Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002522

Physical Location & Seq

Genomic Coordinates Reverse (-)

17881903 .. 17884922

Gene Structure 3020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG198400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1926 bp

ATGTCTGCCCATTTGAGAAGGCCGCCGGAGGACATGGCTTGCATGAAGCTGGGAGTGAAGTCTGAAGCATTTCATCGGGAAGGCCAGACTTGGGTTTGCACAACTGGGCTACCGAGCGATATTATTGTTCAAGTTGGGGAAATGTCTTTCCACCTCCATAAGTTTCCGTTGCTTTCTAAAAGTGGGCTATTAGAGCAGCTTATCGAACAGTGTTGTATGGAGGAAAGCTCACTTTGTGCATTGAAACTTCATGGTGTGCCTGGGGGAGCTAAAGCATTTGAGCTTGTAACCAAATTTTGCTATGGTGTCAAAATAGAGCTGACTGCGTTGAATGTTGTCATCCTTAGATGTGCAGCAGAATACCTCCGGATGACTGAAGAATATGAACAAGGAAACCTCATTGCACAAACAGAGGTTTTCCTTAATGAAGTCTTCGGCAGTTGGAGAGACTCCATAATAGCTCTTGAAACATGTGAAGAAGTGCAACCATATGTCGAAGAGCTCCACATTGTGTCAAGATGCATTGATTCACTGGCTACAAAAGCTTGTTCAGACCCAAAGCTGTTCAGCAGGCCTATGTCGGGAGGAAGTGACATTAAGAAGCCAACTGGCACTGTGTCATGGAATGGAATTGCTGCTGAATGTAAGCCACAATCTCCCGGCGAAAATTGGTGGTATGAAGATACATCCTTCCTGAGCTTACCTCTCTATAAACGCCTGATTCAAGCTGTCGAATCAAAAGGCATGAGGCCCGAGAGTATTGCAGCTTCTCTTATAACCTATGCTAGAAAGTATCTGCCCTTGATGAATAGGCTATCAAGCTTTAACGATGCAAATCATGCAAACTCGGGCACAAACATTTCTGATGAAGACCAAAGGGTTTTACTTGAAGAAATTGTGGGGTTGCTTCCTAATAAGAAAGGAGTAACATCCTCCAAGTTTCTGCTTAGGCTCTTAAGAACTGCTATGATATTACATGCAAGTCAATCATGTAGAGATAATTTGGAGAAAAGGGTGGGTGTACAGCTGGACCAAGCTGTTCTCATTGATCTTCTCATACCAAATATGGGCTACTCAGTGGAGACTCTTTATGACATAGACTGCATTCAGAGGATTCTTGATCATTTCATGTTGGTAAACCAGCCTTATCCATCATCTTCACCATGCATAATTGAAGAGGGGCAACTGATGACTGGCACTGATCCATTGACACCTATTACCATGGTGGCCAGTCTGGTAGATGGATATCTTGCCGAGGTAGCACCAGATGTTAATTTGAAGTTACCGAAATTTCAGGCACTCGCTGCTGTCATACCTGAATATGCCAGGCCGCTGGATGATGGCATTTATCATGCCATTGATGTTTTCTTGAAGGCACATCCTTGGCTTACAGATGCTGAAAGGGAGCTACTATGTAGACTCATGAACTGCAATAAACTCTCATTGGAAGCCAGCACCCATGCAGCGCAGAACGAAAGGTTACCTCTTCGAGTAATTGTTCAAGTCCTCTTCTTCGAACAGCTTAGACTTCGAACATCAATTTCTGGTTGGTTGTTTGTTGACAATCTTGAGAACTCACAAAATCCTAGTGGAAACCTTGGGCTCCCCAGCAAAAATGATGGGTCCAATCAAGTAGACCCTGCACAAGTTGATCGAGCTGTGGGTTTTGATCATGAGGTGAGGGAGCGTGTTTTGGAGCTCCAAAAGGAGTGTTCAAGTATGAAAAAGGAGCTTCAGAAGCTGGTAAAAAACAAGAGAAGTTGGAGCATTCTTCCCATTAGGTTAGGTTTTAGAAAAAAGGTTGATCCTTGTTGTCCAAAAGAATCAAAGGCCTCTGATAGGATGACACCAGCATCATGTTTCAGTGGGCAACAAAATCATGTGAATGGTGAAGTGCCTCATTCACCTGCAACGCCTCAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

