Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003625

Physical Location & Seq

Genomic Coordinates Forward (+)

32015513 .. 32025560

Gene Structure 10048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1252300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3156 bp

ATGGGTGACCCTATCTCCGGCCTCCGCCAGCGTTCCGGGTCCGGCATCGTCCAGAGAGTCAGATTGGAGAACTTCATGTGCCACAGTAGCTTGCAGATTGAGCTCGGCGACTGGGTCAATTTCATCACCGGCCAAAATGGAAGTGGTAAAAGTGCAATACTGACAGCTCTGTGTGTGGCCTTTGGGTCTCGAGCTAAAGGCACTCAAAGGGCGTCGACATTGAAGGATTTCATAAAAACTGGTTGCAGTAATGCTGTTGTCCAAGTGGAACTCAAAAATCAAGGGGAGGATGCTTTTAAGCCTGAAATATATGGGGACATCATAACGGTAGAGCGCAGGATTTCTGGAACCACAAGCGCCACTGTTTTGAAGGATAAACAAGGAAGAAGGGTTGCTGCTCGAAAAGAGGATCTTCGAGAGCTAGTAGAACATTTTAATATTGATGTGGAGAATCCTTGTGTTGTCATGAGTCAAGACAAAAGCAGAGAGTTTTTGCATTCTGGGAATGACAAAGATAAATTCAAGTTCTTTTACAAGGCCACACTTCTTCAGCAAGTTGAAGATCTTTTGCAAAACATTGAAAAACAGTTGGAGAAGGCAGGTGTTGTTGTTGATGAATTAGAGGGCTCAATAAGACCTATTGAAAGGGAACTTAATGAGTTGCAAGAAAAGATTAAAAGCATGGAGCATGTTGAAGAAATATCTCAAAAAGCAAAACAGTTAAAAAAGAAGCTTGCTTGGTCATGGGTATATGATGTGGACAAGCAACTCCAGGAACAGAATTTGAGAATTGTCAAGCTGAAAGATCGTGTGCCTCGATGTCAAGCTAAAATTGATGAAAAAATAGGTCAAGTGGTGAAACTGAGAGAATGCTTCACCTTGAAGAAATCTGAAATTGATCAGATGATGGCAAAGACATCAGAAATTAGGAGAATGAAGGACGAATTACAGCAGACACTAACATTGGCCACGAAAGAGAAGATTGGGATTGGAGAAGAATATAGCCGCAAAGCTAACCATATCCAGAAGTTGATGAATGCTGTTAGGTCTCTTCAGCAACAGATTGAGGATACACAGGAGCAACATGCCAAACATACACAGGCAGAAGAATCTGCAATAGAGGAAAAGCTGAAAGAACTCCAAAATGAGGTTTCTACTGTTGAATCAATGCTTACCAGGTTGAAGGAAGAGGAGAGTGCCTTATCAGAATGCATACAACAGATAAATAATGAAATCAGAGAGATAAATCAAATGATTCAAAATATTGACAAGAATCGCCGAGAGATCTCAAGTGTTATTCGTGAGCTTCGTCAAAACCAAACCAACAAGGTGACAGCATTTGGTGGACAGCAGGTGATATACCTCCTACAATCGATTGAGAGACATCATCAAAGATTCACAAGTCCTCCTATTGGTCCAATTGGTGCCCACCTGACTTTGAATAATGGAGATGTCTGGGGCCCTGCTGTTGAACATGCCATTGGAAGGTTGCTCAATGCTTTCATTGTAACGAATCATAAAGACTCTCTTCTTCTGAGAGCATGTGCAAAAGAAGCGAAGTACAACAACGTTCAGATTATCATATATGACTTTTCATTACCAAGGTTGCATATACCTCCTCACATGCTTCCACAAACAGAGCACCCAACTACTCTTTCCCGTGTTCATTCTGAAAATCATACTGTTCTAAATGTTTTGGTAGATAGGGGAGATATTGAAAGGCAAGTTCTTGTACGAGATTATGACGTGGGAAAAACAGTTGCTTTTGACCAGAGGATCTCAAATTTAAAGGAGGTTGTCACTTTAGATGGTAGTAGGATGTTTTCTCGTGGCTCTGTCCAGACAGTACTCCCTCCCAATAAGAGAGTTAGAACTGGTCGTCTTTGTAGTTCTTACGATGATCAAATTAGTGATCTTGAAAGGCAAGCGAAAAGTGTAGAAGAAGAAGATAAGCAGTGCATGAGGAGAAAAAGAAATGCAGAGCAAAACCTTCAGGATCTTCAAGAGAAGCTCCGAAATGTGAAGAGGAGGCGTGCGCATGCGGACCGTGATTTGGCATCTAAGAGAATAGCGCTTCAAGACAGTGCGTATGCTGCCGAAGCTAGTACATCACCTGCATCAACTGTTGATGAGCTTCACCAAGAAATCTCAAAAATGCAAGAGGAGATTCAAGAAAAGAAAATGTTGCTGCAAAAGTTTCGAGAGAGAACTGATGAAGCTGAAGCAAAGACCCATGATCTTAAAGTATCATATGAGAAACTATGTGAGTCAGCAAAAGGAGATATTGATGCCTTTGAGAAAGCAGAGAGAGAACTGATGGAGACTGAAGAAAATCTGGCTTCTGCAGAAGATGAGAAAGCTCATTATGAAGGTGTAATGAGGAACAAGGTACTTCGCGATATCCAAGAAGCAGAAAAAGAATTTCAGCAGCTTGAGCATCATCGTGAGGAGAATTGTAGAAAGGCTTCTATCCTTTGTCCTGAGAGTGAAATTATAGCTATGGGTGATTGGGATGGTAGCACCCCGGAACAGCTCAGTGCCCTATTAACCAGGCTGAATCAGAGGCTTGAGCGAGAGAGCCAGAGATTCACTGAATCCATTGATGACCTTCGATTGTCATATAAGAAAAAAGAACGTAAGATATTAGAAAGACAGAAAAAGTACAGAGCTTACCGAGAAAAGTTACATGCATGCCAGAAAGCCCTAAATTTGCGACGTAGCAAGTTTGAAAGAAACGCAAATCTTTTAAAGCGCCAGTTGACATGGCATTTTAATACCCATCTGGGAAGGAAAGGGATGAGTGGGAAAATTAAGATAGATGACAGGGAGAGGACCCTTGCTATTGAGGTAAAGATGCCCCAGGATGCATCAAGCAGCACTGTTCGCGACACTAGAGGGCTTTCAGGTGGAGAGCGCTCCTTTTCAACATTGTGCTTTACATTGTCTCTTCATGAAATGACGGAAGCCCCGTTTAGAGCAATGGACGAGTTTGATGTTTTCATGGATGCCGTAAGCCGGAAAATCAGCCTAGACACTCTTGTCGATTTTGCATTGGTGCAAGGATCCCAATGGATACTCATCACCCCTCACGATATCAGTATGGTGAAGAACGGGGAGAGGATAAAGAAGCAGCAAATGGCAGCTCCTCGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_23 SMC_N

Protein Analysis

1052

Amino Acids

120.88

Weight (kDa)

8.37

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_N	PF02463	17 - 1043	3e-24	RecF/RecN/SMC N terminal domain
AAA_23	PF13476	19 - 244	4.6e-23	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07660 AT5G61460
fragaria_vesca	FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291
malus_domestica	MD07G1252300.v1.1
prunus_persica	Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1
pyrus_communis	pycom07g22470
rosa_chinensis	RchiOBHm_Chr1g0342881 RchiOBHm_Chr1g0374131 RchiOBHm_Chr4g0408871 RchiOBHm_Chr7g0243831
rosa_laevigata	RLG00000026760
rosa_multiflora	Rmu_sc0008430.1_g000005 Rmu_sc0020614.1_g000004 Rmu_sc0028209.1_g000001 Rmu_sc0039486.1_g000001 Rmu_ssc0000450.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283700 Rroxscaffold_5G00354810
rosa_rugosa	Rorug01G0380900.1
rosa_samantha	Rh1AG391800 Rh1BG355900 Rh1DG386500 Rh4DG145500 Rh4DG209300
rosa_wichuraiana	Rw1G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	590, 1342, 2122
AasI	GACNNNNNNGTC	1 cut(s)	3038
Acc16I	TGCGCA	1 cut(s)	2037
Acc36I	ACCTGC	3 cut(s)	590, 1342, 2122
AccB1I	GGYRCC	1 cut(s)	1424
