Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002522

Physical Location & Seq

Genomic Coordinates Forward (+)

8132888 .. 8134237

Gene Structure 1350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0103500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCCTGCCTTAATGCCTGAAACACCCCTTCATGGAATTCATGGATTGGGAAGGGACAACAGTACTACTACTCCTTCACATCCTAGAAGGTTGGAGGGAAAAGTTGCTATAGTAACGGGCGGTGCACGAGGCATAGGAGAAGCAACAGCGAGGCTTTTCACAAGGCACGGCGCCAAAGTAGTCATTGCCGATGTGGAGGACTCTATCGGCACAACCCTGGCCAATTCCTTAGGCCCTTCAGTCACCTTCGTTCACTGCGACGTCAGCCTCGAAGAAGACATCGAAAACCTAATCGAGTCCACCGTCTCCCGCTACGGCCAGCTCGACATTATGTTCAACAACGCCGGAATCCTCGGCAACCAATCCAAACACAAGAGCATCGTCAACTTCGACGTCGACGAGTTCGACCGCGTGATGCGCGTGAACGTGAGAGGCACGGCCTTGGGGATCAAGCATGCGGCGCGTGTGATGATCCCCAGGGGAGGAGGCTGCATTATTTCAACCGCGAGCGTCGCCGGAGTCGCTGGTGGGTTAGGGCCGCATGCCTACACAGCTTCCAAGCATGCCATTGTTGGGCTGACGAAGAACGCCGCCTGTGAACTAGGCCGGTATGGGATCAGAGTGAACTGTATTTCGCCTTTTGGAGTTGCCACGCCGATGCTGGTGAATGCGTGGAGGATGAGTGACGATGACGAAGAGGAAGAAGAGTGTATGGATTTTGGGATGCCTTGTGAGCAAGAGGTGGAGAACATGGAAGATTTCGTGAGAGGGCTTGCGAATTTGAAAGGCCCGACTTTGAGGGCTAAGGACATAGCCGAGGCTGCTCTATATCTTGCTAGTGATGAGTCCAAGTATGTAAGTGGTCATAATCTGGTTGTGGATGGTGGAATTACTACCTCAAGAAATTGTGTTGGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

306

Amino Acids

32.56

Weight (kDa)

