Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005190.1

Orthogroup ID

OG0004667

Physical Location & Seq

Genomic Coordinates Forward (+)

28877 .. 31216

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005190.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgaaggagctgataggtagaccagggtcggttagtgggttactccttagaatcggccaatttgggtttgctgctgccgccatcggagtcatggtctccgccgatcgcttcgccacattcaccgccttctgctatttgattgcgtcaatggggcttcaagtgctatggagctttggccttgcttgtcttgatatttatgctttgaggagaaagagagacctccaaaatccaatcctagttagcctatttgttgttggtgattgggtaacagctactctatcactggctgctgcaagcgcttcagcaggaatagtaattctttatgcaaaagacacaaatttctgcacgtcacaatgggatataccatgccggaagttccagatttcagtggcttttgctttccttacctgggccttcattgccgtatcttctcatgtgatgttttggatcctattagcttcagtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

155

Amino Acids

16.87

Weight (kDa)

9.1

Isoelectric Point (pI)

30.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53850 AT3G53850 AT3G53850 AT5G02060
fragaria_vesca	FvH4_6g13050 FvH4_7g23400
malus_domestica	MD01G1140000.v1.1 MD04G1136000.v1.1 MD07G1204300.v1.1
prunus_persica	Prupe.2G240600_v2.0.a1
pyrus_communis	pycom01g16050 pycom04g12300 pycom07g19090
rosa_chinensis	RchiOBHm_Chr1g0368521 RchiOBHm_Chr3g0465321
rosa_laevigata	RLG00000024647 RLG00000027206
rosa_multiflora	Rmu_sc0005190.1_g000007 Rmu_sc0006908.1_g000001 Rmu_sc0011394.1_g000009
rosa_roxburghii	Rroxscaffold_4G00288470 Rroxscaffold_6G00415130
rosa_rugosa	Rorug01G0342600 Rorug03G0076200
rosa_samantha	Rh1BG313100 Rh1CG327800 Rh1DG344500 Rh3BG140900 Rh3CG141900 Rh3DG142000
rosa_wichuraiana	Rw3G011530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	19
AciI	CCGC	3 cut(s)	78, 99, 123
AclWI	GGATC	2 cut(s)	442, 455
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	2 cut(s)	285, 444
AfeI	AGCGCT	1 cut(s)	298
AfiI	CCNNNNNNNGG	1 cut(s)	409
AgsI	TTSAA	1 cut(s)	158
AjiI	CACGTC	1 cut(s)	348
AjnI	CCWGG	2 cut(s)	22, 407
AluBI	AGCT	4 cut(s)	10, 171, 272, 458
AluI	AGCT	4 cut(s)	10, 171, 272, 458
Alw26I	GTCTC	2 cut(s)	100, 210
AlwI	GGATC	2 cut(s)	442, 455
Aor51HI	AGCGCT	1 cut(s)	298
AoxI	GGCC	3 cut(s)	55, 175, 411
ApeKI	GCWGC	4 cut(s)	71, 74, 287, 290
ApoI	RAATTY	1 cut(s)	337
AspLEI	GCGC	1 cut(s)	299
AspS9I	GGNCC	1 cut(s)	411
AsuHPI	GGTGA	2 cut(s)	112, 269
BamHI	GGATCC	1 cut(s)	447
BbvI	GCAGC	4 cut(s)	58, 61, 274, 277
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	407
BciT130I	CCWGG	2 cut(s)	24, 409
BcoDI	GTCTC	2 cut(s)	100, 210
BfaI	CTAG	1 cut(s)	236
BfoI	RGCGCY	1 cut(s)	300
BisI	GCNGC	5 cut(s)	72, 75, 78, 288, 291
BlsI	GCNGC	5 cut(s)	73, 76, 79, 289, 292
Bme1390I	CCNGG	2 cut(s)	24, 409
BmgBI	CACGTC	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	1 cut(s)	449
BmrFI	CCNGG	2 cut(s)	24, 409
BoxI	GACNNNNGTC	1 cut(s)	25
BsaI	GGTCTC	2 cut(s)	100, 210
BsaJI	CCNNGG	2 cut(s)	23, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse1I	ACTGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	417
BseBI	CCWGG	2 cut(s)	24, 409
BseDI	CCNNGG	2 cut(s)	23, 408
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMI	GCAATG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	220
BseXI	GCAGC	4 cut(s)	58, 61, 274, 277
BsgI	GTGCAG	1 cut(s)	328
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	3 cut(s)	57, 177, 413
BsiEI	CGRYCG	1 cut(s)	106
BsiSI	CCGG	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	2 cut(s)	100, 210
BsnI	GGCC	3 cut(s)	57, 177, 413
Bso31I	GGTCTC	2 cut(s)	100, 210
Bsp143I	GATC	2 cut(s)	103, 447
BspACI	CCGC	3 cut(s)	78, 99, 123
BspANI	GGCC	3 cut(s)	57, 177, 413
BspLI	GGNNCC	1 cut(s)	449
BspPI	GGATC	2 cut(s)	442, 455
BspTNI	GGTCTC	2 cut(s)	100, 210
BsrDI	GCAATG	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	23, 408
BssMI	GATC	2 cut(s)	103, 447
Bst2UI	CCWGG	2 cut(s)	24, 409
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	47
BstH2I	RGCGCY	1 cut(s)	300
