Rorug03G0103600

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002522
Physical Location & Seq
Forward (+)
8150682 .. 8151752
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0103600.1

Sequence Viewer

Length: 603 bp
ATGAGCTCAAATATTCAGAGAAGGGGTTCTTCTTCTTCTTCTCGGAAGCAAAGAAGAAGGTCTCGCCCTAGAAGCCTTAATCCACTCAACATTAACGTTGCTGAAGCTAGGAGACAGGTTTACCATGCCTTGATCCTCCACAGAACATCATCAAAGTCATCATTTCAATCTTCTTCATCCTCATCATCCTCGCATGATGTTGTCAGTGGTACTTCTACGCAGCTATTGCAGTCGATGCCTCTGCCGGAGCCGGTTTGGTCAACCACGGCGCCTTCGGTGCCGCCTCGTGTGCCATATTCTGGGGGACCAGCCATGGAAGCAGCAGACATTGAATTTGAGTGGGGAGAGAACCAAGCTTCTTCCTATACTTGGTGGTTGGCTTTTTTGAAGAGTTTAGATGGTAATAATAGCACTACTAGTACTGTTCCTCAAGAGTTTAAGTACCCACTGGCATTGGGGAGTTCTAATTTGTTTTTTGGCCGGAGGCCTGGTGGTAATTTTAAAGTCGAAGAGGCAGATGAGCAGATCCCTTCACCAGATGAATGGTTGATAATTCCAACCACAGAAAATCATGAAGGTGAGTTTAATCATGTAATTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

200

Amino Acids

22.18

Weight (kDa)

6.98

Isoelectric Point (pI)