5.48

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	34 - 225	1e-50	short chain dehydrogenase
KR	PF08659	37 - 190	2.7e-11	KR domain
adh_short_C2	PF13561	41 - 227	7.6e-50	Enoyl-(Acyl carrier protein) reductase
adh_short_C2	PF13561	249 - 298	7e-09	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03250 AT5G03250
fragaria_vesca	FvH4_6g16010 FvH4_7g19310 FvH4_7g19310 FvH4_7g19310
malus_domestica	MD01G1107700.v1.1 MD04G1096800.v1.1 MD07G1173300.v1.1
prunus_persica	Prupe.2G212500_v2.0.a1 Prupe.6G236100_v2.0.a1
pyrus_communis	pycom01g13460 pycom04g09190 pycom07g16800 pycom12g11690
rosa_chinensis	RchiOBHm_Chr1g0363191 RchiOBHm_Chr3g0469731
rosa_laevigata	RLG00000024326 RLG00000027585
rosa_multiflora	Rmu_sc0002925.1_g000004 Rmu_sc0010644.1_g000001 Rmu_sc0022819.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293390 Rroxscaffold_6G00411520
rosa_rugosa	Rorug01G0305300 Rorug03G0103400 Rorug03G0103500 Rorug03G0103600 Rorug03G0103700 Rorug03G0103800 Rorug03G0103800
rosa_samantha	Rh1AG314100 Rh1BG277600 Rh1CG294000 Rh1DG308300 Rh3AG153200 Rh3BG177200 Rh3CG168100 Rh3DG198400
rosa_wichuraiana	Rw1G027830 Rw3G014440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	264, 396
AccB1I	GGYRCC	1 cut(s)	170
AccI	GTMKAC	1 cut(s)	396
AccII	CGCG	4 cut(s)	411, 420, 463, 506
AciI	CCGC	7 cut(s)	120, 310, 409, 458, 504, 539, 591
AclWI	GGATC	3 cut(s)	455, 466, 623
AcoI	YGGCCR	2 cut(s)	219, 316
AcsI	RAATTY	2 cut(s)	36, 778
AcuI	CTGAAG	1 cut(s)	222
AcyI	GRCGYC	3 cut(s)	171, 261, 393
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	3 cut(s)	32, 482, 573
AgsI	TTSAA	3 cut(s)	337, 501, 784
AjnI	CCWGG	2 cut(s)	216, 476
AluBI	AGCT	2 cut(s)	322, 554
AluI	AGCT	2 cut(s)	322, 554
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	310
Alw44I	GTGCAC	1 cut(s)	123
AlwI	GGATC	3 cut(s)	455, 466, 623
AoxI	GGCC	7 cut(s)	219, 232, 316, 438, 536, 604, 787
ApaLI	GTGCAC	1 cut(s)	123
ApeKI	GCWGC	2 cut(s)	489, 821
ApoI	RAATTY	2 cut(s)	36, 778
AspLEI	GCGC	3 cut(s)	173, 420, 463
AspS9I	GGNCC	3 cut(s)	233, 536, 788
AsuHPI	GGTGA	2 cut(s)	235, 676
AxyI	CCTNAGG	1 cut(s)	229
BaeGI	GKGCMC	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	170
BauI	CACGAG	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	476, 808
BccI	CCATC	1 cut(s)	875
BceAI	ACGGC	3 cut(s)	184, 331, 453
BciT130I	CCWGG	2 cut(s)	218, 478
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	3 cut(s)	84, 602, 837
BfmI	CTRYAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	174
BisI	GCNGC	5 cut(s)	459, 490, 539, 591, 822
BlsI	GCNGC	5 cut(s)	460, 491, 540, 592, 823
BmcAI	AGTACT	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	218, 478
BmgT120I	GGNCC	3 cut(s)	233, 536, 788
BmiI	GGNNCC	1 cut(s)	172
BmrFI	CCNGG	2 cut(s)	218, 478
BmsI	GCATC	4 cut(s)	387, 405, 648, 714
BpiI	GAAGAC	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	804
