Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004667

Physical Location & Seq

Genomic Coordinates Reverse (-)

28192339 .. 28195427

Gene Structure 3089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1204300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAAGAAGCTGTTTGGGAGCCCAGGGAAGGTGAGTGGGCTGGCACTGAGAATTGGGCAGTGCTGTTTTGCTGCCGCTGCTATTGGGGTGATGCTTTCTGCTCATGGATTCTTCAATGCCACTGCATTTTGCTATTTAATTGCATCAATGGGGCTTCAAGTTGTTTGGAGTTTTGGACTTGCTTGCCTTGATTTACATGCTTTGAGGTCAAAGAGAAGCTTGCAGAATCCCATTTTAGTGAGCCTATTTGTTGTTGGGGATTGGGTGACGTCTACTCTGTCATTAGCCGCTGCATGCTCATCAGCGGGGGTGACAGTTCTGTACTCGAGAGATTTGAATTACTGCAGCAGGCCAATTCATCTTCCATGCAGCAGGTTCCAAATTGCCGTTGCCTTTGCTTTCATCTCATGGTTCCTCCTTGCTGTTTCGTCCATTGTCATGTTTCGGTTGTTAGGCGCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

155

Amino Acids

16.49

Weight (kDa)

9.5

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	7 - 139	1.3e-26	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53850 AT3G53850 AT3G53850 AT5G02060
fragaria_vesca	FvH4_6g13050 FvH4_7g23400
malus_domestica	MD01G1140000.v1.1 MD04G1136000.v1.1 MD07G1204300.v1.1
prunus_persica	Prupe.2G240600_v2.0.a1
pyrus_communis	pycom01g16050 pycom04g12300 pycom07g19090
rosa_chinensis	RchiOBHm_Chr1g0368521 RchiOBHm_Chr3g0465321
rosa_laevigata	RLG00000024647 RLG00000027206
rosa_multiflora	Rmu_sc0005190.1_g000007 Rmu_sc0006908.1_g000001 Rmu_sc0011394.1_g000009
rosa_roxburghii	Rroxscaffold_4G00288470 Rroxscaffold_6G00415130
rosa_rugosa	Rorug01G0342600 Rorug03G0076200
rosa_samantha	Rh1BG313100 Rh1CG327800 Rh1DG344500 Rh3BG140900 Rh3CG141900 Rh3DG142000
rosa_wichuraiana	Rw3G011530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	272
AciI	CCGC	3 cut(s)	75, 288, 305
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	3 cut(s)	115, 158, 337
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	2 cut(s)	10, 219
AluI	AGCT	2 cut(s)	10, 219
Ama87I	CYCGRG	1 cut(s)	325
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	5 cut(s)	71, 77, 290, 345, 369
AspLEI	GCGC	1 cut(s)	458
AsuHPI	GGTGA	4 cut(s)	43, 100, 277, 322
AvaI	CYCGRG	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	23
BbvI	GCAGC	5 cut(s)	58, 64, 277, 357, 381
BceAI	ACGGC	1 cut(s)	371
BciT130I	CCWGG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	343
BfuAI	ACCTGC	1 cut(s)	363
BisI	GCNGC	7 cut(s)	72, 75, 78, 288, 291, 346, 370
BlsI	GCNGC	7 cut(s)	73, 76, 79, 289, 292, 347, 371
Bme1390I	CCNGG	1 cut(s)	24
BmeT110I	CYCGRG	1 cut(s)	325
BmiI	GGNNCC	3 cut(s)	20, 377, 413
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	2 cut(s)	81, 152
BsaHI	GRCGYC	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	22, 23
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	22, 23
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	38
BseXI	GCAGC	5 cut(s)	58, 64, 277, 357, 381
BshFI	GGCC	1 cut(s)	352
BsiHKCI	CYCGRG	1 cut(s)	325
BslI	CCNNNNNNNGG	1 cut(s)	28
BsnI	GGCC	1 cut(s)	352
BsoBI	CYCGRG	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	23
BspACI	CCGC	3 cut(s)	75, 288, 305
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	3 cut(s)	20, 377, 413
BspMAI	CTGCAG	1 cut(s)	347
BspMI	ACCTGC	1 cut(s)	363
BssECI	CCNNGG	2 cut(s)	22, 23
BssNI	GRCGYC	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	316
BstACI	GRCGYC	1 cut(s)	269
BstC8I	GCNNGC	5 cut(s)	42, 184, 221, 295, 350
BstDEI	CTNAG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	458
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	2 cut(s)	200, 297
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	343
BstV1I	GCAGC	5 cut(s)	58, 64, 277, 357, 381
BsuRI	GGCC	1 cut(s)	352
BtsI	GCAGTG	2 cut(s)	65, 120
BtsIMutI	CAGTG	3 cut(s)	44, 65, 120
BveI	ACCTGC	1 cut(s)	363
