Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004667

Physical Location & Seq

Genomic Coordinates Reverse (-)

26033405 .. 26036385

Gene Structure 2981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G240600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAAGGAGGTCTTTGGGAGTCCAGGGAAGGTGAGTGGGCTGGCACTGAGAATTGGGCAGTGCTCTTTTGCTGCTGCTTCTATTGGAGTGATGGTCTCTGCCCATGGCTTCTTCAACTCCACTGCATTTTGCTATTTAATTGCATCAATGGGGCTTCAAGTTCTTTGGAGTTTGGGACTTGCTTGCCTTGATTTGCATGCTTTGAGGTCAAAGAGAAGCTTGCAGAATCCTGTTTTAGTAAGCCTATTTGTTGTTGGGGATTGGGTGACAGCTATTCTGTCGTTGGCCGCTGCATGCTCATCAGCTGGAGTGACAGTTCTGTATTCGAGAGATTTGAATTACTGCGGGCCACCGGCACAACTTCCATGCAGCAGGTTCCAAATTGCTGTTGCTTTCGCTTTTATCTCATGGTTCCTCCTTGCTGTTTCGTCCATTGTCATGTTTTGGTTGCTAGGTGCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

155

Amino Acids

16.33

Weight (kDa)

8.88

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53850 AT3G53850 AT3G53850 AT5G02060
fragaria_vesca	FvH4_6g13050 FvH4_7g23400
malus_domestica	MD01G1140000.v1.1 MD04G1136000.v1.1 MD07G1204300.v1.1
prunus_persica	Prupe.2G240600_v2.0.a1
pyrus_communis	pycom01g16050 pycom04g12300 pycom07g19090
rosa_chinensis	RchiOBHm_Chr1g0368521 RchiOBHm_Chr3g0465321
rosa_laevigata	RLG00000024647 RLG00000027206
rosa_multiflora	Rmu_sc0005190.1_g000007 Rmu_sc0006908.1_g000001 Rmu_sc0011394.1_g000009
rosa_roxburghii	Rroxscaffold_4G00288470 Rroxscaffold_6G00415130
rosa_rugosa	Rorug01G0342600 Rorug03G0076200
rosa_samantha	Rh1BG313100 Rh1CG327800 Rh1DG344500 Rh3BG140900 Rh3CG141900 Rh3DG142000
rosa_wichuraiana	Rw3G011530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	363
AciI	CCGC	2 cut(s)	288, 345
AcoI	YGGCCR	1 cut(s)	285
AgsI	TTSAA	3 cut(s)	115, 158, 337
AjnI	CCWGG	1 cut(s)	22
AloI	GAACNNNNNNTCC	2 cut(s)	300, 332
AluBI	AGCT	3 cut(s)	219, 272, 305
AluI	AGCT	3 cut(s)	219, 272, 305
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	100
AoxI	GGCC	2 cut(s)	285, 347
ApeKI	GCWGC	4 cut(s)	71, 74, 290, 369
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	2 cut(s)	43, 277
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	4 cut(s)	58, 61, 277, 381
BccI	CCATC	1 cut(s)	85
BciT130I	CCWGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	452
BfuAI	ACCTGC	1 cut(s)	363
BisI	GCNGC	5 cut(s)	72, 75, 288, 291, 370
BlsI	GCNGC	5 cut(s)	73, 76, 289, 292, 371
Bme1390I	CCNGG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	347
BmiI	GGNNCC	2 cut(s)	377, 413
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	23, 103
BsaXI	ACNNNNNCTCC	4 cut(s)	78, 108, 300, 330
Bse118I	RCCGGY	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	23, 103
BseMII	CTCAG	1 cut(s)	38
BseXI	GCAGC	4 cut(s)	58, 61, 277, 381
BshFI	GGCC	2 cut(s)	287, 349
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	353
BslFI	GGGAC	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	287, 349
Bso31I	GGTCTC	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp19I	CCATGG	1 cut(s)	103
BspACI	CCGC	2 cut(s)	288, 345
BspANI	GGCC	2 cut(s)	287, 349
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	377, 413
BspMI	ACCTGC	1 cut(s)	363
BspTNI	GGTCTC	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	352
BssAI	RCCGGY	1 cut(s)	352
BssECI	CCNNGG	2 cut(s)	23, 103
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	316
BstC8I	GCNNGC	6 cut(s)	42, 184, 198, 221, 295, 347
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	100