BpuEI	CTTGAG	1 cut(s)	883
BsaHI	GRCGYC	3 cut(s)	171, 261, 393
BsaJI	CCNNGG	6 cut(s)	216, 352, 441, 476, 477, 816
BsaXI	ACNNNNNCTCC	4 cut(s)	55, 85, 667, 697
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 482, 573
Bse118I	RCCGGY	1 cut(s)	606
Bse21I	CCTNAGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	218, 478
BseDI	CCNNGG	6 cut(s)	216, 352, 441, 476, 477, 816
BseGI	GGATG	4 cut(s)	79, 684, 729, 886
BseLI	CCNNNNNNNGG	3 cut(s)	32, 482, 573
BseMI	GCAATG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	498
BseSI	GKGCMC	1 cut(s)	127
BseXI	GCAGC	2 cut(s)	476, 808
Bsh1236I	CGCG	4 cut(s)	411, 420, 463, 506
Bsh1285I	CGRYCG	1 cut(s)	409
BshFI	GGCC	7 cut(s)	221, 234, 318, 440, 538, 606, 789
BshNI	GGYRCC	1 cut(s)	170
BsiEI	CGRYCG	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	3 cut(s)	345, 516, 607
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	3 cut(s)	32, 482, 573
BsmAI	GTCTC	1 cut(s)	310
BsmBI	CGTCTC	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	673
BsnI	GGCC	7 cut(s)	221, 234, 318, 440, 538, 606, 789
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	447, 471, 615
BspACI	CCGC	7 cut(s)	120, 310, 409, 458, 504, 539, 591
BspANI	GGCC	7 cut(s)	221, 234, 318, 440, 538, 606, 789
BspFNI	CGCG	4 cut(s)	411, 420, 463, 506
BspLI	GGNNCC	1 cut(s)	172
BspPI	GGATC	3 cut(s)	455, 466, 623
BspT107I	GGYRCC	1 cut(s)	170
BsrDI	GCAATG	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	606
BssAI	RCCGGY	1 cut(s)	606
BssECI	CCNNGG	6 cut(s)	216, 352, 441, 476, 477, 816
BssMI	GATC	3 cut(s)	447, 471, 615
BssNI	GRCGYC	3 cut(s)	171, 261, 393
BssSI	CACGAG	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	441
Bst2BI	CACGAG	1 cut(s)	126
Bst2UI	CCWGG	2 cut(s)	218, 478
Bst4CI	ACNGT	3 cut(s)	62, 304, 629
Bst6I	CTCTTC	2 cut(s)	690, 699
BstACI	GRCGYC	3 cut(s)	171, 261, 393
BstC8I	GCNNGC	7 cut(s)	6, 320, 456, 508, 543, 564, 774
BstDEI	CTNAG	2 cut(s)	229, 804
BstF5I	GGATG	4 cut(s)	79, 684, 729, 886
BstFNI	CGCG	4 cut(s)	411, 420, 463, 506
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	3 cut(s)	173, 420, 463
BstKTI	GATC	3 cut(s)	450, 474, 618
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	3 cut(s)	447, 471, 615
BstMCI	CGRYCG	1 cut(s)	409
BstMWI	GCNNNNNNNGC	8 cut(s)	264, 417, 460, 512, 521, 551, 733, 821
BstNI	CCWGG	2 cut(s)	218, 478
BstNSI	RCATGY	3 cut(s)	458, 545, 566
BstSCI	CCNGG	2 cut(s)	216, 476
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	127
BstUI	CGCG	4 cut(s)	411, 420, 463, 506
BstV1I	GCAGC	2 cut(s)	476, 808
BstV2I	GAAGAC	1 cut(s)	282
Bsu36I	CCTNAGG	1 cut(s)	229
BsuRI	GGCC	7 cut(s)	221, 234, 318, 440, 538, 606, 789
BtsCI	GGATG	4 cut(s)	79, 684, 729, 886
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	7 cut(s)	6, 320, 456, 508, 543, 564, 774
CfoI	GCGC	3 cut(s)	173, 420, 463