AccI	GTMKAC	1 cut(s)	215
AccII	CGCG	2 cut(s)	2397, 2886
AciI	CCGC	3 cut(s)	25, 1006, 2042
AclI	AACGTT	1 cut(s)	1569
AclWI	GGATC	5 cut(s)	417, 1784, 2004, 3057, 3070
AcoI	YGGCCR	2 cut(s)	130, 966
AcsI	RAATTY	5 cut(s)	518, 781, 1783, 2420, 2707
AcuI	CTGAAG	5 cut(s)	533, 1037, 1976, 2241, 2346
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	6 cut(s)	1562, 1734, 1848, 2107, 2391, 2663
AfeI	AGCGCT	2 cut(s)	2073, 2915
AfiI	CCNNNNNNNGG	6 cut(s)	17, 1147, 1412, 1485, 2053, 3015
AjiI	CACGTC	1 cut(s)	1747
AjnI	CCWGG	4 cut(s)	771, 1175, 2549, 2859
AjuI	GAANNNNNNNTTGG	4 cut(s)	1464, 1496, 1639, 1671
Alw21I	GWGCWC	2 cut(s)	105, 1644
Alw26I	GTCTC	5 cut(s)	192, 1053, 1375, 2315, 2949
AlwI	GGATC	5 cut(s)	417, 1784, 2004, 3057, 3070
Ama87I	CYCGRG	1 cut(s)	189
Aor51HI	AGCGCT	2 cut(s)	2073, 2915
AoxI	GGCC	6 cut(s)	19, 130, 177, 537, 966, 1459
ApaI	GGGCCC	1 cut(s)	1463
ApeKI	GCWGC	7 cut(s)	395, 2093, 2188, 2428, 2874, 3130, 3140
ApoI	RAATTY	5 cut(s)	518, 781, 1783, 2420, 2707
Asp700I	GAANNNNTTC	2 cut(s)	227, 2464
AspLEI	GCGC	6 cut(s)	336, 359, 2038, 2074, 2754, 2916
AspS9I	GGNCC	6 cut(s)	39, 1415, 1459, 1460, 2044, 2832
AsuC2I	CCSGG	2 cut(s)	37, 2525
AvaI	CYCGRG	1 cut(s)	189
AvaII	GGWCC	4 cut(s)	39, 1415, 2044, 2832
BaeGI	GKGCMC	3 cut(s)	1429, 1463, 2542
BalI	TGGCCA	1 cut(s)	968
BamHI	GGATCC	1 cut(s)	3062
BanI	GGYRCC	1 cut(s)	1424
BanII	GRGCYC	3 cut(s)	105, 629, 1463
BarI	GAAGNNNNNNTAC	2 cut(s)	2449, 2481
BauI	CACGAG	1 cut(s)	1827
Bbv12I	GWGCWC	2 cut(s)	105, 1644
BbvI	GCAGC	7 cut(s)	382, 2080, 2175, 2440, 2886, 3142, 3152
BccI	CCATC	5 cut(s)	901, 1802, 2311, 2507, 2787
BceAI	ACGGC	1 cut(s)	2993
BcgI	CGANNNNNNTGC	2 cut(s)	2180, 2214
BciT130I	CCWGG	4 cut(s)	773, 1177, 2551, 2861
BciVI	GTATCC	2 cut(s)	1063, 3066
BclI	TGATCA	2 cut(s)	898, 1900
BcnI	CCSGG	2 cut(s)	37, 2525
BcoDI	GTCTC	5 cut(s)	192, 1053, 1375, 2315, 2949
BfaI	CTAG	4 cut(s)	422, 2103, 2892, 3029
BfmI	CTRYAG	1 cut(s)	2343
BfoI	RGCGCY	4 cut(s)	360, 2075, 2755, 2917
BfuAI	ACCTGC	3 cut(s)	590, 1342, 2122
BfuI	GTATCC	2 cut(s)	1063, 3066
BglII	AGATCT	2 cut(s)	562, 1284
BisI	GCNGC	8 cut(s)	396, 1006, 2094, 2189, 2429, 2875, 3131, 3141
BlsI	GCNGC	8 cut(s)	397, 1007, 2095, 2190, 2430, 2876, 3132, 3142
BmcAI	AGTACT	1 cut(s)	1848
Bme1390I	CCNGG	6 cut(s)	37, 773, 1177, 2525, 2551, 2861
Bme18I	GGWCC	4 cut(s)	39, 1415, 2044, 2832