Cac8I	GCNNGC	5 cut(s)	42, 184, 221, 295, 350
CfoI	GCGC	1 cut(s)	458
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	6 cut(s)	104, 197, 294, 366, 408, 439
CviJI	RGCY	8 cut(s)	10, 21, 40, 154, 219, 243, 287, 352
CviKI_1	RGCY	8 cut(s)	10, 21, 40, 154, 219, 243, 287, 352
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	23
Eco88I	CYCGRG	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	23
FaeI	CATG	6 cut(s)	107, 200, 297, 369, 411, 442
FaiI	YATR	6 cut(s)	105, 198, 295, 367, 409, 440
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FatI	CATG	6 cut(s)	103, 196, 293, 365, 407, 438
FauI	CCCGC	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	272
Fnu4HI	GCNGC	7 cut(s)	72, 75, 78, 288, 291, 346, 370
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	7 cut(s)	72, 75, 78, 288, 291, 346, 370
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	7 cut(s)	72, 75, 78, 288, 291, 346, 370
HaeIII	GGCC	1 cut(s)	352
HhaI	GCGC	1 cut(s)	458
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	6 cut(s)	107, 200, 297, 369, 411, 442
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HindIII	AAGCTT	1 cut(s)	217
HinfI	GANTC	2 cut(s)	108, 226
HphI	GGTGA	4 cut(s)	43, 100, 277, 322
Hpy166II	GTNNAC	1 cut(s)	273
Hpy188I	TCNGA	1 cut(s)	464
Hpy188III	TCNNGA	1 cut(s)	327
Hpy8I	GTNNAC	1 cut(s)	273
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	6 cut(s)	125, 143, 223, 293, 345, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	269
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	6 cut(s)	107, 200, 297, 369, 411, 442
HspAI	GCGC	1 cut(s)	456
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	5 cut(s)	9, 26, 36, 334, 358
Lsp1109I	GCAGC	5 cut(s)	58, 64, 277, 357, 381
LweI	GCATC	2 cut(s)	81, 152
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	2 cut(s)	265, 310
MboII	GAAGA	3 cut(s)	16, 103, 353
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	5 cut(s)	51, 138, 337, 354, 381
MnlI	CCTC	2 cut(s)	198, 425
MseI	TTAA	1 cut(s)	137
MslI	CAYNNNNRTG	2 cut(s)	236, 437
MspA1I	CMGCKG	3 cut(s)	77, 290, 305
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	77
NlaIII	CATG	6 cut(s)	107, 200, 297, 369, 411, 442
NlaIV	GGNNCC	3 cut(s)	20, 377, 413
NmuCI	GTSAC	2 cut(s)	265, 310
NspI	RCATGY	2 cut(s)	200, 297
PaeI	GCATGC	1 cut(s)	297
PaeR7I	CTCGAG	1 cut(s)	325
PasI	CCCWGGG	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	108, 226
PkrI	GCNGC	7 cut(s)	73, 76, 79, 289, 292, 347, 371
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	3 cut(s)	20, 377, 413
PstI	CTGCAG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	2 cut(s)	236, 437
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	7 cut(s)	72, 75, 78, 288, 291, 346, 370
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	6 cut(s)	12, 33, 209, 221, 272, 377
SfaNI	GCATC	2 cut(s)	81, 152
SfcI	CTRYAG	1 cut(s)	343
Sfr274I	CTCGAG	1 cut(s)	325
SlaI	CTCGAG	1 cut(s)	325
SmiMI	CAYNNNNRTG	2 cut(s)	236, 437
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
SphI	GCATGC	1 cut(s)	297
Sse9I	AATT	5 cut(s)	51, 138, 337, 354, 381
SsiI	CCGC	3 cut(s)	75, 288, 305
StyD4I	CCNGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	1 cut(s)	326
TasI	AATT	5 cut(s)	51, 138, 337, 354, 381
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	2 cut(s)	77, 290
TfiI	GAWTC	2 cut(s)	108, 226
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	3 cut(s)	51, 65, 127
TseFI	GTSAC	2 cut(s)	265, 310
TseI	GCWGC	5 cut(s)	71, 77, 290, 345, 369
Tsp45I	GTSAC	2 cut(s)	265, 310
TspDTI	ATGAA	3 cut(s)	17, 347, 391
TspRI	CASTG	3 cut(s)	51, 65, 127
XceI	RCATGY	2 cut(s)	200, 297
XhoI	CTCGAG	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	272
ZraI	GACGTC	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.