Rorug03G0103800

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002522
Physical Location & Seq
Reverse (-)
8164396 .. 8172995
8600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0103800.1

Sequence Viewer

Length: 2886 bp
ATGGCCACCCTCGCAATCGGTTCCAGCCTCACTTTACTTCGCGCCAACCAAAACGACGCCGCACAGAATAAGCCTCTTATCTACACTCCCAATTTCAACTCTCTCCGATTCAACCACAGCCTCAGAACCCACGCTTCGTCGTCGACGCGGTGCCGCGGCGTCCGAGCTCCACGCGCCGCCGCGGAGGTGGTGGTGGAGGATGTAGCTGTCGAGGGAGAGGAGAAGGACAAGGACAAGGACAAGGAGAATCGTAGGGTTCTGAGAGTCGGGGTCATCTGCGGTGGCCCCTCCGCCGAGCGTGGAATCTCTCTCAACTCCGCTAGATCAGTAATCGATCATATTCAAGGAGAGGATTTGCATGTGAGTTGCTACTACATTGACTCTGAACTCAACGCTTTTGCAATATCCCCTGCTCAGGTGTACTCCAACACTCCGGCGGATTTTGATTTCAAACTGGAAAGCCTTGCTCAAGGTTTCAAGTCTTGGTCTGACTTTGCGGACCATCTTGCTGTCAATGTGGACATAGTGTTTCCAGTCATACATGGTCAATTTGGTGAAGATGGCGGCATTCAGGAGGTGTTGGAAAGGTATAACATTCCATTTGTTGGCACGGGATCAAATGAGTGTCGTCAAGCATTCGACAAGTACAATGCCTCATTGGAGCTCAGCAGACATGGATTCGTAACTGTACCAAGTTGTTTAGTACAGGGAAGTAAAGCAGATGAACCTGAACTGTCGGAATGGTTTGCAAAAAATCAACTGGATCCTAAGTCTGGAAAAGTTGTGGTAAAACCAGCACGAGCAGGTTCAAGCATTGGTGTTACAGTTGCATATGGCTTGGCTGATTCTCTTAGCAAGGCTAATGCAATTATTACAGAGGGAATTGATTCCAAAGTCCTAGTTGAAATATTTCTTGAAGGAGGGAGTGAATTTACAGCAATTGTTCTTGATGTGGGGTATGGTACAGATTCTCATCCTGTTGTACTATTACCAACTGAGGTGGAACTTCAATTCCTTGGTAGTGTAGATGTTAGAGAGAAGGATGCAATCTTCAACTACCGCAGGAAATATCTTCCAACACAACAGGTTGCTTATCATACTCCACCTCGTTTTCCTATTGATGTCATCCAAAATATTCGAGATGGAGCATCTCAGTTATTCCAAAAGCTTGGCCTTCGTGACTTTGCTCGAATTGATGGATGGTTTCTGCCTAATTCTATTCATGTACCATCATCGCCAGATAGCAAGTTTGGAAGGACTGAGATGGGCACAATATTATACACTGACATTAACCTGATTAGTGGTATGGAGCAGACCAGCTTTTTATTCCAGCAAGCCTCAAAGGTTGGGTTTTCTCATGCAAATATTCTCCGGAGCATCATTAATCATGCTTGTTTGCGATTTCCACATCTTGCATCTTGTGATGTGTCTAGTGATTTGCCTAGAACATCAAAATCCCCACTGCTTAAAGATGATTGGGAAGGCACTCAGAAAGTTTTTGTTATTTTTGGAGGAGACACGTCAGAGAGGCAAGTATCTCTTATGAGCGGAACAAATGTTTGGCTCAATTTGCAAGCTTTTGATGATCTGGAAGTGCTTCCTTGCTTGCTTGCCCCCATGAATGGATATTCATCTAGTACTGATGTGGACAAAAATGAAGTTGATGCAACTTCCAAAACAGTTTGGTCATTACCTTATTCTCTTGTGCTAAGACACACCACGGAGGAAGTTCTTGCTGCATGTGTAGAGGCAATAGAACCAGACCGAGCTGCACTTACATCTCAATTACGGAACAGAGTTATTGATGATCTTATGGAAGGCTTCAAGAAACATTCTTGGTTTACAGGATTTGATATCACTGATGAACTGCCTGTTAAATTTTCTATTGAAGAGTGGATAAAGCTAGCCAAGGAAGTCAAGGCAACAGTATTTATTGCAGTGCATGGAGGCATTGGTGAAGATGGTACACTTCAGTCTTTGTTGGAGGCTGAAGGGATTCCACATACAGGTCCCGGTGTTTTGGCTTCAAAGATTTGTATGGACAAAGTCGCAACATCAGTTGCTCTTCAACATCTATCGGACTTGGGAGTTCTTACCATAAACAAAGATTTGAGAAGAAGAGATGAGCTCCTTAATACACCAATACCAAATGTATGGCATGAATTGACCTCCAAGCTTCAGTGTGAAACATTATGTGTTAAACCAGCAAGAGATGGATGCTCAACTGGAGTTGCAAGGTTATGCTGTGATGAAGACCTTTCAGTGTATGTAAAAGCATTGGAGGACTGTCTCCTTCGGATTCCCCCTAATAGTTTGTCAAAGGAACACGGAATGATCGAAATGCCAAACCCCCCTCCAGAGCTCCTAATCTTTGAACCTTTTATTGATACGGATGATATAATTGTTTCATTGAAGTCCATGAATGAAAATGGACATCACCTCATGTGGAATGGACAGAGTAGATGGGTTGAAATAACTGTTGGTGTTATTGGGAAACAAGGATCAATGCACTCATTGAGTCCCAGTATCACCGTGAAGGAGAGTGGTGATATTTTATCACTTGAGGAGAAATTTCAGGGTGGGACTGGCATCAATCTTACTCCACCTCCGTCATCGATCATTAGCCACGAGGCCTTGCAGAAATGTAAACAACACGTTGAAATGATTGCCAACACTTTAGAATTAGAAGGATTTTCACGAATTGATGCCTTTGTCAACGTGGATAGTGGAGAGGTGCTGGTTATAGAGGTCAATACAGTGCCTGGAATGACACCTTCCACTGTTCTGATTCATCAGGCACTAGCAGAGGAACCGCCCATGTATCCTCACCAGTTCTTCCGGACACTGCTTAATTTGGCTTCAGAGAGGACAATATACGTTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

961

Amino Acids

105.72

Weight (kDa)

5.15

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dala_Dala_lig_N PF01820 88 - 203 2.3e-24 D-ala D-ala ligase N-terminus
Dala_Dala_lig_C PF07478 261 - 399 3.5e-13 D-ala D-ala ligase C-terminus
Dala_Dala_lig_N PF01820 498 - 671 1.9e-17 D-ala D-ala ligase N-terminus
Dala_Dala_lig_C PF07478 823 - 929 5e-12 D-ala D-ala ligase C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 794
AccB1I GGYRCC 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 605
AccBSI CCGCTC 1 cut(s) 1548
AccI GTMKAC 1 cut(s) 143
AccII CGCG 5 cut(s) 42, 148, 156, 174, 182
AccIII TCCGGA 2 cut(s) 1371, 2838
AclWI GGATC 4 cut(s) 622, 758, 771, 2509
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 929, 1877, 2570
AcuI CTGAAG 4 cut(s) 1955, 2010, 2162, 2844
AcyI GRCGYC 2 cut(s) 57, 159
AfaI GTAC 9 cut(s) 422, 647, 690, 705, 964, 984, 1227, 1639, 1966
AfiI CCNNNNNNNGG 5 cut(s) 415, 605, 773, 1622, 2006
AflIII ACRYGT 2 cut(s) 1518, 2653
AjiI CACGTC 1 cut(s) 1521
AjnI CCWGG 1 cut(s) 2761