641

Amino Acids

71.57

Weight (kDa)

5.84

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	38 - 126	1.2e-06	BTB/POZ domain
NPH3	PF03000	223 - 485	1.8e-93	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002522)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03250 AT5G03250
fragaria_vesca	FvH4_6g16010 FvH4_7g19310 FvH4_7g19310 FvH4_7g19310
malus_domestica	MD01G1107700.v1.1 MD04G1096800.v1.1 MD07G1173300.v1.1
prunus_persica	Prupe.2G212500_v2.0.a1 Prupe.6G236100_v2.0.a1
pyrus_communis	pycom01g13460 pycom04g09190 pycom07g16800 pycom12g11690
rosa_chinensis	RchiOBHm_Chr1g0363191 RchiOBHm_Chr3g0469731
rosa_laevigata	RLG00000024326 RLG00000027585
rosa_multiflora	Rmu_sc0002925.1_g000004 Rmu_sc0010644.1_g000001 Rmu_sc0022819.1_g000002
rosa_roxburghii	Rroxscaffold_4G00293390 Rroxscaffold_6G00411520
rosa_rugosa	Rorug01G0305300 Rorug03G0103400 Rorug03G0103500 Rorug03G0103600 Rorug03G0103700 Rorug03G0103800 Rorug03G0103800
rosa_samantha	Rh1AG314100 Rh1BG277600 Rh1CG294000 Rh1DG308300 Rh3AG153200 Rh3BG177200 Rh3CG168100 Rh3DG198400
rosa_wichuraiana	Rw1G027830 Rw3G014440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	776
AarI	CACCTGC	1 cut(s)	1915
Acc36I	ACCTGC	1 cut(s)	1915
AccI	GTMKAC	2 cut(s)	1417, 1635
AccIII	TCCGGA	1 cut(s)	366
AciI	CCGC	2 cut(s)	23, 1331
AclWI	GGATC	2 cut(s)	1196, 1799
AcoI	YGGCCR	1 cut(s)	1227
AcsI	RAATTY	2 cut(s)	293, 1289
AcuI	CTGAAG	3 cut(s)	84, 396, 1718
AdeI	CACNNNGTG	2 cut(s)	236, 511
AfaI	GTAC	1 cut(s)	1023
AfiI	CCNNNNNNNGG	4 cut(s)	91, 581, 1067, 1839
AflII	CTTAAG	1 cut(s)	955
AflIII	ACRYGT	1 cut(s)	470
AjnI	CCWGG	2 cut(s)	259, 1325
Alw21I	GWGCWC	2 cut(s)	504, 1701
Alw26I	GTCTC	2 cut(s)	441, 1076
AlwI	GGATC	2 cut(s)	1196, 1799
AlwNI	CAGNNNCTG	2 cut(s)	1397, 1741
Ama87I	CYCGRG	2 cut(s)	752, 847
Aor13HI	TCCGGA	1 cut(s)	366
AoxI	GGCC	7 cut(s)	20, 82, 572, 749, 1227, 1328, 1830
ApeKI	GCWGC	6 cut(s)	196, 353, 635, 764, 1304, 1463
ApoI	RAATTY	2 cut(s)	293, 1289
Asp700I	GAANNNNTTC	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	1468
AspS9I	GGNCC	3 cut(s)	750, 1030, 1623
AsuC2I	CCSGG	1 cut(s)	660
