Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002522

Physical Location & Seq

Genomic Coordinates Reverse (-)

41374036 .. 41377971

Gene Structure 3936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG277600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1893 bp

ATGGCGTGCCTGAAGCTGGGATCGAAATCTGAGGTCTTTCATCTTGATGGCCAAACTTGGCTTTGCTCAACTGGACTTTCAAGTGATGTCATTGTTGAAGTTGAGGAGACGTCCTTCCATCTCCACAAGTTTCCATTGCTATCAAGAAGTGGATTATTAGAAGACATTATTGCAGAATTTCCTAGTGAGGATGAGTACAAATGTAGTTTGCAACTGCATGACATTCCTGGTGGAGCCAAAGCCTTCTTGCTTGTTGCCAAATTCTGTTATGGTGTAAGATTTGAACTCAATGCCCTGAATGTAGTTATTGTGAGGTGTGCAGCTGAGTATCTTCGCATGAATGAAGACTATGGAGAAGGAAATCTCATCAGGCAAGCAGAGGATTTTCTAAATGATATACTTGGCAATTGGACTGACTCAATTAAAGTACTTGAAACCTGCGAAGAAGTCTTGCCTCATGCAGAAGAGCTTCATATTGTTTCAAGATGCATCAATTCATTGGCAATGACAGCTAGTGCTGATCCGAGTTTATTCAGTTGGCCTCTGTCGGGTAAAGGTGCAGTGAAGAGCCCAGAAGGCGTGGCATTCTGGAATGGAATAAGCACGACTGCCAAACCACATCCAGTTAATGAAGATTGGTGGTTTGAGGAAGTCTCCTTCCTGAAATTGCCTTTTTATAAAAGGCTGATTCGGGCTGTTGAATCAGGTGGTATGAATCTAGAGAAGGTTGCTGGTTCAATTATGCACTATGCAAAGAGGCATCTTTCCTTGTTGGGCAGGCAATCTAGTTTCCTAAATGGAAACCGTGCTGCCCCAGCATCAACTGTTTCTGCCCCATCTGATGTAGATCAAAGGAATCTTCTTGAGGAGATAGTGGAATTACTACCTGATCAGAAGGGCGTTACACCAACCAACTTCCTGCTTAGGCTTCTGCGGACATCTATGATTTTGCATGCTAGCCCATCATGTCGAGAGAATTTGGAAAAGCGAGTTGGGGCCCAGTTGGAACAAGCAGCTCTTGAAGATCTCTTGATACCAAACATGGGTTACACAGTCGAGACCCTCTATGATATTGATTGTGTTCAGCGGATTCTTGATCACTTCATGCTAATGGATCGCGATTCAATTGATTATTCTTCTAACTGTATAGTTGATGAAGGCCAGTTGAGTGATGGGTCTCATGCACTGACTCGAATGACCATGGTGGCTCATCTTGTGGATGGCTATCTTGCTGAGGTGGCACCTGATGTTAACTTGAAGTTACAGAAGTTTCAGTCACTAGCTGCTCTTATCCCTGAATATGCAAGACCATTAGACGATGGACTTTACCGTGCTATTGACATATACCTCAAGGCCCATCCCTGGCTAACAGACTCTGAGAAGGAGCAAATATGCAGGCTCATGAACTGCCAGAAGCTCTCATTGGAAGCGAGCACACATGCAGCCCAGAATGAGAGGTTACCACTCCGCGTCATTGTCCAAGTTCTATTCTTTGAACAGCTTCGGCTACGGACTTCAGTTGCCGGTTGGTTCTTTGTATCTGACAACCTTGAGAACTCACAGAATCTGAGTGGGAATCTCGCGCTTGTTAGAAATGAAGCACCTGGTCAAGCTGGCACCAGACGACTGGATCGTGTTGTAGCAGTCGATGACATGAAGGAGCGGGTTTCTGAGCTTGAGAAGGAATGCTTGAGCATGAAACAAGAGATTGAGAAGCTGGTGAAGACAAAAGGGAGTTGGAATTCCTTGTTGAAAAAGTTTGGTTTGAGGCTCAAGTCAAAGCCTGATGCTAAGAAACCATCCAAGCCTAGCTGCAATGGCTCCGAAGAATTACCAACATCAATAGGGCCACTTATGGATGGAAAAGAAATTAATAAAGAATTAAGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