AjuI GAANNNNNNNTTGG 4 cut(s) 1543, 1575, 2463, 2495
AloI GAACNNNNNNTCC 2 cut(s) 996, 1028
Alw21I GWGCWC 4 cut(s) 169, 666, 2130, 2364
Alw26I GTCTC 2 cut(s) 1509, 2294
AlwI GGATC 4 cut(s) 622, 758, 771, 2509
AlwNI CAGNNNCTG 1 cut(s) 2762
Aor13HI TCCGGA 2 cut(s) 1371, 2838
AoxI GGCC 4 cut(s) 3, 283, 1171, 2631
ApeKI GCWGC 2 cut(s) 1736, 1769
ApoI RAATTY 3 cut(s) 929, 1877, 2570
AseI ATTAAT 1 cut(s) 1383
Asp700I GAANNNNTTC 4 cut(s) 886, 909, 1596, 1995
AspLEI GCGC 2 cut(s) 44, 176
AspS9I GGNCC 3 cut(s) 284, 499, 2009
AsuC2I CCSGG 1 cut(s) 2013
AsuHPI GGTGA 6 cut(s) 566, 1967, 2429, 2521, 2558, 2819
AsuNHI GCTAGC 1 cut(s) 1903
AvaII GGWCC 2 cut(s) 499, 2009
BaeGI GKGCMC 1 cut(s) 1271
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 763
BanI GGYRCC 1 cut(s) 150
BanII GRGCYC 4 cut(s) 169, 666, 2130, 2364
BauI CACGAG 2 cut(s) 798, 2627
BbsI GAAGAC 1 cut(s) 2259
Bbv12I GWGCWC 4 cut(s) 169, 666, 2130, 2364
BbvI GCAGC 2 cut(s) 1723, 1756
BciT130I CCWGG 1 cut(s) 2763
BciVI GTATCC 1 cut(s) 2832
BcnI CCSGG 1 cut(s) 2013
BcoDI GTCTC 2 cut(s) 1509, 2294
BfaI CTAG 7 cut(s) 321, 899, 1431, 1443, 1635, 1904, 2801
BfuAI ACCTGC 1 cut(s) 794
BfuI GTATCC 1 cut(s) 2832
BisI GCNGC 8 cut(s) 60, 154, 157, 177, 180, 565, 1737, 1770
BlpI GCTNAGC 1 cut(s) 665
BlsI GCNGC 8 cut(s) 61, 155, 158, 178, 181, 566, 1738, 1771
BmcAI AGTACT 1 cut(s) 1639
Bme1390I CCNGG 2 cut(s) 2013, 2763
Bme18I GGWCC 2 cut(s) 499, 2009
BmgBI CACGTC 1 cut(s) 1521
BmgT120I GGNCC 3 cut(s) 284, 499, 2009
BmiI GGNNCC 6 cut(s) 22, 152, 286, 765, 2011, 2811
BmrFI CCNGG 2 cut(s) 2013, 2763
BmrI ACTGGG 1 cut(s) 2517
BmsI GCATC 8 cut(s) 1033, 1157, 1386, 1424, 1654, 2207, 2598, 2695
BmtI GCTAGC 1 cut(s) 1907
BmuI ACTGGG 1 cut(s) 2517
BpiI GAAGAC 1 cut(s) 2259
BplI GAGNNNNNCTC 2 cut(s) 2112, 2144
BpmI CTGGAG 2 cut(s) 2247, 2340
Bpu10I CCTNAGC 1 cut(s) 414
Bpu1102I GCTNAGC 1 cut(s) 665
BpuEI CTTGAG 2 cut(s) 453, 2582
BpuMI CCSGG 1 cut(s) 2013
Bsa29I ATCGAT 2 cut(s) 333, 2615
BsaBI GATNNNNATC 2 cut(s) 972, 1630
BsaHI GRCGYC 2 cut(s) 57, 159
BsaJI CCNNGG 5 cut(s) 154, 180, 1015, 1719, 1908
BsaWI WCCGGW 2 cut(s) 1371, 2838
BsaXI ACNNNNNCTCC 2 cut(s) 2590, 2620