BmeT110I	CYCGRG	1 cut(s)	189
BmgBI	CACGTC	1 cut(s)	1747
BmgT120I	GGNCC	6 cut(s)	39, 1415, 1459, 1460, 2044, 2832
BmiI	GGNNCC	7 cut(s)	40, 349, 1426, 1460, 1461, 2834, 3064
BmrFI	CCNGG	6 cut(s)	37, 773, 1177, 2525, 2551, 2861
BmrI	ACTGGG	1 cut(s)	121
BmuI	ACTGGG	1 cut(s)	121
BpmI	CTGGAG	1 cut(s)	755
BpuEI	CTTGAG	3 cut(s)	1273, 2453, 2588
BpuMI	CCSGG	2 cut(s)	37, 2525
Bsa29I	ATCGAT	1 cut(s)	1373
BsaBI	GATNNNNATC	1 cut(s)	3077
BsaHI	GRCGYC	1 cut(s)	212
BsaI	GGTCTC	2 cut(s)	192, 1053
BsaJI	CCNNGG	3 cut(s)	1601, 2523, 2859
BsaXI	ACNNNNNCTCC	3 cut(s)	29, 1390, 1420
Bsc4I	CCNNNNNNNGG	6 cut(s)	17, 1147, 1412, 1485, 2053, 3015
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	4 cut(s)	116, 244, 1879, 2755
Bse3DI	GCAATG	1 cut(s)	2985
Bse8I	GATNNNNATC	1 cut(s)	3077
BseBI	CCWGG	4 cut(s)	773, 1177, 2551, 2861
BseCI	ATCGAT	1 cut(s)	1373
BseDI	CCNNGG	3 cut(s)	1601, 2523, 2859
BseGI	GGATG	6 cut(s)	295, 1824, 2518, 2802, 2869, 3010
BseJI	GATNNNNATC	1 cut(s)	3077
BseLI	CCNNNNNNNGG	6 cut(s)	17, 1147, 1412, 1485, 2053, 3015
BseMI	GCAATG	1 cut(s)	2985
BseMII	CTCAG	4 cut(s)	854, 1526, 2472, 2548
BseNI	ACTGG	4 cut(s)	116, 244, 1879, 2755
BseRI	GAGGAG	7 cut(s)	1205, 1608, 1978, 2041, 2177, 2462, 3135
BseSI	GKGCMC	3 cut(s)	1429, 1463, 2542
BseXI	GCAGC	7 cut(s)	382, 2080, 2175, 2440, 2886, 3142, 3152
Bsh1236I	CGCG	2 cut(s)	2397, 2886
BshFI	GGCC	6 cut(s)	21, 132, 179, 539, 968, 1461
BshNI	GGYRCC	1 cut(s)	1424
BshVI	ATCGAT	1 cut(s)	1373
BsiHKAI	GWGCWC	2 cut(s)	105, 1644
BsiHKCI	CYCGRG	1 cut(s)	189
BsiSI	CCGG	6 cut(s)	18, 36, 42, 129, 2525, 3016
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	6 cut(s)	17, 1147, 1412, 1485, 2053, 3015
BsmAI	GTCTC	5 cut(s)	192, 1053, 1375, 2315, 2949
BsmFI	GGGAC	1 cut(s)	329
BsmI	GAATGC	4 cut(s)	496, 875, 1042, 1214
BsnI	GGCC	6 cut(s)	21, 132, 179, 539, 968, 1461
Bso31I	GGTCTC	2 cut(s)	192, 1053
BsoBI	CYCGRG	1 cut(s)	189
Bsp120I	GGGCCC	1 cut(s)	1459
Bsp1286I	GDGCHC	6 cut(s)	105, 629, 1429, 1463, 1644, 2542
Bsp68I	TCGCGA	2 cut(s)	2397, 2886
BspACI	CCGC	3 cut(s)	25, 1006, 2042
BspANI	GGCC	6 cut(s)	21, 132, 179, 539, 968, 1461
BspCNI	CTCAG	4 cut(s)	855, 1527, 2473, 2547
BspDI	ATCGAT	1 cut(s)	1373
BspFNI	CGCG	2 cut(s)	2397, 2886
BspHI	TCATGA	2 cut(s)	465, 2950
BspLI	GGNNCC	7 cut(s)	40, 349, 1426, 1460, 1461, 2834, 3064
BspMAI	CTGCAG	1 cut(s)	2347
BspMI	ACCTGC	3 cut(s)	590, 1342, 2122