AsuHPI	GGTGA	4 cut(s)	1152, 1690, 1896, 1901
AsuII	TTCGAA	2 cut(s)	1515, 1531
AvaI	CYCGRG	2 cut(s)	752, 847
AvaII	GGWCC	2 cut(s)	1030, 1623
BaeGI	GKGCMC	1 cut(s)	854
BalI	TGGCCA	1 cut(s)	1229
BanII	GRGCYC	3 cut(s)	504, 1605, 1701
BarI	GAAGNNNNNNTAC	2 cut(s)	751, 783
BbsI	GAAGAC	2 cut(s)	424, 876
Bbv12I	GWGCWC	2 cut(s)	504, 1701
BbvI	GCAGC	6 cut(s)	208, 365, 622, 776, 1291, 1475
BccI	CCATC	4 cut(s)	1159, 1235, 1334, 1613
BcgI	CGANNNNNNTGC	2 cut(s)	743, 777
BciT130I	CCWGG	2 cut(s)	261, 1327
BclI	TGATCA	2 cut(s)	1120, 1669
BcnI	CCSGG	1 cut(s)	660
BcoDI	GTCTC	2 cut(s)	441, 1076
BfaI	CTAG	2 cut(s)	786, 1587
BfrI	CTTAAG	1 cut(s)	955
BfuAI	ACCTGC	1 cut(s)	1915
BisI	GCNGC	8 cut(s)	23, 197, 354, 636, 765, 1305, 1331, 1464
BlsI	GCNGC	8 cut(s)	24, 198, 355, 637, 766, 1306, 1332, 1465
Bme1390I	CCNGG	3 cut(s)	261, 660, 1327
Bme18I	GGWCC	2 cut(s)	1030, 1623
BmeT110I	CYCGRG	2 cut(s)	752, 847
BmgT120I	GGNCC	3 cut(s)	750, 1030, 1623
BmiI	GGNNCC	2 cut(s)	1604, 1624
BmrFI	CCNGG	3 cut(s)	261, 660, 1327
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	4 cut(s)	509, 820, 1384, 1862
BmuI	ACTGGG	1 cut(s)	114
BpiI	GAAGAC	2 cut(s)	424, 876
BplI	GAGNNNNNCTC	4 cut(s)	212, 244, 688, 720
Bpu10I	CCTNAGC	2 cut(s)	695, 947
Bpu14I	TTCGAA	2 cut(s)	1515, 1531
BpuEI	CTTGAG	1 cut(s)	1589
BpuMI	CCSGG	1 cut(s)	660
BsaBI	GATNNNNATC	2 cut(s)	834, 1245
BsaJI	CCNNGG	5 cut(s)	260, 1221, 1254, 1382, 1597
BsaWI	WCCGGW	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	4 cut(s)	91, 581, 1067, 1839
Bse1I	ACTGG	5 cut(s)	109, 537, 613, 1198, 1230
Bse3DI	GCAATG	1 cut(s)	399
Bse8I	GATNNNNATC	2 cut(s)	834, 1245
BseAI	TCCGGA	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	261, 1327
BseDI	CCNNGG	5 cut(s)	260, 1221, 1254, 1382, 1597
BseGI	GGATG	7 cut(s)	339, 375, 686, 929, 1342, 1378, 1848
BseJI	GATNNNNATC	2 cut(s)	834, 1245
BseLI	CCNNNNNNNGG	4 cut(s)	91, 581, 1067, 1839
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	686, 1089
BseNI	ACTGG	5 cut(s)	109, 537, 613, 1198, 1230
BseSI	GKGCMC	1 cut(s)	854
BseXI	GCAGC	6 cut(s)	208, 365, 622, 776, 1291, 1475
BseYI	CCCAGC	2 cut(s)	49, 1607
BsgI	GTGCAG	2 cut(s)	372, 1626
BshFI	GGCC	7 cut(s)	22, 84, 574, 751, 1229, 1330, 1832