Bsc4I CCNNNNNNNGG 5 cut(s) 415, 605, 773, 1622, 2006
Bse1I ACTGG 7 cut(s) 459, 533, 765, 2230, 2523, 2590, 2830
Bse8I GATNNNNATC 2 cut(s) 972, 1630
BseAI TCCGGA 2 cut(s) 1371, 2838
BseBI CCWGG 1 cut(s) 2763
BseCI ATCGAT 2 cut(s) 333, 2615
BseDI CCNNGG 5 cut(s) 154, 180, 1015, 1719, 1908
BseGI GGATG 7 cut(s) 205, 973, 1048, 1125, 1205, 2222, 2398
BseJI GATNNNNATC 2 cut(s) 972, 1630
BseLI CCNNNNNNNGG 5 cut(s) 415, 605, 773, 1622, 2006
BseMII CTCAG 8 cut(s) 136, 251, 428, 679, 987, 1166, 1251, 1502
BseNI ACTGG 7 cut(s) 459, 533, 765, 2230, 2523, 2590, 2830
BseRI GAGGAG 3 cut(s) 233, 1527, 2579
BseSI GKGCMC 1 cut(s) 1271
BseXI GCAGC 2 cut(s) 1723, 1756
BsgI GTGCAG 1 cut(s) 1755
Bsh1236I CGCG 5 cut(s) 42, 148, 156, 174, 182
BshFI GGCC 4 cut(s) 5, 285, 1173, 2633
BshNI GGYRCC 1 cut(s) 150
BshVI ATCGAT 2 cut(s) 333, 2615
BsiHKAI GWGCWC 4 cut(s) 169, 666, 2130, 2364
BsiSI CCGG 4 cut(s) 434, 1372, 2013, 2839
BslFI GGGAC 3 cut(s) 1995, 2505, 2596
BslI CCNNNNNNNGG 5 cut(s) 415, 605, 773, 1622, 2006
BsmAI GTCTC 2 cut(s) 1509, 2294
BsmFI GGGAC 3 cut(s) 1995, 2505, 2596
BsmI GAATGC 2 cut(s) 567, 635
BsnI GGCC 4 cut(s) 5, 285, 1173, 2633
Bsp1286I GDGCHC 5 cut(s) 169, 666, 1271, 2130, 2364
Bsp13I TCCGGA 2 cut(s) 1371, 2838
Bsp143I GATC 9 cut(s) 323, 334, 614, 763, 1585, 1807, 2334, 2501, 2616
Bsp1720I GCTNAGC 1 cut(s) 665
BspANI GGCC 4 cut(s) 5, 285, 1173, 2633
BspCNI CTCAG 8 cut(s) 135, 252, 427, 678, 988, 1165, 1252, 1501
BspDI ATCGAT 2 cut(s) 333, 2615
BspEI TCCGGA 2 cut(s) 1371, 2838
BspFNI CGCG 5 cut(s) 42, 148, 156, 174, 182
BspLI GGNNCC 6 cut(s) 22, 152, 286, 765, 2011, 2811
BspMI ACCTGC 1 cut(s) 794
BspOI GCTAGC 1 cut(s) 1907
BspPI GGATC 4 cut(s) 622, 758, 771, 2509
BspQI GCTCTTC 1 cut(s) 2070
BspT107I GGYRCC 1 cut(s) 150
BsrBI CCGCTC 1 cut(s) 1548
BsrI ACTGG 7 cut(s) 459, 533, 765, 2230, 2523, 2590, 2830
BssECI CCNNGG 5 cut(s) 154, 180, 1015, 1719, 1908
BssMI GATC 9 cut(s) 323, 334, 614, 763, 1585, 1807, 2334, 2501, 2616
BssNI GRCGYC 2 cut(s) 57, 159
BssSI CACGAG 2 cut(s) 798, 2627
BssT1I CCWWGG 2 cut(s) 1015, 1908
Bst2BI CACGAG 2 cut(s) 798, 2627
Bst2UI CCWGG 1 cut(s) 2763