BspPI	GGATC	5 cut(s)	417, 1784, 2004, 3057, 3070
BspT107I	GGYRCC	1 cut(s)	1424
BspTNI	GGTCTC	2 cut(s)	192, 1053
BsrDI	GCAATG	1 cut(s)	2985
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	4 cut(s)	116, 244, 1879, 2755
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	3 cut(s)	1601, 2523, 2859
BssNI	GRCGYC	1 cut(s)	212
BssSI	CACGAG	1 cut(s)	1827
BssT1I	CCWWGG	1 cut(s)	1601
Bst2BI	CACGAG	1 cut(s)	1827
Bst2UI	CCWGG	4 cut(s)	773, 1177, 2551, 2861
Bst6I	CTCTTC	5 cut(s)	1056, 1182, 1533, 2018, 2952
BstACI	GRCGYC	1 cut(s)	212
BstC8I	GCNNGC	7 cut(s)	29, 92, 735, 1926, 2034, 2040, 2692
BstDEI	CTNAG	5 cut(s)	863, 1535, 2061, 2481, 2534
BstEII	GGTNACC	1 cut(s)	5
BstF5I	GGATG	6 cut(s)	295, 1824, 2518, 2802, 2869, 3010
BstFNI	CGCG	2 cut(s)	2397, 2886
BstH2I	RGCGCY	4 cut(s)	360, 2075, 2755, 2917
BstHHI	GCGC	6 cut(s)	336, 359, 2038, 2074, 2754, 2916
BstMAI	GTCTC	5 cut(s)	192, 1053, 1375, 2315, 2949
BstMWI	GCNNNNNNNGC	7 cut(s)	87, 100, 1553, 2093, 2099, 2434, 2883
BstNI	CCWGG	4 cut(s)	773, 1177, 2551, 2861
BstNSI	RCATGY	8 cut(s)	692, 1088, 1478, 1545, 1627, 2042, 2690, 2694
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	6 cut(s)	35, 771, 1175, 2523, 2549, 2859
BstSFI	CTRYAG	1 cut(s)	2343
BstSLI	GKGCMC	3 cut(s)	1429, 1463, 2542
BstUI	CGCG	2 cut(s)	2397, 2886
BstV1I	GCAGC	7 cut(s)	382, 2080, 2175, 2440, 2886, 3142, 3152
BstX2I	RGATCY	6 cut(s)	409, 562, 1284, 1776, 1996, 3062
BstYI	RGATCY	6 cut(s)	409, 562, 1284, 1776, 1996, 3062
Bsu15I	ATCGAT	1 cut(s)	1373
BsuI	GTATCC	2 cut(s)	1063, 3066
BsuRI	GGCC	6 cut(s)	21, 132, 179, 539, 968, 1461
BsuTUI	ATCGAT	1 cut(s)	1373
BtrI	CACGTC	1 cut(s)	1747
BtsCI	GGATG	6 cut(s)	295, 1824, 2518, 2802, 2869, 3010
BtsI	GCAGTG	1 cut(s)	1961
BtsIMutI	CAGTG	6 cut(s)	360, 1961, 2089, 2542, 2589, 2877
BtuMI	TCGCGA	2 cut(s)	2397, 2886
BveI	ACCTGC	3 cut(s)	590, 1342, 2122
Cac8I	GCNNGC	7 cut(s)	29, 92, 735, 1926, 2034, 2040, 2692
CciI	TCATGA	2 cut(s)	465, 2950
CfoI	GCGC	6 cut(s)	336, 359, 2038, 2074, 2754, 2916
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	6 cut(s)	39, 1415, 1459, 1460, 2044, 2832
ClaI	ATCGAT	1 cut(s)	1373
CpoI	CGGWCCG	1 cut(s)	2044
CseI	GACGC	1 cut(s)	201
CsiI	ACCWGGT	1 cut(s)	1175
Csp6I	GTAC	6 cut(s)	1561, 1733, 1847, 2106, 2390, 2662
CspI	CGGWCCG	1 cut(s)	2044
CviQI	GTAC	6 cut(s)	1561, 1733, 1847, 2106, 2390, 2662