BsiHKAI	GWGCWC	2 cut(s)	504, 1701
BsiHKCI	CYCGRG	2 cut(s)	752, 847
BsiSI	CCGG	3 cut(s)	26, 367, 660
BslI	CCNNNNNNNGG	4 cut(s)	91, 581, 1067, 1839
BsmAI	GTCTC	2 cut(s)	441, 1076
BsmI	GAATGC	2 cut(s)	1104, 1767
BsnI	GGCC	7 cut(s)	22, 84, 574, 751, 1229, 1330, 1832
BsoBI	CYCGRG	2 cut(s)	752, 847
Bsp119I	TTCGAA	2 cut(s)	1515, 1531
Bsp1286I	GDGCHC	4 cut(s)	504, 854, 1605, 1701
Bsp13I	TCCGGA	1 cut(s)	366
Bsp1407I	TGTACA	1 cut(s)	1021
Bsp143I	GATC	6 cut(s)	1048, 1120, 1201, 1651, 1669, 1804
Bsp19I	CCATGG	1 cut(s)	1221
BspACI	CCGC	2 cut(s)	23, 1331
BspANI	GGCC	7 cut(s)	22, 84, 574, 751, 1229, 1330, 1832
BspCNI	CTCAG	2 cut(s)	687, 1088
BspEI	TCCGGA	1 cut(s)	366
BspHI	TCATGA	2 cut(s)	1422, 1672
BspLI	GGNNCC	2 cut(s)	1604, 1624
BspMI	ACCTGC	1 cut(s)	1915
BspPI	GGATC	2 cut(s)	1196, 1799
BspQI	GCTCTTC	1 cut(s)	492
BspT104I	TTCGAA	2 cut(s)	1515, 1531
BspTI	CTTAAG	1 cut(s)	955
BsrDI	GCAATG	1 cut(s)	399
BsrGI	TGTACA	1 cut(s)	1021
BsrI	ACTGG	5 cut(s)	109, 537, 613, 1198, 1230
BssECI	CCNNGG	5 cut(s)	260, 1221, 1254, 1382, 1597
BssMI	GATC	6 cut(s)	1048, 1120, 1201, 1651, 1669, 1804
BssT1I	CCWWGG	3 cut(s)	1221, 1382, 1597
Bst2UI	CCWGG	2 cut(s)	261, 1327
Bst4CI	ACNGT	2 cut(s)	210, 616
Bst6I	CTCTTC	4 cut(s)	492, 1170, 1491, 1514
BstAFI	CTTAAG	1 cut(s)	955
BstAPI	GCANNNNNTGC	2 cut(s)	839, 1304
BstAUI	TGTACA	1 cut(s)	1021
BstBI	TTCGAA	2 cut(s)	1515, 1531
BstC8I	GCNNGC	3 cut(s)	40, 572, 1453
BstDEI	CTNAG	5 cut(s)	344, 695, 947, 1075, 1523
BstDSI	CCRYGG	1 cut(s)	1221
BstEII	GGTNACC	1 cut(s)	1479
BstENI	CCTNNNNNAGG	1 cut(s)	1837
BstF5I	GGATG	7 cut(s)	339, 375, 686, 929, 1342, 1378, 1848
BstHHI	GCGC	1 cut(s)	1468
BstKTI	GATC	6 cut(s)	1051, 1123, 1204, 1654, 1672, 1807
BstMAI	GTCTC	2 cut(s)	441, 1076
BstMBI	GATC	6 cut(s)	1048, 1120, 1201, 1651, 1669, 1804
BstMWI	GCNNNNNNNGC	6 cut(s)	193, 542, 839, 1259, 1304, 1738
BstNI	CCWGG	2 cut(s)	261, 1327
BstNSI	RCATGY	2 cut(s)	474, 980
BstPI	GGTNACC	1 cut(s)	1479
BstSCI	CCNGG	3 cut(s)	259, 658, 1325
BstSLI	GKGCMC	1 cut(s)	854
BstV1I	GCAGC	6 cut(s)	208, 365, 622, 776, 1291, 1475
BstV2I	GAAGAC	2 cut(s)	424, 876
BstXI	CCANNNNNNTGG	1 cut(s)	1333
BsuRI	GGCC	7 cut(s)	22, 84, 574, 751, 1229, 1330, 1832
BtgI	CCRYGG	1 cut(s)	1221