Bst6I CTCTTC 3 cut(s) 1884, 2070, 2113
BstACI GRCGYC 2 cut(s) 57, 159
BstC8I GCNNGC 5 cut(s) 1335, 1575, 1607, 1611, 1905
BstDSI CCRYGG 3 cut(s) 154, 180, 1719
BstF5I GGATG 7 cut(s) 205, 973, 1048, 1125, 1205, 2222, 2398
BstFNI CGCG 5 cut(s) 42, 148, 156, 174, 182
BstHHI GCGC 2 cut(s) 44, 176
BstKTI GATC 9 cut(s) 326, 337, 617, 766, 1588, 1810, 2337, 2504, 2619
BstMAI GTCTC 2 cut(s) 1509, 2294
BstMBI GATC 9 cut(s) 323, 334, 614, 763, 1585, 1807, 2334, 2501, 2616
BstMWI GCNNNNNNNGC 3 cut(s) 11, 173, 1570
BstNI CCWGG 1 cut(s) 2763
BstNSI RCATGY 2 cut(s) 362, 1743
BstSCI CCNGG 2 cut(s) 2011, 2761
BstSLI GKGCMC 1 cut(s) 1271
BstUI CGCG 5 cut(s) 42, 148, 156, 174, 182
BstV1I GCAGC 2 cut(s) 1723, 1756
BstV2I GAAGAC 1 cut(s) 2259
BstX2I RGATCY 1 cut(s) 763
BstXI CCANNNNNNTGG 2 cut(s) 1169, 2154
BstYI RGATCY 1 cut(s) 763
Bsu15I ATCGAT 2 cut(s) 333, 2615
BsuI GTATCC 1 cut(s) 2832
BsuRI GGCC 4 cut(s) 5, 285, 1173, 2633
BsuTUI ATCGAT 2 cut(s) 333, 2615
BtgI CCRYGG 3 cut(s) 154, 180, 1719
BtgZI GCGATG 1 cut(s) 1218
BtrI CACGTC 1 cut(s) 1521
BtsCI GGATG 7 cut(s) 205, 973, 1048, 1125, 1205, 2222, 2398
BtsI GCAGTG 3 cut(s) 1460, 1944, 2843
BtsIMutI CAGTG 9 cut(s) 1281, 1460, 1857, 1944, 2186, 2268, 2763, 2778, 2843
BveI ACCTGC 1 cut(s) 794
Cac8I GCNNGC 5 cut(s) 1335, 1575, 1607, 1611, 1905
CaiI CAGNNNCTG 1 cut(s) 2762
CfoI GCGC 2 cut(s) 44, 176
Cfr13I GGNCC 3 cut(s) 284, 499, 2009
Cfr42I CCGCGG 2 cut(s) 157, 183
ClaI ATCGAT 2 cut(s) 333, 2615
CseI GACGC 3 cut(s) 65, 148, 154
Csp6I GTAC 9 cut(s) 421, 646, 689, 704, 963, 983, 1226, 1638, 1965
CspCI CAANNNNNGTGG 2 cut(s) 981, 1016
CviQI GTAC 9 cut(s) 421, 646, 689, 704, 963, 983, 1226, 1638, 1965
DpnI GATC 9 cut(s) 325, 336, 616, 765, 1587, 1809, 2336, 2503, 2618
DpnII GATC 9 cut(s) 323, 334, 614, 763, 1585, 1807, 2334, 2501, 2616
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 1884, 2070, 2113
EarI CTCTTC 3 cut(s) 1884, 2070, 2113
EciI GGCGGA 2 cut(s) 280, 452
Ecl136II GAGCTC 4 cut(s) 167, 664, 2128, 2362
Eco130I CCWWGG 2 cut(s) 1015, 1908
Eco147I AGGCCT 1 cut(s) 2633
Eco24I GRGCYC 4 cut(s) 169, 666, 2130, 2364
