Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003625

Physical Location & Seq

Genomic Coordinates Forward (+)

31771845 .. 31775049

Gene Structure 3205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37994

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCCGGTAAAGGCGCGTCCACACTTTACGGTCATCACAGAAGCAACGAACAAACTGAGACGGTCACCTCCGGACCCAGTGGCTGTGCTGAGAGGTCACCGTGCCTCTGTTTCCTCAGAAGGTGAGTTGCGGATTTGGAACACTCTGCAGAATCGGACGAGGGTAAGTAGCATTTTGTTTCATGATGTTATGTTGTTAGTTTTCCCATGCAGGGTGCATAATGCGGCACATGGGGTTGCTTCTATTGCTTCCAGGGTAAGGATGGAACTGTTAAAAAAGTGCTGGGATATTGGAGATAGGAGGTCTATCGAGGTTGAGATTTGGGATCTTAATACTGCAGAAAGGTGTATGCGACTACCTCAAAGCTGTTCTGCTAGCTCCTCAGCAATTTCTACCAAGGAAAGAGTTCAAGCATTTTTACCATCGGAATCACTGGGATTCCTAAATGTCCTGGCTGGGAATGTTCTTCTATTCTCATTAGCAATCGAGTATGTCTATGACTGCGGTGGAGACATTACAAGATCATATTATGAGGATGGCTCCATGCTTTGGTGGGATATTAGAAATCCAGATGTTCCAGTTACATCTGTCAAGTTTCATTCAGAGCCAGGAGCTGTAGCTGAAAAAATTGTGCTCTACAGTTTGGATAATTCCATGGGTACATGTGTGATAAACAAAGAAACTGATTTGGAGCGACCTGGCATATCAAGCACCTCTATTCAACCTTATGGTAAAATATTTGCAACAGCTGGCTGGGATCACAGAGTGAGAGTATATAACTATCGCAAAGGAAATGCTTTGGCAATATTGAAGTATGGAGAATTCTTAGGTACCTTGGTGTTTGCCATACCCTCATTTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

287

Amino Acids

32.11

Weight (kDa)