78.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 268, 277
AccB7I CCANNNNNTGG 1 cut(s) 299
AciI CCGC 1 cut(s) 281
AclI AACGTT 1 cut(s) 96
AclWI GGATC 2 cut(s) 127, 520
AcoI YGGCCR 1 cut(s) 478
AcsI RAATTY 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 3 cut(s) 211, 421, 443
AfiI CCNNNNNNNGG 2 cut(s) 299, 369
AgsI TTSAA 3 cut(s) 167, 332, 388
AhlI ACTAGT 1 cut(s) 416
AjnI CCWGG 1 cut(s) 487
AluBI AGCT 4 cut(s) 6, 107, 223, 356
AluI AGCT 4 cut(s) 6, 107, 223, 356
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 66, 106
AlwI GGATC 2 cut(s) 127, 520
AoxI GGCC 2 cut(s) 478, 485
ApeKI GCWGC 2 cut(s) 220, 320
ApoI RAATTY 1 cut(s) 332
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
Asp700I GAANNNNTTC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 2 cut(s) 525, 590
AvaII GGWCC 1 cut(s) 305
BanI GGYRCC 2 cut(s) 268, 277
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 232, 332
BccI CCATC 1 cut(s) 392
BceAI ACGGC 1 cut(s) 282
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BciT130I CCWGG 1 cut(s) 489
BcoDI GTCTC 2 cut(s) 66, 106
BcuI ACTAGT 1 cut(s) 416
BfaI CTAG 3 cut(s) 69, 108, 417
BfoI RGCGCY 1 cut(s) 272
BisI GCNGC 3 cut(s) 221, 281, 321
BlsI GCNGC 3 cut(s) 222, 282, 322
BmcAI AGTACT 1 cut(s) 421
Bme1390I CCNGG 1 cut(s) 489
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 4 cut(s) 249, 270, 279, 306
BmrFI CCNGG 1 cut(s) 489
BmsI GCATC 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 264, 312
BsaXI ACNNNNNCTCC 2 cut(s) 475, 505
Bsc4I CCNNNNNNNGG 2 cut(s) 299, 369
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 453
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 2 cut(s) 264, 312
BseGI GGATG 2 cut(s) 176, 185
BseLI CCNNNNNNNGG 2 cut(s) 299, 369
BseNI ACTGG 1 cut(s) 453
BseXI GCAGC 2 cut(s) 232, 332
BshFI GGCC 2 cut(s) 480, 487
BshNI GGYRCC 2 cut(s) 268, 277
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 3 cut(s) 245, 251, 481
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 2 cut(s) 299, 369
BsmAI GTCTC 2 cut(s) 66, 106
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 2 cut(s) 480, 487
Bso31I GGTCTC 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 132, 525
Bsp19I CCATGG 1 cut(s) 312
BspACI CCGC 1 cut(s) 281
BspANI GGCC 2 cut(s) 480, 487
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 4 cut(s) 249, 270, 279, 306
BspPI GGATC 2 cut(s) 127, 520
BspT107I GGYRCC 2 cut(s) 268, 277
BspTNI GGTCTC 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 1 cut(s) 453
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 264, 312
BssMI GATC 2 cut(s) 132, 525
BssNI GRCGYC 1 cut(s) 269
BssSI CACGAG 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 489
Bst4CI ACNGT 1 cut(s) 424
Bst6I CTCTTC 2 cut(s) 383, 504
BstACI GRCGYC 1 cut(s) 269
BstAPI GCANNNNNTGC 2 cut(s) 226, 235
BstDSI CCRYGG 2 cut(s) 264, 312
BstF5I GGATG 2 cut(s) 176, 185
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 2 cut(s) 135, 528
BstMAI GTCTC 2 cut(s) 66, 106
BstMBI GATC 2 cut(s) 132, 525
BstMWI GCNNNNNNNGC 6 cut(s) 72, 226, 235, 277, 289, 317
BstNI CCWGG 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 487
BstV1I GCAGC 2 cut(s) 232, 332
BstX2I RGATCY 1 cut(s) 525
BstXI CCANNNNNNTGG 1 cut(s) 543
BstYI RGATCY 1 cut(s) 525
BsuRI GGCC 2 cut(s) 480, 487
BtgI CCRYGG 2 cut(s) 264, 312
BtsCI GGATG 2 cut(s) 176, 185
BtsIMutI CAGTG 2 cut(s) 211, 446
CciI TCATGA 1 cut(s) 571
CfoI GCGC 1 cut(s) 271
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 305
Csp6I GTAC 3 cut(s) 210, 420, 442
CspCI CAANNNNNGTGG 2 cut(s) 435, 470
CviAII CATG 5 cut(s) 125, 194, 313, 572, 590
CviQI GTAC 3 cut(s) 210, 420, 442
DinI GGCGCC 1 cut(s) 270
DpnI GATC 2 cut(s) 134, 527
DpnII GATC 2 cut(s) 132, 525
DraI TTTAAA 1 cut(s) 502
EaeI YGGCCR 1 cut(s) 478
Eam1104I CTCTTC 2 cut(s) 383, 504
EarI CTCTTC 2 cut(s) 383, 504
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 312
Eco147I AGGCCT 1 cut(s) 487
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 305
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 8
EgeI GGCGCC 1 cut(s) 270
EheI GGCGCC 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 5 cut(s) 128, 197, 316, 575, 593