Eco32I GATATC 1 cut(s) 1855
Eco47I GGWCC 2 cut(s) 499, 2009
Eco53kI GAGCTC 4 cut(s) 167, 664, 2128, 2362
Eco57I CTGAAG 4 cut(s) 1955, 2010, 2162, 2844
EcoICRI GAGCTC 4 cut(s) 167, 664, 2128, 2362
EcoO109I RGGNCCY 1 cut(s) 2009
EcoRII CCWGG 1 cut(s) 2761
EcoRV GATATC 1 cut(s) 1855
EcoT14I CCWWGG 2 cut(s) 1015, 1908
EcoT38I GRGCYC 4 cut(s) 169, 666, 2130, 2364
ErhI CCWWGG 2 cut(s) 1015, 1908
FalI AAGNNNNNCTT 2 cut(s) 1524, 1556
FaqI GGGAC 3 cut(s) 1995, 2505, 2596
FauNDI CATATG 1 cut(s) 832
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 8 cut(s) 60, 154, 157, 177, 180, 565, 1737, 1770
FokI GGATG 7 cut(s) 212, 960, 1055, 1112, 1212, 2229, 2405
FriOI GRGCYC 4 cut(s) 169, 666, 2130, 2364
Fsp4HI GCNGC 8 cut(s) 60, 154, 157, 177, 180, 565, 1737, 1770
FspBI CTAG 7 cut(s) 321, 899, 1431, 1443, 1635, 1904, 2801
GlaI GCGC 2 cut(s) 43, 175
GluI GCNGC 8 cut(s) 60, 154, 157, 177, 180, 565, 1737, 1770
GsuI CTGGAG 2 cut(s) 2247, 2340
HaeIII GGCC 4 cut(s) 5, 285, 1173, 2633
HapII CCGG 4 cut(s) 434, 1372, 2013, 2839
HgaI GACGC 3 cut(s) 65, 148, 154
HhaI GCGC 2 cut(s) 44, 176
Hin1I GRCGYC 2 cut(s) 57, 159
Hin6I GCGC 2 cut(s) 42, 174
HinP1I GCGC 2 cut(s) 42, 174
HincII GTYRAC 2 cut(s) 144, 2716
HindII GTYRAC 2 cut(s) 144, 2716
HindIII AAGCTT 3 cut(s) 1166, 1575, 2174
HpaII CCGG 4 cut(s) 434, 1372, 2013, 2839
HphI GGTGA 6 cut(s) 566, 1967, 2429, 2521, 2558, 2819
Hpy166II GTNNAC 8 cut(s) 144, 421, 520, 1648, 1842, 1967, 2648, 2716
Hpy8I GTNNAC 8 cut(s) 144, 421, 520, 1648, 1842, 1967, 2648, 2716
Hpy99I CGWCG 4 cut(s) 59, 142, 145, 148
HpyCH4IV ACGT 4 cut(s) 1520, 2655, 2718, 2877
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 173, 1570
HpySE526I ACGT 4 cut(s) 1520, 2655, 2718, 2877
Hsp92I GRCGYC 2 cut(s) 57, 159
HspAI GCGC 2 cut(s) 42, 174
Kpn2I TCCGGA 2 cut(s) 1371, 2838
KspI CCGCGG 2 cut(s) 157, 183
Kzo9I GATC 9 cut(s) 323, 334, 614, 763, 1585, 1807, 2334, 2501, 2616
LguI GCTCTTC 1 cut(s) 2070
LmnI GCTCC 7 cut(s) 172, 661, 1145, 1309, 1374, 2133, 2367
Lsp1109I GCAGC 2 cut(s) 1723, 1756
LweI GCATC 8 cut(s) 1033, 1157, 1386, 1424, 1654, 2207, 2598, 2695