DdeI	CTNAG	5 cut(s)	863, 1535, 2061, 2481, 2534
DraI	TTTAAA	2 cut(s)	1788, 2748
DrdI	GACNNNNNNGTC	1 cut(s)	3038
DseDI	GACNNNNNNGTC	1 cut(s)	3038
EaeI	YGGCCR	2 cut(s)	130, 966
Eam1104I	CTCTTC	5 cut(s)	1056, 1182, 1533, 2018, 2952
EarI	CTCTTC	5 cut(s)	1056, 1182, 1533, 2018, 2952
EciI	GGCGGA	1 cut(s)	14
Ecl136II	GAGCTC	1 cut(s)	103
Eco130I	CCWWGG	1 cut(s)	1601
Eco24I	GRGCYC	3 cut(s)	105, 629, 1463
Eco31I	GGTCTC	2 cut(s)	192, 1053
Eco32I	GATATC	2 cut(s)	2401, 3094
Eco47I	GGWCC	4 cut(s)	39, 1415, 2044, 2832
Eco47III	AGCGCT	2 cut(s)	2073, 2915
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	5 cut(s)	533, 1037, 1976, 2241, 2346
Eco88I	CYCGRG	1 cut(s)	189
Eco91I	GGTNACC	1 cut(s)	5
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	3 cut(s)	1459, 1460, 2832
EcoO65I	GGTNACC	1 cut(s)	5
EcoRII	CCWGG	4 cut(s)	771, 1175, 2549, 2859
EcoRV	GATATC	2 cut(s)	2401, 3094
EcoT14I	CCWWGG	1 cut(s)	1601
EcoT22I	ATGCAT	3 cut(s)	1214, 2692, 2869
EcoT38I	GRGCYC	3 cut(s)	105, 629, 1463
ErhI	CCWWGG	1 cut(s)	1601
FalI	AAGNNNNNCTT	4 cut(s)	396, 428, 1512, 1544
FaqI	GGGAC	1 cut(s)	329
FauNDI	CATATG	1 cut(s)	2251
FbaI	TGATCA	2 cut(s)	898, 1900
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	8 cut(s)	396, 1006, 2094, 2189, 2429, 2875, 3131, 3141
FokI	GGATG	6 cut(s)	302, 1831, 2525, 2809, 2876, 3017
FriOI	GRGCYC	3 cut(s)	105, 629, 1463
Fsp4HI	GCNGC	8 cut(s)	396, 1006, 2094, 2189, 2429, 2875, 3131, 3141
FspAI	RTGCGCAY	1 cut(s)	2037
FspBI	CTAG	4 cut(s)	422, 2103, 2892, 3029
FspI	TGCGCA	1 cut(s)	2037
GlaI	GCGC	6 cut(s)	335, 358, 2037, 2073, 2753, 2915
GluI	GCNGC	8 cut(s)	396, 1006, 2094, 2189, 2429, 2875, 3131, 3141
GsuI	CTGGAG	1 cut(s)	755
HaeII	RGCGCY	4 cut(s)	360, 2075, 2755, 2917
HaeIII	GGCC	6 cut(s)	21, 132, 179, 539, 968, 1461
HapII	CCGG	6 cut(s)	18, 36, 42, 129, 2525, 3016
HgaI	GACGC	1 cut(s)	201
HhaI	GCGC	6 cut(s)	336, 359, 2038, 2074, 2754, 2916
Hin1I	GRCGYC	1 cut(s)	212
Hin6I	GCGC	6 cut(s)	334, 357, 2036, 2072, 2752, 2914
HinP1I	GCGC	6 cut(s)	334, 357, 2036, 2072, 2752, 2914
HincII	GTYRAC	2 cut(s)	216, 2760
HindII	GTYRAC	2 cut(s)	216, 2760
HindIII	AAGCTT	1 cut(s)	731
HpaII	CCGG	6 cut(s)	18, 36, 42, 129, 2525, 3016
Hpy166II	GTNNAC	4 cut(s)	216, 760, 1346, 2760
Hpy8I	GTNNAC	4 cut(s)	216, 760, 1346, 2760
Hpy99I	CGWCG	2 cut(s)	217, 2718
HpyCH4IV	ACGT	4 cut(s)	1569, 1746, 2635, 2716
