Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004667

Physical Location & Seq

Genomic Coordinates Reverse (-)

15759005 .. 15761451

Gene Structure 2447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAAGAAGCTGTTTGGGAGCCCAGGGAAGGTGAGTGGGCTGGCACTGAGAATTGGGCAGTGCTGTTTTGCTGCTGCTGCTATTGGGGTGATGCTCTCTGCTCATGGTTTCTTCAATGCCACTGCATTTTGTTATTTGATTGCATCAATGGGGCTTCAAGTTGTTTGGAGTTTTGGACTTGCTTGCCTTGATTTACATGCTTTGAGGTCAAAGAGAAGCTTGCAGAATCCTATTTTAGTGAGCCTATTTGTTGTCGGGGATTGGGTGACGTCTACTCTGTCATTGGCAGCTGCATGCTCATCAGCGGGGGTGACAGTTCTGTACTCAAAAGATTTGAATTACTGCAGGCCAATGCATCTTCCGTGCAGCAAGTTCCAAATCGCGGTTGCCTTCGCCTTCATCTCATGGTTCCTCCTTGCTGTTTCGTCCATTGTCATGTTTCGGTTGTTAGGCGCGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

154

Amino Acids

16.36

Weight (kDa)

9.43

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53850 AT3G53850 AT3G53850 AT5G02060
fragaria_vesca	FvH4_6g13050 FvH4_7g23400
malus_domestica	MD01G1140000.v1.1 MD04G1136000.v1.1 MD07G1204300.v1.1
prunus_persica	Prupe.2G240600_v2.0.a1
pyrus_communis	pycom01g16050 pycom04g12300 pycom07g19090
rosa_chinensis	RchiOBHm_Chr1g0368521 RchiOBHm_Chr3g0465321
rosa_laevigata	RLG00000024647 RLG00000027206
rosa_multiflora	Rmu_sc0005190.1_g000007 Rmu_sc0006908.1_g000001 Rmu_sc0011394.1_g000009
rosa_roxburghii	Rroxscaffold_4G00288470 Rroxscaffold_6G00415130
rosa_rugosa	Rorug01G0342600 Rorug03G0076200
rosa_samantha	Rh1BG313100 Rh1CG327800 Rh1DG344500 Rh3BG140900 Rh3CG141900 Rh3DG142000
rosa_wichuraiana	Rw3G011530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	272
AccII	CGCG	2 cut(s)	383, 455
AciI	CCGC	3 cut(s)	305, 383, 455
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	28, 382
AgsI	TTSAA	3 cut(s)	115, 158, 337
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	3 cut(s)	10, 219, 290
AluI	AGCT	3 cut(s)	10, 219, 290
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	6 cut(s)	71, 74, 77, 287, 290, 366
AspLEI	GCGC	1 cut(s)	455
AsuHPI	GGTGA	4 cut(s)	43, 100, 277, 322
BanII	GRGCYC	1 cut(s)	23
BbvI	GCAGC	6 cut(s)	58, 61, 64, 277, 299, 378
BciT130I	CCWGG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	343
BisI	GCNGC	6 cut(s)	72, 75, 78, 288, 291, 367
BlsI	GCNGC	6 cut(s)	73, 76, 79, 289, 292, 368
Bme1390I	CCNGG	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	20, 410
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	3 cut(s)	81, 152, 364
BsaHI	GRCGYC	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	22, 23
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 382
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	22, 23
BseLI	CCNNNNNNNGG	2 cut(s)	28, 382
BseMII	CTCAG	1 cut(s)	38
BseXI	GCAGC	6 cut(s)	58, 61, 64, 277, 299, 378
BsgI	GTGCAG	1 cut(s)	385
Bsh1236I	CGCG	2 cut(s)	383, 455
BshFI	GGCC	1 cut(s)	349
BslI	CCNNNNNNNGG	2 cut(s)	28, 382
BsnI	GGCC	1 cut(s)	349
Bsp1286I	GDGCHC	1 cut(s)	23
BspACI	CCGC	3 cut(s)	305, 383, 455
BspANI	GGCC	1 cut(s)	349
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	2 cut(s)	383, 455
BspLI	GGNNCC	2 cut(s)	20, 410
BspMAI	CTGCAG	1 cut(s)	347
BssECI	CCNNGG	2 cut(s)	22, 23
BssNI	GRCGYC	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	316
BstACI	GRCGYC	1 cut(s)	269
BstC8I	GCNNGC	5 cut(s)	42, 184, 221, 295, 347
BstDEI	CTNAG	1 cut(s)	47
BstFNI	CGCG	2 cut(s)	383, 455
BstHHI	GCGC	1 cut(s)	455
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	2 cut(s)	200, 297
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	343
BstUI	CGCG	2 cut(s)	383, 455