MaeI CTAG 7 cut(s) 321, 899, 1431, 1443, 1635, 1904, 2801
MaeII ACGT 4 cut(s) 1520, 2655, 2718, 2877
MaeIII GTNAC 3 cut(s) 682, 820, 1178
MalI GATC 9 cut(s) 325, 336, 616, 765, 1587, 1809, 2336, 2503, 2618
MbiI CCGCTC 1 cut(s) 1548
MboI GATC 9 cut(s) 323, 334, 614, 763, 1585, 1807, 2334, 2501, 2616
MfeI CAATTG 1 cut(s) 939
MflI RGATCY 1 cut(s) 763
MhlI GDGCHC 5 cut(s) 169, 666, 1271, 2130, 2364
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 273, 374, 2527
MmeI TCCRAC 5 cut(s) 450, 561, 717, 1100, 1962
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 2 cut(s) 1371, 2838
MroXI GAANNNNTTC 4 cut(s) 886, 909, 1596, 1995
MscI TGGCCA 1 cut(s) 5
MseI TTAA 7 cut(s) 1290, 1383, 1467, 1875, 2133, 2199, 2850
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 156, 182
MspI CCGG 4 cut(s) 434, 1372, 2013, 2839
MspR9I CCNGG 2 cut(s) 2013, 2763
MunI CAATTG 1 cut(s) 939
Mva1269I GAATGC 2 cut(s) 567, 635
MvaI CCWGG 1 cut(s) 2763
MvnI CGCG 5 cut(s) 42, 148, 156, 174, 182
MwoI GCNNNNNNNGC 3 cut(s) 11, 173, 1570
NciI CCSGG 1 cut(s) 2013
NdeI CATATG 1 cut(s) 832
NdeII GATC 9 cut(s) 323, 334, 614, 763, 1585, 1807, 2334, 2501, 2616
NheI GCTAGC 1 cut(s) 1903
NlaIV GGNNCC 6 cut(s) 22, 152, 286, 765, 2011, 2811
NmeAIII GCCGAG 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 1178
NspI RCATGY 2 cut(s) 362, 1743
PceI AGGCCT 1 cut(s) 2633
PciSI GCTCTTC 1 cut(s) 2070
PcsI WCGNNNNNNNCGW 1 cut(s) 2334
PctI GAATGC 2 cut(s) 567, 635
PdmI GAANNNNTTC 4 cut(s) 886, 909, 1596, 1995
PflFI GACNNNGTC 1 cut(s) 2045
PflMI CCANNNNNTGG 1 cut(s) 605
PkrI GCNGC 8 cut(s) 61, 155, 158, 178, 181, 566, 1738, 1771
PleI GAGTC 3 cut(s) 272, 374, 2526
PpsI GAGTC 3 cut(s) 272, 374, 2526
PpuMI RGGWCCY 1 cut(s) 2009
PshBI ATTAAT 1 cut(s) 1383
Psp124BI GAGCTC 4 cut(s) 169, 666, 2130, 2364
Psp5II RGGWCCY 1 cut(s) 2009
Psp6I CCWGG 1 cut(s) 2761
PspGI CCWGG 1 cut(s) 2761
PspN4I GGNNCC 6 cut(s) 22, 152, 286, 765, 2011, 2811
PspPI GGNCC 3 cut(s) 284, 499, 2009
PspPPI RGGWCCY 1 cut(s) 2009
PstNI CAGNNNCTG 1 cut(s) 2762
PsuI RGATCY 1 cut(s) 763
PsyI GACNNNGTC 1 cut(s) 2045
RsaI GTAC 9 cut(s) 422, 647, 690, 705, 964, 984, 1227, 1639, 1966