HpyF10VI	GCNNNNNNNGC	7 cut(s)	87, 100, 1553, 2093, 2099, 2434, 2883
HpyF3I	CTNAG	5 cut(s)	863, 1535, 2061, 2481, 2534
HpySE526I	ACGT	4 cut(s)	1569, 1746, 2635, 2716
Hsp92I	GRCGYC	1 cut(s)	212
HspAI	GCGC	6 cut(s)	334, 357, 2036, 2072, 2752, 2914
Ksp22I	TGATCA	2 cut(s)	898, 1900
LmnI	GCTCC	5 cut(s)	685, 1078, 2016, 2921, 3148
Lsp1109I	GCAGC	7 cut(s)	382, 2080, 2175, 2440, 2886, 3142, 3152
MabI	ACCWGGT	1 cut(s)	1175
MaeI	CTAG	4 cut(s)	422, 2103, 2892, 3029
MaeII	ACGT	4 cut(s)	1569, 1746, 2635, 2716
MaeIII	GTNAC	5 cut(s)	5, 1330, 1507, 1798, 2682
MfeI	CAATTG	1 cut(s)	1419
MflI	RGATCY	6 cut(s)	409, 562, 1284, 1776, 1996, 3062
MhlI	GDGCHC	6 cut(s)	105, 629, 1429, 1463, 1644, 2542
MlsI	TGGCCA	1 cut(s)	968
MluNI	TGGCCA	1 cut(s)	968
MlyI	GAGTC	4 cut(s)	66, 478, 1517, 2276
MmeI	TCCRAC	1 cut(s)	570
Mox20I	TGGCCA	1 cut(s)	968
Mph1103I	ATGCAT	3 cut(s)	1214, 2692, 2869
MroXI	GAANNNNTTC	2 cut(s)	227, 2464
MscI	TGGCCA	1 cut(s)	968
MslI	CAYNNNNRTG	1 cut(s)	2442
Msp20I	TGGCCA	1 cut(s)	968
MspI	CCGG	6 cut(s)	18, 36, 42, 129, 2525, 3016
MspR9I	CCNGG	6 cut(s)	37, 773, 1177, 2525, 2551, 2861
MunI	CAATTG	1 cut(s)	1419
Mva1269I	GAATGC	4 cut(s)	496, 875, 1042, 1214
MvaI	CCWGG	4 cut(s)	773, 1177, 2551, 2861
MvnI	CGCG	2 cut(s)	2397, 2886
MwoI	GCNNNNNNNGC	7 cut(s)	87, 100, 1553, 2093, 2099, 2434, 2883
NciI	CCSGG	2 cut(s)	37, 2525
NdeI	CATATG	1 cut(s)	2251
NlaIV	GGNNCC	7 cut(s)	40, 349, 1426, 1460, 1461, 2834, 3064
NmeAIII	GCCGAG	2 cut(s)	84, 1304
NmuCI	GTSAC	3 cut(s)	5, 1330, 1798
NruI	TCGCGA	2 cut(s)	2397, 2886
NsbI	TGCGCA	1 cut(s)	2037
NsiI	ATGCAT	3 cut(s)	1214, 2692, 2869
NspI	RCATGY	8 cut(s)	692, 1088, 1478, 1545, 1627, 2042, 2690, 2694
PaeI	GCATGC	2 cut(s)	2042, 2694
PaeR7I	CTCGAG	1 cut(s)	189
PagI	TCATGA	2 cut(s)	465, 2950
PaqCI	CACCTGC	3 cut(s)	590, 1342, 2122
PcsI	WCGNNNNNNNCGW	3 cut(s)	814, 1306, 2966
PctI	GAATGC	4 cut(s)	496, 875, 1042, 1214
PdmI	GAANNNNTTC	2 cut(s)	227, 2464
PflFI	GACNNNGTC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	771
PkrI	GCNGC	8 cut(s)	397, 1007, 2095, 2190, 2430, 2876, 3132, 3142
PleI	GAGTC	4 cut(s)	65, 477, 1517, 2275
PpsI	GAGTC	4 cut(s)	65, 477, 1517, 2275
PpuMI	RGGWCCY	1 cut(s)	2832
Psp124BI	GAGCTC	1 cut(s)	105
Psp1406I	AACGTT	1 cut(s)	1569
Psp5II	RGGWCCY	1 cut(s)	2832
Psp6I	CCWGG	4 cut(s)	771, 1175, 2549, 2859
PspEI	GGTNACC	1 cut(s)	5
PspGI	CCWGG	4 cut(s)	771, 1175, 2549, 2859