FaiI YATR 7 cut(s) 126, 195, 295, 314, 366, 573, 591
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 1 cut(s) 318
FatI CATG 5 cut(s) 124, 193, 312, 571, 589
Fnu4HI GCNGC 3 cut(s) 221, 281, 321
FokI GGATG 2 cut(s) 163, 172
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 221, 281, 321
FspBI CTAG 3 cut(s) 69, 108, 417
GlaI GCGC 1 cut(s) 270
GluI GCNGC 3 cut(s) 221, 281, 321
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 2 cut(s) 480, 487
HapII CCGG 3 cut(s) 245, 251, 481
HhaI GCGC 1 cut(s) 271
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 5 cut(s) 128, 197, 316, 575, 593
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HincII GTYRAC 1 cut(s) 261
HindII GTYRAC 1 cut(s) 261
HindIII AAGCTT 1 cut(s) 354
HpaII CCGG 3 cut(s) 245, 251, 481
HphI GGTGA 2 cut(s) 525, 590
Hpy166II GTNNAC 2 cut(s) 121, 261
Hpy188I TCNGA 2 cut(s) 18, 45
Hpy188III TCNNGA 2 cut(s) 431, 572
Hpy8I GTNNAC 2 cut(s) 121, 261
HpyAV CCTTC 5 cut(s) 15, 51, 282, 540, 569
HpyCH4III ACNGT 1 cut(s) 424
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 1 cut(s) 229
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 226, 235, 277, 289, 317
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 5 cut(s) 128, 197, 316, 575, 593
HspAI GCGC 1 cut(s) 269
KasI GGCGCC 1 cut(s) 268
Kzo9I GATC 2 cut(s) 132, 525
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 2 cut(s) 232, 332
LweI GCATC 1 cut(s) 225
MaeI CTAG 3 cut(s) 69, 108, 417
MaeII ACGT 1 cut(s) 96
MalI GATC 2 cut(s) 134, 527
MboI GATC 2 cut(s) 132, 525
MflI RGATCY 1 cut(s) 525
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 332, 466, 496, 552, 594
Mly113I GGCGCC 1 cut(s) 269
MmeI TCCRAC 1 cut(s) 581
MnlI CCTC 8 cut(s) 146, 190, 199, 249, 294, 438, 477, 505
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 5 cut(s) 78, 93, 438, 501, 585
MslI CAYNNNNRTG 1 cut(s) 576
MspI CCGG 3 cut(s) 245, 251, 481
MspR9I CCNGG 1 cut(s) 489
MvaI CCWGG 1 cut(s) 489
MwoI GCNNNNNNNGC 6 cut(s) 72, 226, 235, 277, 289, 317
NarI GGCGCC 1 cut(s) 269
NcoI CCATGG 1 cut(s) 312
NdeII GATC 2 cut(s) 132, 525
NlaIII CATG 5 cut(s) 128, 197, 316, 575, 593
NlaIV GGNNCC 4 cut(s) 249, 270, 279, 306
PagI TCATGA 1 cut(s) 571
PceI AGGCCT 1 cut(s) 487
PdmI GAANNNNTTC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 299
PkrI GCNGC 3 cut(s) 222, 282, 322
PluTI GGCGCC 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 8
Psp1406I AACGTT 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 487
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 4 cut(s) 249, 270, 279, 306
PspPI GGNCC 1 cut(s) 305
PsuI RGATCY 1 cut(s) 525
RsaI GTAC 3 cut(s) 211, 421, 443
RsaNI GTAC 3 cut(s) 210, 420, 442
RseI CAYNNNNRTG 1 cut(s) 576
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 5 cut(s) 78, 93, 438, 501, 585
SatI GCNGC 3 cut(s) 221, 281, 321
Sau3AI GATC 2 cut(s) 132, 525
Sau96I GGNCC 1 cut(s) 305
ScaI AGTACT 1 cut(s) 421
ScrFI CCNGG 1 cut(s) 489
SduI GDGCHC 1 cut(s) 8
SetI ASST 8 cut(s) 8, 62, 99, 109, 120, 225, 358, 580
SfaNI GCATC 1 cut(s) 225
SfoI GGCGCC 1 cut(s) 270
SinI GGWCC 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 576
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
SpeI ACTAGT 1 cut(s) 416
Sse9I AATT 5 cut(s) 332, 466, 496, 552, 594
SseBI AGGCCT 1 cut(s) 487
SsiI CCGC 1 cut(s) 281
SspDI GGCGCC 1 cut(s) 268
SspI AATATT 1 cut(s) 13
SspMI CTAG 3 cut(s) 69, 108, 417
SstI GAGCTC 1 cut(s) 8
StuI AGGCCT 1 cut(s) 487
StyD4I CCNGG 1 cut(s) 487
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 1 cut(s) 424
TaiI ACGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 233, 507
TasI AATT 5 cut(s) 332, 466, 496, 552, 594
TatI WGTACW 1 cut(s) 419
TauI GCSGC 1 cut(s) 283
Tru1I TTAA 5 cut(s) 78, 93, 438, 501, 585
Tru9I TTAA 5 cut(s) 78, 93, 438, 501, 585
TscAI CASTG 2 cut(s) 211, 453
TseI GCWGC 2 cut(s) 220, 320
TspDTI ATGAA 3 cut(s) 165, 555, 588
TspRI CASTG 2 cut(s) 211, 453
Van91I CCANNNNNTGG 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 305
XapI RAATTY 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 3 cut(s) 69, 108, 417
ZrmI AGTACT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.