BstNI	CCWGG	1 cut(s)	24
BstNSI	RCATGY	2 cut(s)	200, 297
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	4 cut(s)	58, 61, 277, 381
BsuRI	GGCC	2 cut(s)	287, 349
BtgI	CCRYGG	1 cut(s)	103
BtsI	GCAGTG	2 cut(s)	65, 120
BtsIMutI	CAGTG	3 cut(s)	44, 65, 120
BveI	ACCTGC	1 cut(s)	363
Cac8I	GCNNGC	6 cut(s)	42, 184, 198, 221, 295, 347
Cfr10I	RCCGGY	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	347
CviAII	CATG	6 cut(s)	104, 197, 294, 366, 408, 439
CviJI	RGCY	9 cut(s)	40, 108, 154, 219, 243, 272, 287, 305, 349
CviKI_1	RGCY	9 cut(s)	40, 108, 154, 219, 243, 272, 287, 305, 349
DdeI	CTNAG	1 cut(s)	47
EaeI	YGGCCR	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	6 cut(s)	107, 200, 297, 369, 411, 442
FaiI	YATR	7 cut(s)	105, 198, 295, 367, 409, 440, 463
FalI	AAGNNNNNCTT	3 cut(s)	28, 203, 235
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	6 cut(s)	103, 196, 293, 365, 407, 438
FauI	CCCGC	1 cut(s)	338
Fnu4HI	GCNGC	5 cut(s)	72, 75, 288, 291, 370
Fsp4HI	GCNGC	5 cut(s)	72, 75, 288, 291, 370
FspBI	CTAG	1 cut(s)	452
GluI	GCNGC	5 cut(s)	72, 75, 288, 291, 370
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	287, 349
HapII	CCGG	1 cut(s)	353
Hin1II	CATG	6 cut(s)	107, 200, 297, 369, 411, 442
HindIII	AAGCTT	1 cut(s)	217
HinfI	GANTC	2 cut(s)	19, 226
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	2 cut(s)	43, 277
Hpy188III	TCNNGA	1 cut(s)	327
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	7 cut(s)	125, 143, 196, 223, 293, 369, 458
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	6 cut(s)	107, 200, 297, 369, 411, 442
LpnPI	CCDG	7 cut(s)	9, 26, 36, 243, 291, 358, 366
Lsp1109I	GCAGC	4 cut(s)	58, 61, 277, 381
LweI	GCATC	1 cut(s)	152
MaeI	CTAG	1 cut(s)	452
MaeIII	GTNAC	2 cut(s)	265, 310
MboII	GAAGA	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	4 cut(s)	51, 138, 337, 381
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	2 cut(s)	198, 425
MseI	TTAA	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	437
MspA1I	CMGCKG	2 cut(s)	290, 305
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	24
MvaI	CCWGG	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	103
NlaIII	CATG	6 cut(s)	107, 200, 297, 369, 411, 442
NlaIV	GGNNCC	2 cut(s)	377, 413
NmuCI	GTSAC	2 cut(s)	265, 310
NspI	RCATGY	2 cut(s)	200, 297
PaeI	GCATGC	2 cut(s)	200, 297
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	5 cut(s)	73, 76, 289, 292, 371
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	2 cut(s)	377, 413
PspPI	GGNCC	1 cut(s)	347
PvuII	CAGCTG	1 cut(s)	305
RseI	CAYNNNNRTG	1 cut(s)	437
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	5 cut(s)	72, 75, 288, 291, 370
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	24
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	8 cut(s)	12, 33, 209, 221, 274, 307, 377, 457
SfaNI	GCATC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	437
SphI	GCATGC	2 cut(s)	200, 297
Sse9I	AATT	4 cut(s)	51, 138, 337, 381
SsiI	CCGC	2 cut(s)	288, 345
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	326
TasI	AATT	4 cut(s)	51, 138, 337, 381
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	3 cut(s)	51, 65, 127
TseFI	GTSAC	2 cut(s)	265, 310
TseI	GCWGC	4 cut(s)	71, 74, 290, 369
Tsp45I	GTSAC	2 cut(s)	265, 310
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	51, 65, 127
XceI	RCATGY	2 cut(s)	200, 297
XspI	CTAG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.