630

Amino Acids

70.53

Weight (kDa)

5.39

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	26 - 115	3.6e-06	BTB/POZ domain
NPH3	PF03000	212 - 478	1.6e-97	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03250 AT5G03250
fragaria_vesca	FvH4_6g16010 FvH4_7g19310 FvH4_7g19310 FvH4_7g19310
malus_domestica	MD01G1107700.v1.1 MD04G1096800.v1.1 MD07G1173300.v1.1
prunus_persica	Prupe.2G212500_v2.0.a1 Prupe.6G236100_v2.0.a1
pyrus_communis	pycom01g13460 pycom04g09190 pycom07g16800 pycom12g11690
rosa_chinensis	RchiOBHm_Chr1g0363191 RchiOBHm_Chr3g0469731
rosa_laevigata	RLG00000024326 RLG00000027585
rosa_multiflora	Rmu_sc0002925.1_g000004 Rmu_sc0010644.1_g000001 Rmu_sc0022819.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293390 Rroxscaffold_6G00411520
rosa_rugosa	Rorug01G0305300 Rorug03G0103400 Rorug03G0103500 Rorug03G0103600 Rorug03G0103700 Rorug03G0103800 Rorug03G0103800
rosa_samantha	Rh1AG314100 Rh1BG277600 Rh1CG294000 Rh1DG308300 Rh3AG153200 Rh3BG177200 Rh3CG168100 Rh3DG198400
rosa_wichuraiana	Rw1G027830 Rw3G014440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	678
AatII	GACGTC	1 cut(s)	113
Acc36I	ACCTGC	1 cut(s)	446
AccB1I	GGYRCC	2 cut(s)	1240, 1616
AccBSI	CCGCTC	1 cut(s)	1663
AccII	CGCG	3 cut(s)	1119, 1470, 1583
AciI	CCGC	4 cut(s)	934, 1087, 1468, 1663
AclWI	GGATC	4 cut(s)	28, 515, 1122, 1638
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	4 cut(s)	176, 260, 976, 1741
AcuI	CTGAAG	2 cut(s)	32, 1500
AcyI	GRCGYC	1 cut(s)	110
AfaI	GTAC	2 cut(s)	197, 429
AfiI	CCNNNNNNNGG	4 cut(s)	16, 548, 1043, 1362
AjnI	CCWGG	3 cut(s)	226, 1361, 1603
AjuI	GAANNNNNNNTTGG	4 cut(s)	975, 1007, 1406, 1438
Alw21I	GWGCWC	1 cut(s)	1436
Alw26I	GTCTC	4 cut(s)	101, 658, 1052, 1182
AlwI	GGATC	4 cut(s)	28, 515, 1122, 1638
AlwNI	CAGNNNCTG	2 cut(s)	1376, 1567
AoxI	GGCC	6 cut(s)	49, 539, 996, 1159, 1353, 1847
ApaI	GGGCCC	1 cut(s)	1000
ApeKI	GCWGC	6 cut(s)	320, 809, 1013, 1283, 1442, 1812
ApoI	RAATTY	4 cut(s)	176, 260, 976, 1741
AseI	ATTAAT	1 cut(s)	1872
Asp700I	GAANNNNTTC	2 cut(s)	468, 1500
AspLEI	GCGC	1 cut(s)	1585
AspS9I	GGNCC	4 cut(s)	996, 997, 1354, 1847
AsuHPI	GGTGA	1 cut(s)	1732
AsuNHI	GCTAGC	1 cut(s)	956
BaeGI	GKGCMC	1 cut(s)	1000
BalI	TGGCCA	1 cut(s)	51
BanI	GGYRCC	2 cut(s)	1240, 1616