8.65

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07660 AT5G61460
fragaria_vesca	FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291
malus_domestica	MD07G1252300.v1.1
prunus_persica	Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1
pyrus_communis	pycom07g22470
rosa_chinensis	RchiOBHm_Chr1g0342881 RchiOBHm_Chr1g0374131 RchiOBHm_Chr4g0408871 RchiOBHm_Chr7g0243831
rosa_laevigata	RLG00000026760
rosa_multiflora	Rmu_sc0008430.1_g000005 Rmu_sc0020614.1_g000004 Rmu_sc0028209.1_g000001 Rmu_sc0039486.1_g000001 Rmu_ssc0000450.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283700 Rroxscaffold_5G00354810
rosa_rugosa	Rorug01G0380900.1
rosa_samantha	Rh1AG391800 Rh1BG355900 Rh1DG386500 Rh4DG145500 Rh4DG209300
rosa_wichuraiana	Rw1G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	830
AccB1I	GGYRCC	1 cut(s)	830
AccB7I	CCANNNNNTGG	1 cut(s)	549
AccII	CGCG	1 cut(s)	16
AccIII	TCCGGA	1 cut(s)	70
AciI	CCGC	3 cut(s)	130, 224, 504
AclWI	GGATC	2 cut(s)	333, 765
AcsI	RAATTY	1 cut(s)	821
AdeI	CACNNNGTG	1 cut(s)	766
AfaI	GTAC	2 cut(s)	661, 832
AfiI	CCNNNNNNNGG	3 cut(s)	211, 258, 549
AflIII	ACRYGT	1 cut(s)	662
AgsI	TTSAA	3 cut(s)	410, 722, 811
AjnI	CCWGG	4 cut(s)	251, 450, 607, 697
AluBI	AGCT	5 cut(s)	366, 378, 614, 620, 749
AluI	AGCT	5 cut(s)	366, 378, 614, 620, 749
Alw21I	GWGCWC	1 cut(s)	636
Alw26I	GTCTC	2 cut(s)	52, 504
AlwI	GGATC	2 cut(s)	333, 765
AlwNI	CAGNNNCTG	2 cut(s)	83, 614
Aor13HI	TCCGGA	1 cut(s)	70
ApoI	RAATTY	1 cut(s)	821
Asp700I	GAANNNNTTC	1 cut(s)	405
Asp718I	GGTACC	1 cut(s)	830
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	73
AsuHPI	GGTGA	3 cut(s)	57, 89, 134
AsuNHI	GCTAGC	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	73
BaeI	ACNNNNGTAYC	4 cut(s)	651, 684, 822, 855
BanI	GGYRCC	1 cut(s)	830
Bbv12I	GWGCWC	1 cut(s)	636
BbvCI	CCTCAGC	1 cut(s)	382
BccI	CCATC	3 cut(s)	256, 430, 530
BciT130I	CCWGG	4 cut(s)	253, 452, 609, 699
BcoDI	GTCTC	2 cut(s)	52, 504
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	4 cut(s)	146, 336, 615, 637
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	4 cut(s)	253, 452, 609, 699
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	3 cut(s)	75, 541, 832
BmrFI	CCNGG	4 cut(s)	253, 452, 609, 699
BmrI	ACTGGG	2 cut(s)	71, 443
BmtI	GCTAGC	1 cut(s)	378
BmuI	ACTGGG	2 cut(s)	71, 443
BplI	GAGNNNNNCTC	2 cut(s)	524, 556
Bpu10I	CCTNAGC	1 cut(s)	382
BsaJI	CCNNGG	4 cut(s)	252, 396, 654, 834
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 258, 549
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	3 cut(s)	77, 438, 578
BseAI	TCCGGA	1 cut(s)	70
BseBI	CCWGG	4 cut(s)	253, 452, 609, 699
BseDI	CCNNGG	4 cut(s)	252, 396, 654, 834
BseGI	GGATG	2 cut(s)	267, 541
BseLI	CCNNNNNNNGG	3 cut(s)	211, 258, 549
BseMII	CTCAG	4 cut(s)	47, 80, 129, 396
BseNI	ACTGG	3 cut(s)	77, 438, 578
BseRI	GAGGAG	1 cut(s)	370
BseYI	CCCAGC	3 cut(s)	282, 455, 753
Bsh1236I	CGCG	1 cut(s)	16
BshNI	GGYRCC	1 cut(s)	830
BsiHKAI	GWGCWC	1 cut(s)	636
BsiSI	CCGG	2 cut(s)	5, 71