RsaNI GTAC 9 cut(s) 421, 646, 689, 704, 963, 983, 1226, 1638, 1965
SacI GAGCTC 4 cut(s) 169, 666, 2130, 2364
SacII CCGCGG 2 cut(s) 157, 183
SalI GTCGAC 1 cut(s) 142
SapI GCTCTTC 1 cut(s) 2070
SaqAI TTAA 7 cut(s) 1290, 1383, 1467, 1875, 2133, 2199, 2850
SatI GCNGC 8 cut(s) 60, 154, 157, 177, 180, 565, 1737, 1770
Sau3AI GATC 9 cut(s) 323, 334, 614, 763, 1585, 1807, 2334, 2501, 2616
Sau96I GGNCC 3 cut(s) 284, 499, 2009
ScaI AGTACT 1 cut(s) 1639
SchI GAGTC 3 cut(s) 273, 374, 2527
ScrFI CCNGG 2 cut(s) 2013, 2763
SduI GDGCHC 5 cut(s) 169, 666, 1271, 2130, 2364
SfaNI GCATC 8 cut(s) 1033, 1157, 1386, 1424, 1654, 2207, 2598, 2695
Sfr303I CCGCGG 2 cut(s) 157, 183
SgrBI CCGCGG 2 cut(s) 157, 183
SgrDI CGTCGACG 1 cut(s) 142
SinI GGWCC 2 cut(s) 499, 2009
SmlI CTYRAG 2 cut(s) 468, 2561
SmoI CTYRAG 2 cut(s) 468, 2561
SseBI AGGCCT 1 cut(s) 2633
SspI AATATT 4 cut(s) 909, 1135, 1275, 1366
SspMI CTAG 7 cut(s) 321, 899, 1431, 1443, 1635, 1904, 2801
SstI GAGCTC 4 cut(s) 169, 666, 2130, 2364
StuI AGGCCT 1 cut(s) 2633
StyD4I CCNGG 2 cut(s) 2011, 2761
StyI CCWWGG 2 cut(s) 1015, 1908
TaiI ACGT 4 cut(s) 1523, 2658, 2721, 2880
TaqI TCGA 8 cut(s) 143, 210, 333, 639, 1138, 1189, 2337, 2615
TaqII GACCGA 1 cut(s) 1779
TatI WGTACW 5 cut(s) 420, 645, 703, 982, 1637
TauI GCSGC 6 cut(s) 62, 156, 159, 179, 182, 567
Tru1I TTAA 7 cut(s) 1290, 1383, 1467, 1875, 2133, 2199, 2850
Tru9I TTAA 7 cut(s) 1290, 1383, 1467, 1875, 2133, 2199, 2850
TscAI CASTG 9 cut(s) 1288, 1467, 1864, 1944, 2186, 2268, 2763, 2785, 2850
TseFI GTSAC 1 cut(s) 1178
TseI GCWGC 2 cut(s) 1736, 1769
Tsp45I GTSAC 1 cut(s) 1178
TspGWI ACGGA 5 cut(s) 1736, 1804, 2343, 2405, 2598
TspRI CASTG 9 cut(s) 1288, 1467, 1864, 1944, 2186, 2268, 2763, 2785, 2850
Tth111I GACNNNGTC 1 cut(s) 2045
Van91I CCANNNNNTGG 1 cut(s) 605
VpaK11BI GGWCC 2 cut(s) 499, 2009
VspI ATTAAT 1 cut(s) 1383
XapI RAATTY 3 cut(s) 929, 1877, 2570
XceI RCATGY 2 cut(s) 362, 1743
XmiI GTMKAC 1 cut(s) 143
XmnI GAANNNNTTC 4 cut(s) 886, 909, 1596, 1995
XspI CTAG 7 cut(s) 321, 899, 1431, 1443, 1635, 1904, 2801
ZrmI AGTACT 1 cut(s) 1639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.