BanII	GRGCYC	2 cut(s)	572, 1000
BbsI	GAAGAC	3 cut(s)	168, 351, 1730
Bbv12I	GWGCWC	1 cut(s)	1436
BbvCI	CCTCAGC	1 cut(s)	1233
BbvI	GCAGC	6 cut(s)	332, 796, 1025, 1270, 1454, 1799
BciT130I	CCWGG	3 cut(s)	228, 1363, 1605
BclI	TGATCA	2 cut(s)	889, 1096
BcoDI	GTCTC	4 cut(s)	101, 658, 1052, 1182
BfaI	CTAG	7 cut(s)	183, 513, 719, 786, 957, 1280, 1809
BfuAI	ACCTGC	1 cut(s)	446
BglI	GCCNNNNNGGC	1 cut(s)	576
BglII	AGATCT	1 cut(s)	1024
BisI	GCNGC	6 cut(s)	321, 810, 1014, 1284, 1443, 1813
BlsI	GCNGC	6 cut(s)	322, 811, 1015, 1285, 1444, 1814
BmcAI	AGTACT	1 cut(s)	429
Bme1390I	CCNGG	3 cut(s)	228, 1363, 1605
BmgT120I	GGNCC	4 cut(s)	996, 997, 1354, 1847
BmiI	GGNNCC	6 cut(s)	235, 997, 998, 1242, 1618, 1822
BmrFI	CCNGG	3 cut(s)	228, 1363, 1605
BmrI	ACTGGG	1 cut(s)	994
BmsI	GCATC	5 cut(s)	476, 498, 769, 827, 1777
BmtI	GCTAGC	1 cut(s)	960
BmuI	ACTGGG	1 cut(s)	994
BpiI	GAAGAC	3 cut(s)	168, 351, 1730
BplI	GAGNNNNNCTC	2 cut(s)	638, 670
Bpu10I	CCTNAGC	2 cut(s)	923, 1233
BpuEI	CTTGAG	6 cut(s)	884, 1334, 1571, 1697, 1711, 1757
BsaBI	GATNNNNATC	3 cut(s)	25, 846, 1224
BsaHI	GRCGYC	1 cut(s)	110
BsaI	GGTCTC	2 cut(s)	1052, 1182
BsaJI	CCNNGG	2 cut(s)	1200, 1361
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 548, 1043, 1362
Bse118I	RCCGGY	1 cut(s)	1523
Bse1I	ACTGG	5 cut(s)	76, 623, 1000, 1162, 1632
Bse3DI	GCAATG	3 cut(s)	134, 510, 1822
Bse8I	GATNNNNATC	3 cut(s)	25, 846, 1224
BseBI	CCWGG	3 cut(s)	228, 1363, 1605
BseDI	CCNNGG	2 cut(s)	1200, 1361
BseGI	GGATG	6 cut(s)	196, 619, 1225, 1357, 1799, 1864
BseJI	GATNNNNATC	3 cut(s)	25, 846, 1224
BseLI	CCNNNNNNNGG	4 cut(s)	16, 548, 1043, 1362
BseMI	GCAATG	3 cut(s)	134, 510, 1822
BseMII	CTCAG	6 cut(s)	21, 315, 1224, 1368, 1559, 1662
BseNI	ACTGG	5 cut(s)	76, 623, 1000, 1162, 1632
BseRI	GAGGAG	2 cut(s)	119, 881
BseSI	GKGCMC	1 cut(s)	1000
BseXI	GCAGC	6 cut(s)	332, 796, 1025, 1270, 1454, 1799
BseYI	CCCAGC	2 cut(s)	16, 814
BsgI	GTGCAG	2 cut(s)	339, 579
Bsh1236I	CGCG	3 cut(s)	1119, 1470, 1583
BshFI	GGCC	6 cut(s)	51, 541, 998, 1161, 1355, 1849
BshNI	GGYRCC	2 cut(s)	1240, 1616
BsiHKAI	GWGCWC	1 cut(s)	1436
BsiSI	CCGG	1 cut(s)	1524
BslI	CCNNNNNNNGG	4 cut(s)	16, 548, 1043, 1362
BsmAI	GTCTC	4 cut(s)	101, 658, 1052, 1182
BsmBI	CGTCTC	1 cut(s)	101