BtsCI	GGATG	7 cut(s)	339, 375, 686, 929, 1342, 1378, 1848
BtsIMutI	CAGTG	6 cut(s)	215, 530, 612, 1083, 1197, 1870
BveI	ACCTGC	1 cut(s)	1915
Cac8I	GCNNGC	3 cut(s)	40, 572, 1453
CaiI	CAGNNNCTG	2 cut(s)	1397, 1741
CciI	TCATGA	2 cut(s)	1422, 1672
CfoI	GCGC	1 cut(s)	1468
Cfr13I	GGNCC	3 cut(s)	750, 1030, 1623
Csp6I	GTAC	1 cut(s)	1022
CviQI	GTAC	1 cut(s)	1022
DdeI	CTNAG	5 cut(s)	344, 695, 947, 1075, 1523
DpnI	GATC	6 cut(s)	1050, 1122, 1203, 1653, 1671, 1806
DpnII	GATC	6 cut(s)	1048, 1120, 1201, 1651, 1669, 1804
DraIII	CACNNNGTG	2 cut(s)	236, 511
EaeI	YGGCCR	1 cut(s)	1227
Eam1104I	CTCTTC	4 cut(s)	492, 1170, 1491, 1514
EarI	CTCTTC	4 cut(s)	492, 1170, 1491, 1514
Ecl136II	GAGCTC	2 cut(s)	502, 1699
Eco130I	CCWWGG	3 cut(s)	1221, 1382, 1597
Eco147I	AGGCCT	2 cut(s)	574, 1832
Eco24I	GRGCYC	3 cut(s)	504, 1605, 1701
Eco32I	GATATC	1 cut(s)	1247
Eco47I	GGWCC	2 cut(s)	1030, 1623
Eco53kI	GAGCTC	2 cut(s)	502, 1699
Eco57I	CTGAAG	3 cut(s)	84, 396, 1718
Eco88I	CYCGRG	2 cut(s)	752, 847
Eco91I	GGTNACC	1 cut(s)	1479
EcoICRI	GAGCTC	2 cut(s)	502, 1699
EcoNI	CCTNNNNNAGG	1 cut(s)	1837
EcoO65I	GGTNACC	1 cut(s)	1479
EcoRII	CCWGG	2 cut(s)	259, 1325
EcoRV	GATATC	1 cut(s)	1247
EcoT14I	CCWWGG	3 cut(s)	1221, 1382, 1597
EcoT22I	ATGCAT	2 cut(s)	524, 1169
EcoT38I	GRGCYC	3 cut(s)	504, 1605, 1701
ErhI	CCWWGG	3 cut(s)	1221, 1382, 1597
FauNDI	CATATG	1 cut(s)	490
FbaI	TGATCA	2 cut(s)	1120, 1669
FblI	GTMKAC	2 cut(s)	1417, 1635
Fnu4HI	GCNGC	8 cut(s)	23, 197, 354, 636, 765, 1305, 1331, 1464
FokI	GGATG	7 cut(s)	326, 382, 673, 916, 1349, 1365, 1855
FriOI	GRGCYC	3 cut(s)	504, 1605, 1701
Fsp4HI	GCNGC	8 cut(s)	23, 197, 354, 636, 765, 1305, 1331, 1464
FspBI	CTAG	2 cut(s)	786, 1587
GlaI	GCGC	1 cut(s)	1467
GluI	GCNGC	8 cut(s)	23, 197, 354, 636, 765, 1305, 1331, 1464
GsaI	CCCAGC	2 cut(s)	53, 1611
HaeIII	GGCC	7 cut(s)	22, 84, 574, 751, 1229, 1330, 1832
HapII	CCGG	3 cut(s)	26, 367, 660
HhaI	GCGC	1 cut(s)	1468
Hin6I	GCGC	1 cut(s)	1466
HinP1I	GCGC	1 cut(s)	1466
HincII	GTYRAC	1 cut(s)	1561
HindII	GTYRAC	1 cut(s)	1561
HindIII	AAGCTT	2 cut(s)	543, 820
HinfI	GANTC	8 cut(s)	449, 527, 721, 734, 1084, 1114, 1419, 1823
HpaII	CCGG	3 cut(s)	26, 367, 660
HphI	GGTGA	4 cut(s)	1152, 1690, 1896, 1901
