Rh3CG141900

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0004667
Physical Location & Seq
Forward (+)
11783091 .. 11786740
3650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG141900.1

Sequence Viewer

Length: 363 bp
ATGTTAATCTCTGTCCTCTGGTTCAGCTATTTGATTGCGTCAATGGGGCTTCAAGTGCTATGGAGCTTTGGCCTTGCTTGTCTTGATATTTATGCTTTGAGGAGAAAGAGAGACCTCCAAAATCCAATCCTAGTTAGCCTATTTGTTGTCGGTGATTGGGTAACAGCTACTCTATCACTGGCTGCTGCAAGTGCTTCAGCAGGAATAGTAATTCTTTATGCAAAAGACACAAATTTCTGCACGTCACAATGGGATATACCATGCCGGAAGTTCCAGATTTCAGTGGCTTTTGCTTTCCTTACCTGGGCCTTCATTGCCGTATCTTCTCATGTGATGTTTTGGATCCTATTAGCTTCAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

120

Amino Acids

13.39

Weight (kDa)

8.57

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 8 - 104 4.4e-20 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 337, 350
AcsI RAATTY 1 cut(s) 232
AcuI CTGAAG 2 cut(s) 180, 339
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 1 cut(s) 53
AjiI CACGTC 1 cut(s) 243
AjnI CCWGG 1 cut(s) 302
AluBI AGCT 4 cut(s) 27, 66, 167, 353
AluI AGCT 4 cut(s) 27, 66, 167, 353
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 2 cut(s) 337, 350
AoxI GGCC 2 cut(s) 70, 306
ApeKI GCWGC 2 cut(s) 182, 185
ApoI RAATTY 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 164
BamHI GGATCC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 169, 172
BceAI ACGGC 1 cut(s) 302
BciT130I CCWGG 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 1 cut(s) 131
BisI GCNGC 2 cut(s) 183, 186
BlsI GCNGC 2 cut(s) 184, 187
Bme1390I CCNGG 1 cut(s) 304
BmgBI CACGTC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 306
BmiI GGNNCC 1 cut(s) 344
BmrFI CCNGG 1 cut(s) 304
BsaI GGTCTC 1 cut(s) 105
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMI GCAATG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 2 cut(s) 169, 172
BsgI GTGCAG 1 cut(s) 223
BshFI GGCC 2 cut(s) 72, 308
BsiSI CCGG 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 105
BsnI GGCC 2 cut(s) 72, 308
Bso31I GGTCTC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 342
BspANI GGCC 2 cut(s) 72, 308
BspLI GGNNCC 1 cut(s) 344
BspPI GGATC 2 cut(s) 337, 350
BspTNI GGTCTC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 312
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 304
BstKTI GATC 1 cut(s) 345
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 1 cut(s) 342
BstMWI GCNNNNNNNGC 3 cut(s) 55, 191, 314
BstNI CCWGG 1 cut(s) 304
BstSCI CCNGG 1 cut(s) 302
BstV1I GCAGC 2 cut(s) 169, 172
BstX2I RGATCY 1 cut(s) 342
BstYI RGATCY 1 cut(s) 342
BsuRI GGCC 2 cut(s) 72, 308
BtrI CACGTC 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 176, 288
Cfr13I GGNCC 1 cut(s) 306
CseI GACGC 1 cut(s) 27
CviAII CATG 2 cut(s) 261, 329
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 105
Eco57I CTGAAG 2 cut(s) 180, 339
EcoRII CCWGG 1 cut(s) 302
FaeI CATG 2 cut(s) 264, 332
FaiI YATR 6 cut(s) 61, 93, 219, 257, 262, 330
FatI CATG 2 cut(s) 260, 328
Fnu4HI GCNGC 2 cut(s) 183, 186
Fsp4HI GCNGC 2 cut(s) 183, 186
FspBI CTAG 1 cut(s) 131
GluI GCNGC 2 cut(s) 183, 186
HaeIII GGCC 2 cut(s) 72, 308
HapII CCGG 1 cut(s) 265
HgaI GACGC 1 cut(s) 27
Hin1II CATG 2 cut(s) 264, 332
HpaII CCGG 1 cut(s) 265
HphI GGTGA 1 cut(s) 164
Hpy188III TCNNGA 2 cut(s) 83, 274
HpyAV CCTTC 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 3 cut(s) 188, 221, 240
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 191, 314
HpySE526I ACGT 1 cut(s) 242
Hsp92II CATG 2 cut(s) 264, 332
Kzo9I GATC 1 cut(s) 342
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 7 cut(s) 4, 164, 186, 278, 287, 289, 316
Lsp1109I GCAGC 2 cut(s) 169, 172
MaeI CTAG 1 cut(s) 131
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 2 cut(s) 160, 243
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MboII GAAGA 1 cut(s) 315
MflI RGATCY 1 cut(s) 342
MluCI AATT 2 cut(s) 210, 232
MnlI CCTC 3 cut(s) 26, 93, 125
MseI TTAA 1 cut(s) 5
MspI CCGG 1 cut(s) 265
MspR9I CCNGG 1 cut(s) 304
MvaI CCWGG 1 cut(s) 304
MwoI GCNNNNNNNGC 3 cut(s) 55, 191, 314
NdeII GATC 1 cut(s) 342
NlaIII CATG 2 cut(s) 264, 332
NlaIV GGNNCC 1 cut(s) 344
NmuCI GTSAC 1 cut(s) 243
PkrI GCNGC 2 cut(s) 184, 187
Psp6I CCWGG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 344
PspPI GGNCC 1 cut(s) 306
PsuI RGATCY 1 cut(s) 342
SaqAI TTAA 1 cut(s) 5
SatI GCNGC 2 cut(s) 183, 186
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 1 cut(s) 306
ScrFI CCNGG 1 cut(s) 304
SetI ASST 7 cut(s) 29, 68, 117, 169, 245, 305, 355
Sse9I AATT 2 cut(s) 210, 232
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 302
TaiI ACGT 1 cut(s) 245
TasI AATT 2 cut(s) 210, 232
Tru1I TTAA 1 cut(s) 5
Tru9I TTAA 1 cut(s) 5
TscAI CASTG 2 cut(s) 183, 288
TseFI GTSAC 1 cut(s) 243
TseI GCWGC 2 cut(s) 182, 185
Tsp45I GTSAC 1 cut(s) 243
TspDTI ATGAA 1 cut(s) 301
TspRI CASTG 2 cut(s) 183, 288
XapI RAATTY 1 cut(s) 232
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.