Cfr10I	RCCGGY	1 cut(s)	606
Cfr13I	GGNCC	3 cut(s)	233, 536, 788
CseI	GACGC	1 cut(s)	499
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	6 cut(s)	32, 41, 455, 542, 563, 751
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	2 cut(s)	229, 804
DinI	GGCGCC	1 cut(s)	172
DpnI	GATC	3 cut(s)	449, 473, 617
DpnII	GATC	3 cut(s)	447, 471, 615
EaeI	YGGCCR	2 cut(s)	219, 316
Eam1104I	CTCTTC	2 cut(s)	690, 699
EarI	CTCTTC	2 cut(s)	690, 699
Eco130I	CCWWGG	1 cut(s)	441
Eco57I	CTGAAG	1 cut(s)	222
Eco81I	CCTNAGG	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRI	GAATTC	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	216, 476
EcoT14I	CCWWGG	1 cut(s)	441
EgeI	GGCGCC	1 cut(s)	172
EheI	GGCGCC	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	441
Esp3I	CGTCTC	1 cut(s)	310
FaeI	CATG	6 cut(s)	35, 44, 458, 545, 566, 754
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	6 cut(s)	31, 40, 454, 541, 562, 750
FauI	CCCGC	1 cut(s)	317
FblI	GTMKAC	1 cut(s)	396
Fnu4HI	GCNGC	5 cut(s)	459, 490, 539, 591, 822
FokI	GGATG	4 cut(s)	66, 691, 736, 893
Fsp4HI	GCNGC	5 cut(s)	459, 490, 539, 591, 822
FspBI	CTAG	3 cut(s)	84, 602, 837
GlaI	GCGC	3 cut(s)	172, 419, 462
GluI	GCNGC	5 cut(s)	459, 490, 539, 591, 822
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	7 cut(s)	221, 234, 318, 440, 538, 606, 789
HapII	CCGG	3 cut(s)	345, 516, 607
HgaI	GACGC	1 cut(s)	499
HhaI	GCGC	3 cut(s)	173, 420, 463
Hin1I	GRCGYC	3 cut(s)	171, 261, 393
Hin1II	CATG	6 cut(s)	35, 44, 458, 545, 566, 754
Hin6I	GCGC	3 cut(s)	171, 418, 461
HinP1I	GCGC	3 cut(s)	171, 418, 461
HincII	GTYRAC	2 cut(s)	385, 397
HindII	GTYRAC	2 cut(s)	385, 397
HinfI	GANTC	5 cut(s)	200, 296, 348, 519, 845
HpaII	CCGG	3 cut(s)	345, 516, 607
HphI	GGTGA	2 cut(s)	235, 676
Hpy166II	GTNNAC	8 cut(s)	125, 253, 300, 385, 397, 424, 599, 625
Hpy188I	TCNGA	1 cut(s)	620
Hpy188III	TCNNGA	2 cut(s)	763, 900
Hpy8I	GTNNAC	8 cut(s)	125, 253, 300, 385, 397, 424, 599, 625
Hpy99I	CGWCG	5 cut(s)	263, 395, 398, 401, 515
HpyAV	CCTTC	6 cut(s)	38, 45, 81, 84, 246, 256
HpyCH4III	ACNGT	3 cut(s)	62, 304, 629
HpyCH4IV	ACGT	3 cut(s)	261, 393, 426
HpyCH4V	TGCA	2 cut(s)	125, 492
HpyF10VI	GCNNNNNNNGC	8 cut(s)	264, 417, 460, 512, 521, 551, 733, 821
HpyF3I	CTNAG	2 cut(s)	229, 804
HpySE526I	ACGT	3 cut(s)	261, 393, 426
Hsp92I	GRCGYC	3 cut(s)	171, 261, 393
Hsp92II	CATG	6 cut(s)	35, 44, 458, 545, 566, 754
HspAI	GCGC	3 cut(s)	171, 418, 461
KasI	GGCGCC	1 cut(s)	170
Kzo9I	GATC	3 cut(s)	447, 471, 615
Lsp1109I	GCAGC	2 cut(s)	476, 808
LweI	GCATC	4 cut(s)	387, 405, 648, 714
MaeI	CTAG	3 cut(s)	84, 602, 837
MaeII	ACGT	3 cut(s)	261, 393, 426
MaeIII	GTNAC	3 cut(s)	112, 241, 683
MalI	GATC	3 cut(s)	449, 473, 617
MboI	GATC	3 cut(s)	447, 471, 615
MboII	GAAGA	7 cut(s)	284, 287, 595, 707, 713, 716, 767
MhlI	GDGCHC	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	221