Hpy166II	GTNNAC	5 cut(s)	1022, 1138, 1418, 1561, 1636
Hpy188I	TCNGA	6 cut(s)	64, 553, 865, 1110, 1737, 1837
Hpy8I	GTNNAC	5 cut(s)	1022, 1138, 1418, 1561, 1636
HpyAV	CCTTC	4 cut(s)	12, 74, 700, 1366
HpyCH4III	ACNGT	2 cut(s)	210, 616
HpyF10VI	GCNNNNNNNGC	6 cut(s)	193, 542, 839, 1259, 1304, 1738
HpyF3I	CTNAG	5 cut(s)	344, 695, 947, 1075, 1523
HspAI	GCGC	1 cut(s)	1466
Kpn2I	TCCGGA	1 cut(s)	366
Ksp22I	TGATCA	2 cut(s)	1120, 1669
Kzo9I	GATC	6 cut(s)	1048, 1120, 1201, 1651, 1669, 1804
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	9 cut(s)	266, 507, 1405, 1608, 1684, 1696, 1704, 1729, 1764
Lsp1109I	GCAGC	6 cut(s)	208, 365, 622, 776, 1291, 1475
LweI	GCATC	4 cut(s)	509, 820, 1384, 1862
MaeI	CTAG	2 cut(s)	786, 1587
MaeIII	GTNAC	5 cut(s)	286, 590, 925, 1281, 1479
MalI	GATC	6 cut(s)	1050, 1122, 1203, 1653, 1671, 1806
MboI	GATC	6 cut(s)	1048, 1120, 1201, 1651, 1669, 1804
MhlI	GDGCHC	4 cut(s)	504, 854, 1605, 1701
MlsI	TGGCCA	1 cut(s)	1229
MluNI	TGGCCA	1 cut(s)	1229
MlyI	GAGTC	3 cut(s)	443, 1078, 1413
MmeI	TCCRAC	2 cut(s)	422, 1742
Mox20I	TGGCCA	1 cut(s)	1229
Mph1103I	ATGCAT	2 cut(s)	524, 1169
MroI	TCCGGA	1 cut(s)	366
MroXI	GAANNNNTTC	1 cut(s)	69
MscI	TGGCCA	1 cut(s)	1229
MseI	TTAA	5 cut(s)	423, 597, 825, 956, 1272
MslI	CAYNNNNRTG	1 cut(s)	1884
Msp20I	TGGCCA	1 cut(s)	1229
MspA1I	CMGCKG	2 cut(s)	1027, 1333
MspCI	CTTAAG	1 cut(s)	955
MspI	CCGG	3 cut(s)	26, 367, 660
MspR9I	CCNGG	3 cut(s)	261, 660, 1327
Mva1269I	GAATGC	2 cut(s)	1104, 1767
MvaI	CCWGG	2 cut(s)	261, 1327
MwoI	GCNNNNNNNGC	6 cut(s)	193, 542, 839, 1259, 1304, 1738
NciI	CCSGG	1 cut(s)	660
NcoI	CCATGG	1 cut(s)	1221
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	6 cut(s)	1048, 1120, 1201, 1651, 1669, 1804
NlaIV	GGNNCC	2 cut(s)	1604, 1624
NmeAIII	GCCGAG	1 cut(s)	1279
NmuCI	GTSAC	1 cut(s)	590
NsiI	ATGCAT	2 cut(s)	524, 1169
NspI	RCATGY	2 cut(s)	474, 980
NspV	TTCGAA	2 cut(s)	1515, 1531
PagI	TCATGA	2 cut(s)	1422, 1672
PaqCI	CACCTGC	1 cut(s)	1915
PceI	AGGCCT	2 cut(s)	574, 1832
PciI	ACATGT	1 cut(s)	470
PciSI	GCTCTTC	1 cut(s)	492
PctI	GAATGC	2 cut(s)	1104, 1767
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	5 cut(s)	527, 721, 734, 1114, 1823
PkrI	GCNGC	8 cut(s)	24, 198, 355, 637, 766, 1306, 1332, 1465