BsmI	GAATGC	2 cut(s)	584, 1691
BsnI	GGCC	6 cut(s)	51, 541, 998, 1161, 1355, 1849
Bso31I	GGTCTC	2 cut(s)	1052, 1182
Bsp120I	GGGCCC	1 cut(s)	996
Bsp1286I	GDGCHC	3 cut(s)	572, 1000, 1436
Bsp143I	GATC	8 cut(s)	20, 520, 847, 889, 1024, 1096, 1114, 1630
Bsp19I	CCATGG	1 cut(s)	1200
Bsp68I	TCGCGA	1 cut(s)	1119
BspACI	CCGC	4 cut(s)	934, 1087, 1468, 1663
BspANI	GGCC	6 cut(s)	51, 541, 998, 1161, 1355, 1849
BspCNI	CTCAG	6 cut(s)	22, 316, 1225, 1369, 1560, 1663
BspFNI	CGCG	3 cut(s)	1119, 1470, 1583
BspHI	TCATGA	1 cut(s)	1401
BspLI	GGNNCC	6 cut(s)	235, 997, 998, 1242, 1618, 1822
BspMI	ACCTGC	1 cut(s)	446
BspOI	GCTAGC	1 cut(s)	960
BspPI	GGATC	4 cut(s)	28, 515, 1122, 1638
BspQI	GCTCTTC	2 cut(s)	459, 560
BspT107I	GGYRCC	2 cut(s)	1240, 1616
BspTNI	GGTCTC	2 cut(s)	1052, 1182
BsrBI	CCGCTC	1 cut(s)	1663
BsrDI	GCAATG	3 cut(s)	134, 510, 1822
BsrFI	RCCGGY	1 cut(s)	1523
BsrI	ACTGG	5 cut(s)	76, 623, 1000, 1162, 1632
BssAI	RCCGGY	1 cut(s)	1523
BssECI	CCNNGG	2 cut(s)	1200, 1361
BssMI	GATC	8 cut(s)	20, 520, 847, 889, 1024, 1096, 1114, 1630
BssNI	GRCGYC	1 cut(s)	110
BssT1I	CCWWGG	1 cut(s)	1200
Bst2UI	CCWGG	3 cut(s)	228, 1363, 1605
Bst4CI	ACNGT	5 cut(s)	806, 826, 1054, 1145, 1331
Bst6I	CTCTTC	2 cut(s)	459, 560
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	8 cut(s)	7, 375, 779, 954, 958, 1397, 1432, 1615
BstDEI	CTNAG	8 cut(s)	30, 324, 923, 1233, 1377, 1568, 1671, 1791
BstDSI	CCRYGG	1 cut(s)	1200
BstEII	GGTNACC	1 cut(s)	1458
BstF5I	GGATG	6 cut(s)	196, 619, 1225, 1357, 1799, 1864
BstFNI	CGCG	3 cut(s)	1119, 1470, 1583
BstHHI	GCGC	1 cut(s)	1585
BstKTI	GATC	8 cut(s)	23, 523, 850, 892, 1027, 1099, 1117, 1633
BstMAI	GTCTC	4 cut(s)	101, 658, 1052, 1182
BstMBI	GATC	8 cut(s)	20, 520, 847, 889, 1024, 1096, 1114, 1630
BstMWI	GCNNNNNNNGC	5 cut(s)	509, 576, 815, 1238, 1818
BstNI	CCWGG	3 cut(s)	228, 1363, 1605
BstNSI	RCATGY	2 cut(s)	956, 1442
BstPI	GGTNACC	1 cut(s)	1458
BstSCI	CCNGG	3 cut(s)	226, 1361, 1603
BstSLI	GKGCMC	1 cut(s)	1000
BstUI	CGCG	3 cut(s)	1119, 1470, 1583
BstV1I	GCAGC	6 cut(s)	332, 796, 1025, 1270, 1454, 1799
BstV2I	GAAGAC	3 cut(s)	168, 351, 1730
BstX2I	RGATCY	1 cut(s)	1024
BstXI	CCANNNNNNTGG	1 cut(s)	1627
BstYI	RGATCY	1 cut(s)	1024
BsuRI	GGCC	6 cut(s)	51, 541, 998, 1161, 1355, 1849
BtgI	CCRYGG	1 cut(s)	1200