BstV1I	GCAGC	6 cut(s)	58, 61, 64, 277, 299, 378
BsuRI	GGCC	1 cut(s)	349
BtsI	GCAGTG	2 cut(s)	65, 120
BtsIMutI	CAGTG	3 cut(s)	44, 65, 120
Cac8I	GCNNGC	5 cut(s)	42, 184, 221, 295, 347
CfoI	GCGC	1 cut(s)	455
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	5 cut(s)	104, 197, 294, 405, 436
CviJI	RGCY	8 cut(s)	10, 21, 40, 154, 219, 243, 290, 349
CviKI_1	RGCY	8 cut(s)	10, 21, 40, 154, 219, 243, 290, 349
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	23
FaeI	CATG	5 cut(s)	107, 200, 297, 408, 439
FaiI	YATR	6 cut(s)	105, 198, 295, 406, 437, 460
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FatI	CATG	5 cut(s)	103, 196, 293, 404, 435
FauI	CCCGC	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	272
Fnu4HI	GCNGC	6 cut(s)	72, 75, 78, 288, 291, 367
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	6 cut(s)	72, 75, 78, 288, 291, 367
GlaI	GCGC	1 cut(s)	454
GluI	GCNGC	6 cut(s)	72, 75, 78, 288, 291, 367
HaeIII	GGCC	1 cut(s)	349
HhaI	GCGC	1 cut(s)	455
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	5 cut(s)	107, 200, 297, 408, 439
Hin6I	GCGC	1 cut(s)	453
HinP1I	GCGC	1 cut(s)	453
HindIII	AAGCTT	1 cut(s)	217
HinfI	GANTC	1 cut(s)	226
HphI	GGTGA	4 cut(s)	43, 100, 277, 322
Hpy166II	GTNNAC	1 cut(s)	273
Hpy8I	GTNNAC	1 cut(s)	273
HpyAV	CCTTC	3 cut(s)	22, 400, 406
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	7 cut(s)	125, 143, 223, 293, 345, 355, 366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	269
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	5 cut(s)	107, 200, 297, 408, 439
HspAI	GCGC	1 cut(s)	453
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	4 cut(s)	9, 26, 36, 331
Lsp1109I	GCAGC	6 cut(s)	58, 61, 64, 277, 299, 378
LweI	GCATC	3 cut(s)	81, 152, 364
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	2 cut(s)	265, 310
MboII	GAAGA	3 cut(s)	16, 103, 350
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	2 cut(s)	51, 337
MnlI	CCTC	2 cut(s)	198, 422
Mph1103I	ATGCAT	1 cut(s)	357
MslI	CAYNNNNRTG	1 cut(s)	434
MspA1I	CMGCKG	2 cut(s)	290, 305
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
MvnI	CGCG	2 cut(s)	383, 455
MwoI	GCNNNNNNNGC	1 cut(s)	77
NlaIII	CATG	5 cut(s)	107, 200, 297, 408, 439
NlaIV	GGNNCC	2 cut(s)	20, 410
NmuCI	GTSAC	2 cut(s)	265, 310
NsiI	ATGCAT	1 cut(s)	357
NspI	RCATGY	2 cut(s)	200, 297
PaeI	GCATGC	1 cut(s)	297
PasI	CCCWGGG	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	6 cut(s)	73, 76, 79, 289, 292, 368
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	20, 410
PstI	CTGCAG	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	434
SatI	GCNGC	6 cut(s)	72, 75, 78, 288, 291, 367
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	6 cut(s)	12, 33, 209, 221, 272, 292
SfaNI	GCATC	3 cut(s)	81, 152, 364
SfcI	CTRYAG	1 cut(s)	343
SmiMI	CAYNNNNRTG	1 cut(s)	434
SphI	GCATGC	1 cut(s)	297
Sse9I	AATT	2 cut(s)	51, 337
SsiI	CCGC	3 cut(s)	305, 383, 455
StyD4I	CCNGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	1 cut(s)	272
TasI	AATT	2 cut(s)	51, 337
TatI	WGTACW	1 cut(s)	321
TfiI	GAWTC	1 cut(s)	226
TscAI	CASTG	3 cut(s)	51, 65, 127
TseFI	GTSAC	2 cut(s)	265, 310
TseI	GCWGC	6 cut(s)	71, 74, 77, 287, 290, 366
Tsp45I	GTSAC	2 cut(s)	265, 310
TspDTI	ATGAA	2 cut(s)	17, 388
TspGWI	ACGGA	1 cut(s)	351
TspRI	CASTG	3 cut(s)	51, 65, 127
XceI	RCATGY	2 cut(s)	200, 297
XmiI	GTMKAC	1 cut(s)	272
ZraI	GACGTC	1 cut(s)	270
Zsp2I	ATGCAT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.