PspN4I	GGNNCC	7 cut(s)	40, 349, 1426, 1460, 1461, 2834, 3064
PspOMI	GGGCCC	1 cut(s)	1459
PspPI	GGNCC	6 cut(s)	39, 1415, 1459, 1460, 2044, 2832
PspPPI	RGGWCCY	1 cut(s)	2832
PstI	CTGCAG	1 cut(s)	2347
PsuI	RGATCY	6 cut(s)	409, 562, 1284, 1776, 1996, 3062
PsyI	GACNNNGTC	1 cut(s)	113
RruI	TCGCGA	2 cut(s)	2397, 2886
RsaI	GTAC	6 cut(s)	1562, 1734, 1848, 2107, 2391, 2663
RsaNI	GTAC	6 cut(s)	1561, 1733, 1847, 2106, 2390, 2662
RseI	CAYNNNNRTG	1 cut(s)	2442
Rsr2I	CGGWCCG	1 cut(s)	2044
RsrII	CGGWCCG	1 cut(s)	2044
SacI	GAGCTC	1 cut(s)	105
SalI	GTCGAC	1 cut(s)	214
SatI	GCNGC	8 cut(s)	396, 1006, 2094, 2189, 2429, 2875, 3131, 3141
Sau96I	GGNCC	6 cut(s)	39, 1415, 1459, 1460, 2044, 2832
ScaI	AGTACT	1 cut(s)	1848
SchI	GAGTC	4 cut(s)	66, 478, 1517, 2276
ScrFI	CCNGG	6 cut(s)	37, 773, 1177, 2525, 2551, 2861
SduI	GDGCHC	6 cut(s)	105, 629, 1429, 1463, 1644, 2542
SexAI	ACCWGGT	1 cut(s)	1175
SfcI	CTRYAG	1 cut(s)	2343
Sfr274I	CTCGAG	1 cut(s)	189
SinI	GGWCC	4 cut(s)	39, 1415, 2044, 2832
SlaI	CTCGAG	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	2442
SmlI	CTYRAG	4 cut(s)	189, 1288, 2432, 2567
SmoI	CTYRAG	4 cut(s)	189, 1288, 2432, 2567
SphI	GCATGC	2 cut(s)	2042, 2694
SsiI	CCGC	3 cut(s)	25, 1006, 2042
SspI	AATATT	2 cut(s)	439, 1264
SspMI	CTAG	4 cut(s)	422, 2103, 2892, 3029
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	6 cut(s)	35, 771, 1175, 2523, 2549, 2859
StyI	CCWWGG	1 cut(s)	1601
TaiI	ACGT	4 cut(s)	1572, 1749, 2638, 2719
TaqI	TCGA	9 cut(s)	190, 215, 400, 415, 817, 1373, 2200, 2611, 3042
TatI	WGTACW	4 cut(s)	1560, 1846, 2105, 2661
TauI	GCSGC	1 cut(s)	1008
TscAI	CASTG	6 cut(s)	367, 1961, 2089, 2542, 2596, 2884
TseFI	GTSAC	3 cut(s)	5, 1330, 1798
TseI	GCWGC	7 cut(s)	395, 2093, 2188, 2428, 2874, 3130, 3140
Tsp45I	GTSAC	3 cut(s)	5, 1330, 1798
TspGWI	ACGGA	1 cut(s)	2975
TspRI	CASTG	6 cut(s)	367, 1961, 2089, 2542, 2596, 2884
Tth111I	GACNNNGTC	1 cut(s)	113
VpaK11BI	GGWCC	4 cut(s)	39, 1415, 2044, 2832
XapI	RAATTY	5 cut(s)	518, 781, 1783, 2420, 2707
XceI	RCATGY	8 cut(s)	692, 1088, 1478, 1545, 1627, 2042, 2690, 2694
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XhoI	CTCGAG	1 cut(s)	189
XmiI	GTMKAC	1 cut(s)	215
XmnI	GAANNNNTTC	2 cut(s)	227, 2464
XspI	CTAG	4 cut(s)	422, 2103, 2892, 3029
ZrmI	AGTACT	1 cut(s)	1848
Zsp2I	ATGCAT	3 cut(s)	1214, 2692, 2869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.