BtsCI	GGATG	6 cut(s)	196, 619, 1225, 1357, 1799, 1864
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	2 cut(s)	567, 1184
BtuMI	TCGCGA	1 cut(s)	1119
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	8 cut(s)	7, 375, 779, 954, 958, 1397, 1432, 1615
CaiI	CAGNNNCTG	2 cut(s)	1376, 1567
CciI	TCATGA	1 cut(s)	1401
CfoI	GCGC	1 cut(s)	1585
Cfr10I	RCCGGY	1 cut(s)	1523
Cfr13I	GGNCC	4 cut(s)	996, 997, 1354, 1847
CseI	GACGC	1 cut(s)	1459
CsiI	ACCWGGT	1 cut(s)	1603
Csp6I	GTAC	2 cut(s)	196, 428
CviQI	GTAC	2 cut(s)	196, 428
DdeI	CTNAG	8 cut(s)	30, 324, 923, 1233, 1377, 1568, 1671, 1791
DpnI	GATC	8 cut(s)	22, 522, 849, 891, 1026, 1098, 1116, 1632
DpnII	GATC	8 cut(s)	20, 520, 847, 889, 1024, 1096, 1114, 1630
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	459, 560
EarI	CTCTTC	2 cut(s)	459, 560
Eco130I	CCWWGG	1 cut(s)	1200
Eco24I	GRGCYC	2 cut(s)	572, 1000
Eco31I	GGTCTC	2 cut(s)	1052, 1182
Eco57I	CTGAAG	2 cut(s)	32, 1500
Eco91I	GGTNACC	1 cut(s)	1458
EcoO109I	RGGNCCY	1 cut(s)	996
EcoO65I	GGTNACC	1 cut(s)	1458
EcoRI	GAATTC	1 cut(s)	1741
EcoRII	CCWGG	3 cut(s)	226, 1361, 1603
EcoT14I	CCWWGG	1 cut(s)	1200
EcoT22I	ATGCAT	1 cut(s)	491
EcoT38I	GRGCYC	2 cut(s)	572, 1000
ErhI	CCWWGG	1 cut(s)	1200
Esp3I	CGTCTC	1 cut(s)	101
FalI	AAGNNNNNCTT	4 cut(s)	1002, 1034, 1673, 1705
FauI	CCCGC	1 cut(s)	1656
FbaI	TGATCA	2 cut(s)	889, 1096
Fnu4HI	GCNGC	6 cut(s)	321, 810, 1014, 1284, 1443, 1813
FokI	GGATG	6 cut(s)	203, 606, 1232, 1344, 1786, 1871
FriOI	GRGCYC	2 cut(s)	572, 1000
Fsp4HI	GCNGC	6 cut(s)	321, 810, 1014, 1284, 1443, 1813
FspBI	CTAG	7 cut(s)	183, 513, 719, 786, 957, 1280, 1809
GlaI	GCGC	1 cut(s)	1584
GluI	GCNGC	6 cut(s)	321, 810, 1014, 1284, 1443, 1813
GsaI	CCCAGC	2 cut(s)	20, 818
HaeIII	GGCC	6 cut(s)	51, 541, 998, 1161, 1355, 1849
HapII	CCGG	1 cut(s)	1524
HgaI	GACGC	1 cut(s)	1459
HhaI	GCGC	1 cut(s)	1585
Hin1I	GRCGYC	1 cut(s)	110
Hin6I	GCGC	1 cut(s)	1583
HinP1I	GCGC	1 cut(s)	1583
HincII	GTYRAC	1 cut(s)	1252
HindII	GTYRAC	1 cut(s)	1252
HpaI	GTTAAC	1 cut(s)	1252
HpaII	CCGG	1 cut(s)	1524
HphI	GGTGA	1 cut(s)	1732
Hpy166II	GTNNAC	1 cut(s)	1252
Hpy188I	TCNGA	9 cut(s)	31, 525, 841, 894, 1378, 1543, 1569, 1672, 1825
Hpy8I	GTNNAC	1 cut(s)	1252
HpyCH4III	ACNGT	5 cut(s)	806, 826, 1054, 1145, 1331