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	2 cut(s)	106, 450
BstMAI	GTCTC	2 cut(s)	100, 210
BstMBI	GATC	2 cut(s)	103, 447
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 160, 296, 419
BstNI	CCWGG	2 cut(s)	24, 409
BstPAI	GACNNNNGTC	1 cut(s)	25
BstSCI	CCNGG	2 cut(s)	22, 407
BstV1I	GCAGC	4 cut(s)	58, 61, 274, 277
BstX2I	RGATCY	1 cut(s)	447
BstYI	RGATCY	1 cut(s)	447
BsuRI	GGCC	3 cut(s)	57, 177, 413
BtrI	CACGTC	1 cut(s)	348
BtsIMutI	CAGTG	2 cut(s)	281, 393
Cac8I	GCNNGC	1 cut(s)	295
CfoI	GCGC	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	411
CseI	GACGC	1 cut(s)	132
CviAII	CATG	3 cut(s)	91, 366, 434
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	2 cut(s)	105, 449
DpnII	GATC	2 cut(s)	103, 447
EaeI	YGGCCR	1 cut(s)	55
EciI	GGCGGA	1 cut(s)	88
Eco31I	GGTCTC	2 cut(s)	100, 210
Eco47III	AGCGCT	1 cut(s)	298
Eco57I	CTGAAG	2 cut(s)	285, 444
EcoRII	CCWGG	2 cut(s)	22, 407
FaeI	CATG	3 cut(s)	94, 369, 437
FaiI	YATR	7 cut(s)	92, 166, 198, 324, 362, 367, 435
FatI	CATG	3 cut(s)	90, 365, 433
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	5 cut(s)	72, 75, 78, 288, 291
Fsp4HI	GCNGC	5 cut(s)	72, 75, 78, 288, 291
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	5 cut(s)	72, 75, 78, 288, 291
HaeII	RGCGCY	1 cut(s)	300
HaeIII	GGCC	3 cut(s)	57, 177, 413
HapII	CCGG	1 cut(s)	370
HgaI	GACGC	1 cut(s)	132
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	3 cut(s)	94, 369, 437
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HinfI	GANTC	2 cut(s)	51, 87
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	2 cut(s)	112, 269
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	2 cut(s)	188, 379
Hpy8I	GTNNAC	1 cut(s)	20
HpyAV	CCTTC	2 cut(s)	136, 424
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	3 cut(s)	293, 326, 345
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 160, 296, 419
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	347
Hsp92II	CATG	3 cut(s)	94, 369, 437
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	2 cut(s)	103, 447
LmnI	GCTCC	2 cut(s)	7, 168
LpnPI	CCDG	8 cut(s)	9, 36, 269, 291, 383, 392, 394, 421
Lsp1109I	GCAGC	4 cut(s)	58, 61, 274, 277
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	3 cut(s)	39, 265, 348
MalI	GATC	2 cut(s)	105, 449
MboI	GATC	2 cut(s)	103, 447
MboII	GAAGA	1 cut(s)	420
MflI	RGATCY	1 cut(s)	447
MluCI	AATT	3 cut(s)	59, 315, 337
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	2 cut(s)	198, 230
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	2 cut(s)	24, 409
MvaI	CCWGG	2 cut(s)	24, 409
MwoI	GCNNNNNNNGC	4 cut(s)	77, 160, 296, 419
NdeII	GATC	2 cut(s)	103, 447
NlaIII	CATG	3 cut(s)	94, 369, 437
NlaIV	GGNNCC	1 cut(s)	449
NmuCI	GTSAC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	51
PkrI	GCNGC	5 cut(s)	73, 76, 79, 289, 292
Ple19I	CGATCG	1 cut(s)	106
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
PshAI	GACNNNNGTC	1 cut(s)	25
Psp6I	CCWGG	2 cut(s)	22, 407
PspGI	CCWGG	2 cut(s)	22, 407
PspN4I	GGNNCC	1 cut(s)	449
PspPI	GGNCC	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	447
PvuI	CGATCG	1 cut(s)	106
SatI	GCNGC	5 cut(s)	72, 75, 78, 288, 291
Sau3AI	GATC	2 cut(s)	103, 447
Sau96I	GGNCC	1 cut(s)	411
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	2 cut(s)	24, 409
SetI	ASST	8 cut(s)	12, 19, 173, 222, 274, 350, 410, 460
Sse9I	AATT	3 cut(s)	59, 315, 337
SsiI	CCGC	3 cut(s)	78, 99, 123
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	22, 407
TaiI	ACGT	1 cut(s)	350
TasI	AATT	3 cut(s)	59, 315, 337
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	51
TscAI	CASTG	2 cut(s)	288, 393
TseFI	GTSAC	1 cut(s)	348
TseI	GCWGC	4 cut(s)	71, 74, 287, 290
Tsp45I	GTSAC	1 cut(s)	348
TspDTI	ATGAA	2 cut(s)	17, 406
TspRI	CASTG	2 cut(s)	288, 393
XapI	RAATTY	1 cut(s)	337
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XmiI	GTMKAC	1 cut(s)	19
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.