MluCI	AATT	5 cut(s)	36, 223, 778, 888, 904
MluNI	TGGCCA	1 cut(s)	221
Mly113I	GGCGCC	1 cut(s)	171
MlyI	GAGTC	4 cut(s)	194, 305, 528, 854
MmeI	TCCRAC	1 cut(s)	72
Mox20I	TGGCCA	1 cut(s)	221
MscI	TGGCCA	1 cut(s)	221
MseI	TTAA	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	656
Msp20I	TGGCCA	1 cut(s)	221
MspI	CCGG	3 cut(s)	345, 516, 607
MspR9I	CCNGG	2 cut(s)	218, 478
Mva1269I	GAATGC	1 cut(s)	673
MvaI	CCWGG	2 cut(s)	218, 478
MvnI	CGCG	4 cut(s)	411, 420, 463, 506
MwoI	GCNNNNNNNGC	8 cut(s)	264, 417, 460, 512, 521, 551, 733, 821
NarI	GGCGCC	1 cut(s)	171
NdeII	GATC	3 cut(s)	447, 471, 615
NlaIII	CATG	6 cut(s)	35, 44, 458, 545, 566, 754
NlaIV	GGNNCC	1 cut(s)	172
NmeAIII	GCCGAG	2 cut(s)	333, 841
NmuCI	GTSAC	2 cut(s)	241, 683
NspI	RCATGY	3 cut(s)	458, 545, 566
PaeI	GCATGC	3 cut(s)	458, 545, 566
PasI	CCCWGGG	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	7 cut(s)	255, 267, 300, 321, 387, 396, 402
PctI	GAATGC	1 cut(s)	673
PfeI	GAWTC	1 cut(s)	348
PkrI	GCNGC	5 cut(s)	460, 491, 540, 592, 823
PleI	GAGTC	4 cut(s)	194, 304, 527, 853
PluTI	GGCGCC	1 cut(s)	174
PpsI	GAGTC	4 cut(s)	194, 304, 527, 853
Psp6I	CCWGG	2 cut(s)	216, 476
PspGI	CCWGG	2 cut(s)	216, 476
PspN4I	GGNNCC	1 cut(s)	172
PspPI	GGNCC	3 cut(s)	233, 536, 788
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	656
SalI	GTCGAC	1 cut(s)	395
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	5 cut(s)	459, 490, 539, 591, 822
Sau3AI	GATC	3 cut(s)	447, 471, 615
Sau96I	GGNCC	3 cut(s)	233, 536, 788
ScaI	AGTACT	1 cut(s)	64
SchI	GAGTC	4 cut(s)	194, 305, 528, 854
ScrFI	CCNGG	2 cut(s)	218, 478
SduI	GDGCHC	1 cut(s)	127
SfaNI	GCATC	4 cut(s)	387, 405, 648, 714
SfcI	CTRYAG	1 cut(s)	108
SfoI	GGCGCC	1 cut(s)	172
SgrDI	CGTCGACG	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	1 cut(s)	898
SmoI	CTYRAG	1 cut(s)	898
SphI	GCATGC	3 cut(s)	458, 545, 566
Sse9I	AATT	5 cut(s)	36, 223, 778, 888, 904
SsiI	CCGC	7 cut(s)	120, 310, 409, 458, 504, 539, 591
SspDI	GGCGCC	1 cut(s)	170
SspMI	CTAG	3 cut(s)	84, 602, 837
StyD4I	CCNGG	2 cut(s)	216, 476
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	3 cut(s)	62, 304, 629
TaiI	ACGT	3 cut(s)	264, 396, 429
TaqI	TCGA	7 cut(s)	270, 282, 294, 324, 390, 396, 405
TasI	AATT	5 cut(s)	36, 223, 778, 888, 904
TatI	WGTACW	1 cut(s)	62
TauI	GCSGC	3 cut(s)	461, 541, 593
TfiI	GAWTC	1 cut(s)	348
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	260
TseFI	GTSAC	2 cut(s)	241, 683
TseI	GCWGC	2 cut(s)	489, 821
Tsp45I	GTSAC	2 cut(s)	241, 683
TspDTI	ATGAA	2 cut(s)	20, 29
TspRI	CASTG	1 cut(s)	260
VneI	GTGCAC	1 cut(s)	123
XapI	RAATTY	2 cut(s)	36, 778
XceI	RCATGY	3 cut(s)	458, 545, 566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	658
XmiI	GTMKAC	1 cut(s)	396
XspI	CTAG	3 cut(s)	84, 602, 837
ZraI	GACGTC	2 cut(s)	262, 394
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.