HpyCH4IV	ACGT	1 cut(s)	110
HpyF10VI	GCNNNNNNNGC	5 cut(s)	509, 576, 815, 1238, 1818
HpyF3I	CTNAG	8 cut(s)	30, 324, 923, 1233, 1377, 1568, 1671, 1791
HpySE526I	ACGT	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	110
HspAI	GCGC	1 cut(s)	1583
Ksp22I	TGATCA	2 cut(s)	889, 1096
KspAI	GTTAAC	1 cut(s)	1252
Kzo9I	GATC	8 cut(s)	20, 520, 847, 889, 1024, 1096, 1114, 1630
LguI	GCTCTTC	2 cut(s)	459, 560
LmnI	GCTCC	4 cut(s)	233, 1384, 1660, 1826
Lsp1109I	GCAGC	6 cut(s)	332, 796, 1025, 1270, 1454, 1799
LweI	GCATC	5 cut(s)	476, 498, 769, 827, 1777
MabI	ACCWGGT	1 cut(s)	1603
MaeI	CTAG	7 cut(s)	183, 513, 719, 786, 957, 1280, 1809
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	5 cut(s)	901, 1046, 1260, 1275, 1458
MalI	GATC	8 cut(s)	22, 522, 849, 891, 1026, 1098, 1116, 1632
MbiI	CCGCTC	1 cut(s)	1663
MboI	GATC	8 cut(s)	20, 520, 847, 889, 1024, 1096, 1114, 1630
MfeI	CAATTG	2 cut(s)	406, 1125
MflI	RGATCY	1 cut(s)	1024
MhlI	GDGCHC	3 cut(s)	572, 1000, 1436
MlsI	TGGCCA	1 cut(s)	51
MluNI	TGGCCA	1 cut(s)	51
MlyI	GAGTC	3 cut(s)	410, 1183, 1367
MmeI	TCCRAC	2 cut(s)	984, 1718
Mox20I	TGGCCA	1 cut(s)	51
Mph1103I	ATGCAT	1 cut(s)	491
MroXI	GAANNNNTTC	2 cut(s)	468, 1500
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	5 cut(s)	423, 627, 1251, 1872, 1883
MslI	CAYNNNNRTG	2 cut(s)	45, 1109
Msp20I	TGGCCA	1 cut(s)	51
MspA1I	CMGCKG	2 cut(s)	323, 1087
MspI	CCGG	1 cut(s)	1524
MspR9I	CCNGG	3 cut(s)	228, 1363, 1605
MunI	CAATTG	2 cut(s)	406, 1125
Mva1269I	GAATGC	2 cut(s)	584, 1691
MvaI	CCWGG	3 cut(s)	228, 1363, 1605
MvnI	CGCG	3 cut(s)	1119, 1470, 1583
MwoI	GCNNNNNNNGC	5 cut(s)	509, 576, 815, 1238, 1818
NcoI	CCATGG	1 cut(s)	1200
NdeII	GATC	8 cut(s)	20, 520, 847, 889, 1024, 1096, 1114, 1630
NheI	GCTAGC	1 cut(s)	956
NlaIV	GGNNCC	6 cut(s)	235, 997, 998, 1242, 1618, 1822
NmuCI	GTSAC	1 cut(s)	1275
NruI	TCGCGA	1 cut(s)	1119
NsiI	ATGCAT	1 cut(s)	491
NspI	RCATGY	2 cut(s)	956, 1442
PaeI	GCATGC	1 cut(s)	956
PagI	TCATGA	1 cut(s)	1401
PciSI	GCTCTTC	2 cut(s)	459, 560
PcsI	WCGNNNNNNNCGW	1 cut(s)	1630
PctI	GAATGC	2 cut(s)	584, 1691
PdmI	GAANNNNTTC	2 cut(s)	468, 1500
PfeI	GAWTC	8 cut(s)	688, 701, 715, 856, 1090, 1121, 1564, 1576
PkrI	GCNGC	6 cut(s)	322, 811, 1015, 1285, 1444, 1814
PleI	GAGTC	3 cut(s)	410, 1183, 1367