PleI	GAGTC	3 cut(s)	443, 1078, 1413
PpsI	GAGTC	3 cut(s)	443, 1078, 1413
PscI	ACATGT	1 cut(s)	470
PsiI	TTATAA	1 cut(s)	776
Psp124BI	GAGCTC	2 cut(s)	504, 1701
Psp6I	CCWGG	2 cut(s)	259, 1325
PspEI	GGTNACC	1 cut(s)	1479
PspFI	CCCAGC	2 cut(s)	49, 1607
PspGI	CCWGG	2 cut(s)	259, 1325
PspN4I	GGNNCC	2 cut(s)	1604, 1624
PspPI	GGNCC	3 cut(s)	750, 1030, 1623
PstNI	CAGNNNCTG	2 cut(s)	1397, 1741
PvuII	CAGCTG	1 cut(s)	1027
RsaI	GTAC	1 cut(s)	1023
RsaNI	GTAC	1 cut(s)	1022
RseI	CAYNNNNRTG	1 cut(s)	1884
SacI	GAGCTC	2 cut(s)	504, 1701
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	5 cut(s)	423, 597, 825, 956, 1272
SatI	GCNGC	8 cut(s)	23, 197, 354, 636, 765, 1305, 1331, 1464
Sau3AI	GATC	6 cut(s)	1048, 1120, 1201, 1651, 1669, 1804
Sau96I	GGNCC	3 cut(s)	750, 1030, 1623
SchI	GAGTC	3 cut(s)	443, 1078, 1413
ScrFI	CCNGG	3 cut(s)	261, 660, 1327
SduI	GDGCHC	4 cut(s)	504, 854, 1605, 1701
SfaNI	GCATC	4 cut(s)	509, 820, 1384, 1862
SfuI	TTCGAA	2 cut(s)	1515, 1531
SinI	GGWCC	2 cut(s)	1030, 1623
SmiMI	CAYNNNNRTG	1 cut(s)	1884
SmlI	CTYRAG	2 cut(s)	955, 1568
SmoI	CTYRAG	2 cut(s)	955, 1568
SseBI	AGGCCT	2 cut(s)	574, 1832
SsiI	CCGC	2 cut(s)	23, 1331
SspMI	CTAG	2 cut(s)	786, 1587
SstI	GAGCTC	2 cut(s)	504, 1701
StuI	AGGCCT	2 cut(s)	574, 1832
StyD4I	CCNGG	3 cut(s)	259, 658, 1325
StyI	CCWWGG	3 cut(s)	1221, 1382, 1597
TaaI	ACNGT	2 cut(s)	210, 616
TaqI	TCGA	7 cut(s)	204, 495, 732, 1489, 1515, 1531, 1654
TatI	WGTACW	1 cut(s)	1021
TauI	GCSGC	2 cut(s)	25, 1333
TfiI	GAWTC	5 cut(s)	527, 721, 734, 1114, 1823
Tru1I	TTAA	5 cut(s)	423, 597, 825, 956, 1272
Tru9I	TTAA	5 cut(s)	423, 597, 825, 956, 1272
TscAI	CASTG	6 cut(s)	215, 537, 619, 1083, 1204, 1870
TseFI	GTSAC	1 cut(s)	590
TseI	GCWGC	6 cut(s)	196, 353, 635, 764, 1304, 1463
Tsp45I	GTSAC	1 cut(s)	590
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	6 cut(s)	215, 537, 619, 1083, 1204, 1870
Vha464I	CTTAAG	1 cut(s)	955
VpaK11BI	GGWCC	2 cut(s)	1030, 1623
XagI	CCTNNNNNAGG	1 cut(s)	1837
XapI	RAATTY	2 cut(s)	293, 1289
XceI	RCATGY	2 cut(s)	474, 980
XmiI	GTMKAC	2 cut(s)	1417, 1635
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	2 cut(s)	786, 1587
Zsp2I	ATGCAT	2 cut(s)	524, 1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.