BslI	CCNNNNNNNGG	3 cut(s)	211, 258, 549
BsmAI	GTCTC	2 cut(s)	52, 504
BsmBI	CGTCTC	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp13I	TCCGGA	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	325, 521, 757
Bsp19I	CCATGG	1 cut(s)	654
BspACI	CCGC	3 cut(s)	130, 224, 504
BspCNI	CTCAG	4 cut(s)	48, 81, 128, 395
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	16
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	3 cut(s)	75, 541, 832
BspMAI	CTGCAG	2 cut(s)	150, 340
BspOI	GCTAGC	1 cut(s)	378
BspPI	GGATC	2 cut(s)	333, 765
BspT107I	GGYRCC	1 cut(s)	830
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	3 cut(s)	77, 438, 578
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	4 cut(s)	252, 396, 654, 834
BssMI	GATC	3 cut(s)	325, 521, 757
BssT1I	CCWWGG	3 cut(s)	396, 654, 834
Bst2UI	CCWGG	4 cut(s)	253, 452, 609, 699
Bst4CI	ACNGT	5 cut(s)	31, 63, 101, 270, 641
BstC8I	GCNNGC	2 cut(s)	376, 751
BstDEI	CTNAG	5 cut(s)	56, 89, 115, 382, 826
BstDSI	CCRYGG	1 cut(s)	654
BstEII	GGTNACC	2 cut(s)	63, 95
BstF5I	GGATG	2 cut(s)	267, 541
BstFNI	CGCG	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	3 cut(s)	328, 524, 760
BstMAI	GTCTC	2 cut(s)	52, 504
BstMBI	GATC	3 cut(s)	325, 521, 757
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 708
BstNI	CCWGG	4 cut(s)	253, 452, 609, 699
BstNSI	RCATGY	1 cut(s)	666
BstPI	GGTNACC	2 cut(s)	63, 95
BstSCI	CCNGG	4 cut(s)	251, 450, 607, 697
BstSFI	CTRYAG	4 cut(s)	146, 336, 615, 637
BstUI	CGCG	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BtgI	CCRYGG	1 cut(s)	654
BtsCI	GGATG	2 cut(s)	267, 541
BtsIMutI	CAGTG	2 cut(s)	84, 431
Cac8I	GCNNGC	2 cut(s)	376, 751
CaiI	CAGNNNCTG	2 cut(s)	83, 614
CciI	TCATGA	1 cut(s)	181
CfoI	GCGC	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	73
CseI	GACGC	1 cut(s)	5
Csp6I	GTAC	2 cut(s)	660, 831
CviAII	CATG	6 cut(s)	182, 207, 230, 544, 655, 663
CviQI	GTAC	2 cut(s)	660, 831
DdeI	CTNAG	5 cut(s)	56, 89, 115, 382, 826
DpnI	GATC	3 cut(s)	327, 523, 759
DpnII	GATC	3 cut(s)	325, 521, 757
DraIII	CACNNNGTG	1 cut(s)	766
Eco130I	CCWWGG	3 cut(s)	396, 654, 834
Eco47I	GGWCC	1 cut(s)	73
Eco91I	GGTNACC	2 cut(s)	63, 95
EcoO65I	GGTNACC	2 cut(s)	63, 95
EcoRI	GAATTC	1 cut(s)	821
EcoRII	CCWGG	4 cut(s)	251, 450, 607, 697
EcoT14I	CCWWGG	3 cut(s)	396, 654, 834
ErhI	CCWWGG	3 cut(s)	396, 654, 834
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	6 cut(s)	185, 210, 233, 547, 658, 666
FatI	CATG	6 cut(s)	181, 206, 229, 543, 654, 662
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	2 cut(s)	274, 548
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	375
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	225
GsaI	CCCAGC	3 cut(s)	286, 459, 757
HapII	CCGG	2 cut(s)	5, 71
HgaI	GACGC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	6 cut(s)	185, 210, 233, 547, 658, 666
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HinfI	GANTC	3 cut(s)	151, 428, 438
HpaII	CCGG	2 cut(s)	5, 71
HphI	GGTGA	3 cut(s)	57, 89, 134
Hpy166II	GTNNAC	1 cut(s)	20