PpsI	GAGTC	3 cut(s)	410, 1183, 1367
PshBI	ATTAAT	1 cut(s)	1872
PsiI	TTATAA	1 cut(s)	678
Psp6I	CCWGG	3 cut(s)	226, 1361, 1603
PspEI	GGTNACC	1 cut(s)	1458
PspFI	CCCAGC	2 cut(s)	16, 814
PspGI	CCWGG	3 cut(s)	226, 1361, 1603
PspN4I	GGNNCC	6 cut(s)	235, 997, 998, 1242, 1618, 1822
PspOMI	GGGCCC	1 cut(s)	996
PspPI	GGNCC	4 cut(s)	996, 997, 1354, 1847
PstNI	CAGNNNCTG	2 cut(s)	1376, 1567
PsuI	RGATCY	1 cut(s)	1024
PvuII	CAGCTG	1 cut(s)	323
RruI	TCGCGA	1 cut(s)	1119
RsaI	GTAC	2 cut(s)	197, 429
RsaNI	GTAC	2 cut(s)	196, 428
RseI	CAYNNNNRTG	2 cut(s)	45, 1109
SapI	GCTCTTC	2 cut(s)	459, 560
SaqAI	TTAA	5 cut(s)	423, 627, 1251, 1872, 1883
SatI	GCNGC	6 cut(s)	321, 810, 1014, 1284, 1443, 1813
Sau3AI	GATC	8 cut(s)	20, 520, 847, 889, 1024, 1096, 1114, 1630
Sau96I	GGNCC	4 cut(s)	996, 997, 1354, 1847
ScaI	AGTACT	1 cut(s)	429
SchI	GAGTC	3 cut(s)	410, 1183, 1367
ScrFI	CCNGG	3 cut(s)	228, 1363, 1605
SduI	GDGCHC	3 cut(s)	572, 1000, 1436
SexAI	ACCWGGT	1 cut(s)	1603
SfaNI	GCATC	5 cut(s)	476, 498, 769, 827, 1777
SmiMI	CAYNNNNRTG	2 cut(s)	45, 1109
SmlI	CTYRAG	6 cut(s)	863, 1349, 1550, 1676, 1690, 1772
SmoI	CTYRAG	6 cut(s)	863, 1349, 1550, 1676, 1690, 1772
SphI	GCATGC	1 cut(s)	956
SsiI	CCGC	4 cut(s)	934, 1087, 1468, 1663
SspMI	CTAG	7 cut(s)	183, 513, 719, 786, 957, 1280, 1809
StyD4I	CCNGG	3 cut(s)	226, 1361, 1603
StyI	CCWWGG	1 cut(s)	1200
TaaI	ACNGT	5 cut(s)	806, 826, 1054, 1145, 1331
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	5 cut(s)	23, 970, 1056, 1192, 1647
TatI	WGTACW	2 cut(s)	195, 427
TfiI	GAWTC	8 cut(s)	688, 701, 715, 856, 1090, 1121, 1564, 1576
Tru1I	TTAA	5 cut(s)	423, 627, 1251, 1872, 1883
Tru9I	TTAA	5 cut(s)	423, 627, 1251, 1872, 1883
TscAI	CASTG	2 cut(s)	567, 1191
TseFI	GTSAC	1 cut(s)	1275
TseI	GCWGC	6 cut(s)	320, 809, 1013, 1283, 1442, 1812
Tsp45I	GTSAC	1 cut(s)	1275
TspGWI	ACGGA	1 cut(s)	1525
TspRI	CASTG	2 cut(s)	567, 1191
VspI	ATTAAT	1 cut(s)	1872
XapI	RAATTY	4 cut(s)	176, 260, 976, 1741
XbaI	TCTAGA	1 cut(s)	718
XceI	RCATGY	2 cut(s)	956, 1442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1169
XmnI	GAANNNNTTC	2 cut(s)	468, 1500
XspI	CTAG	7 cut(s)	183, 513, 719, 786, 957, 1280, 1809
ZraI	GACGTC	1 cut(s)	111
ZrmI	AGTACT	1 cut(s)	429
Zsp2I	ATGCAT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.