cut(s)	1048
RseI	CAYNNNNRTG	1 cut(s)	1109
SacI	GAGCTC	2 cut(s)	572, 1671
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	6 cut(s)	423, 663, 1020, 1239, 1772, 1889
SatI	GCNGC	7 cut(s)	321, 810, 834, 1014, 1272, 1431, 1613
Sau3AI	GATC	8 cut(s)	20, 193, 520, 889, 1006, 1024, 1542, 1624
Sau96I	GGNCC	3 cut(s)	1114, 1342, 1838
SchI	GAGTC	3 cut(s)	410, 850, 1355
ScrFI	CCNGG	3 cut(s)	228, 525, 1283
SduI	GDGCHC	3 cut(s)	572, 1000, 1671
SfaNI	GCATC	6 cut(s)	337, 476, 498, 845, 971, 1771
Sfr274I	CTCGAG	2 cut(s)	1538, 1670
SfuI	TTCGAA	1 cut(s)	1482
SinI	GGWCC	2 cut(s)	1114, 1838
SlaI	CTCGAG	2 cut(s)	1538, 1670
SmiMI	CAYNNNNRTG	1 cut(s)	1109
SmlI	CTYRAG	8 cut(s)	662, 863, 1337, 1538, 1596, 1670, 1684, 1766
SmoI	CTYRAG	8 cut(s)	662, 863, 1337, 1538, 1596, 1670, 1684, 1766
SseBI	AGGCCT	1 cut(s)	560
SsiI	CCGC	6 cut(s)	377, 581, 1087, 1117, 1451, 1612
SspMI	CTAG	7 cut(s)	81, 158, 183, 957, 1140, 1268, 1602
SstI	GAGCTC	2 cut(s)	572, 1671
StuI	AGGCCT	1 cut(s)	560
StyD4I	CCNGG	3 cut(s)	226, 523, 1281
StyI	CCWWGG	1 cut(s)	1349
TaaI	ACNGT	4 cut(s)	272, 826, 1609, 1639
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	8 cut(s)	482, 691, 785, 1124, 1482, 1539, 1579, 1671
TauI	GCSGC	1 cut(s)	1615
TfiI	GAWTC	3 cut(s)	688, 1090, 1121
Tru1I	TTAA	6 cut(s)	423, 663, 1020, 1239, 1772, 1889
Tru9I	TTAA	6 cut(s)	423, 663, 1020, 1239, 1772, 1889
TscAI	CASTG	4 cut(s)	634, 1059, 1612, 1851
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	6 cut(s)	320, 809, 833, 1013, 1271, 1430
Tsp45I	GTSAC	1 cut(s)	413
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	4 cut(s)	634, 1059, 1612, 1851
Van91I	CCANNNNNTGG	1 cut(s)	1850
Vha464I	CTTAAG	1 cut(s)	662
VpaK11BI	GGWCC	2 cut(s)	1114, 1838
XapI	RAATTY	4 cut(s)	240, 260, 1256, 1311
XhoI	CTCGAG	2 cut(s)	1538, 1670
XmnI	GAANNNNTTC	3 cut(s)	468, 1488, 1739
XspI	CTAG	7 cut(s)	81, 158, 183, 957, 1140, 1268, 1602
Zsp2I	ATGCAT	2 cut(s)	206, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.