Hpy188I	TCNGA	4 cut(s)	118, 156, 427, 604
Hpy188III	TCNNGA	3 cut(s)	71, 182, 569
Hpy8I	GTNNAC	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	5 cut(s)	31, 63, 101, 270, 641
HpyCH4V	TGCA	5 cut(s)	148, 210, 217, 338, 743
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 708
HpyF3I	CTNAG	5 cut(s)	56, 89, 115, 382, 826
Hsp92II	CATG	6 cut(s)	185, 210, 233, 547, 658, 666
HspAI	GCGC	1 cut(s)	14
Kpn2I	TCCGGA	1 cut(s)	70
KpnI	GGTACC	1 cut(s)	834
Kzo9I	GATC	3 cut(s)	325, 521, 757
LmnI	GCTCC	4 cut(s)	383, 545, 611, 691
MaeI	CTAG	1 cut(s)	375
MaeIII	GTNAC	3 cut(s)	63, 95, 580
MalI	GATC	3 cut(s)	327, 523, 759
MboI	GATC	3 cut(s)	325, 521, 757
MboII	GAAGA	1 cut(s)	458
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	636
MluCI	AATT	4 cut(s)	387, 627, 649, 821
MroI	TCCGGA	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	3 cut(s)	272, 330, 862
MspA1I	CMGCKG	1 cut(s)	749
MspI	CCGG	2 cut(s)	5, 71
MspR9I	CCNGG	4 cut(s)	253, 452, 609, 699
MvaI	CCWGG	4 cut(s)	253, 452, 609, 699
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	2 cut(s)	245, 708
NcoI	CCATGG	1 cut(s)	654
NdeII	GATC	3 cut(s)	325, 521, 757
NheI	GCTAGC	1 cut(s)	374
NlaIII	CATG	6 cut(s)	185, 210, 233, 547, 658, 666
NlaIV	GGNNCC	3 cut(s)	75, 541, 832
NmuCI	GTSAC	2 cut(s)	63, 95
NspI	RCATGY	1 cut(s)	666
PagI	TCATGA	1 cut(s)	181
PciI	ACATGT	1 cut(s)	662
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	3 cut(s)	151, 428, 438
PflMI	CCANNNNNTGG	1 cut(s)	549
PkrI	GCNGC	1 cut(s)	226
PscI	ACATGT	1 cut(s)	662
Psp6I	CCWGG	4 cut(s)	251, 450, 607, 697
PspEI	GGTNACC	2 cut(s)	63, 95
PspFI	CCCAGC	3 cut(s)	282, 455, 753
PspGI	CCWGG	4 cut(s)	251, 450, 607, 697
PspN4I	GGNNCC	3 cut(s)	75, 541, 832
PspPI	GGNCC	1 cut(s)	73
PstI	CTGCAG	2 cut(s)	150, 340
PstNI	CAGNNNCTG	2 cut(s)	83, 614
PsuI	RGATCY	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	749
RsaI	GTAC	2 cut(s)	661, 832
RsaNI	GTAC	2 cut(s)	660, 831
SaqAI	TTAA	3 cut(s)	272, 330, 862
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	3 cut(s)	325, 521, 757
Sau96I	GGNCC	1 cut(s)	73
ScrFI	CCNGG	4 cut(s)	253, 452, 609, 699
SduI	GDGCHC	1 cut(s)	636
SfcI	CTRYAG	4 cut(s)	146, 336, 615, 637
SinI	GGWCC	1 cut(s)	73
Sse9I	AATT	4 cut(s)	387, 627, 649, 821
SsiI	CCGC	3 cut(s)	130, 224, 504
SspI	AATATT	2 cut(s)	738, 807
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	4 cut(s)	251, 450, 607, 697
StyI	CCWWGG	3 cut(s)	396, 654, 834
TaaI	ACNGT	5 cut(s)	31, 63, 101, 270, 641
TaqI	TCGA	2 cut(s)	309, 486
TasI	AATT	4 cut(s)	387, 627, 649, 821
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	3 cut(s)	151, 428, 438
Tru1I	TTAA	3 cut(s)	272, 330, 862
Tru9I	TTAA	3 cut(s)	272, 330, 862
TscAI	CASTG	2 cut(s)	84, 438
TseFI	GTSAC	2 cut(s)	63, 95
Tsp45I	GTSAC	2 cut(s)	63, 95
TspDTI	ATGAA	2 cut(s)	170, 587
TspRI	CASTG	2 cut(s)	84, 438
Van91I	CCANNNNNTGG	1 cut(s)	549
VpaK11BI	GGWCC	1 cut(s)	73
XapI	RAATTY	1 cut(s)	821
XceI	RCATGY	1 cut(s)	666
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.