Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028209.1

Orthogroup ID

OG0003625

Physical Location & Seq

Genomic Coordinates Forward (+)

308 .. 1613

Gene Structure 1306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028209.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atggaatctcgccaaattcactttagaattcaccctgttcatttactcaaacccaggtatcagagcagatcaattaattcgatccccaaaacaaacagacccaagccaccgcagctcttcgctctccccccaagccaccgcagctgcaccgcgaccgtgtctctacctcagactccctcgatccccaaaaaaaatagacccaagccaccgcagctcttcgctcgtcttcgctcttcgttctccccccaagccaccgcagctacaccgcgcctctgttccaaaactccactgtgtctctacctcagactccgtcaatccccaaaacaaacagactcaagccaccgcagctcttcactcgtctttgctcttcgctctccccccaggccaccgcagctgcaccgagcctctgttccaagcctccaccgtgtctctacctcagactccctctggttcgcgcctctgcctctaaacggtacattaaggaagggtcagcaaatagcattggatagactttcaaaaccttcaaaccaaggccttgaagagtttcaaaacgaggttacacttactgcaatacagcaccatgtgaatctggttagagggaagaaaagatgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

204

Amino Acids

23.04

Weight (kDa)

11.72

Isoelectric Point (pI)

71.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07660 AT5G61460
fragaria_vesca	FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291
malus_domestica	MD07G1252300.v1.1
prunus_persica	Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1
pyrus_communis	pycom07g22470
rosa_chinensis	RchiOBHm_Chr1g0342881 RchiOBHm_Chr1g0374131 RchiOBHm_Chr4g0408871 RchiOBHm_Chr7g0243831
rosa_laevigata	RLG00000026760
rosa_multiflora	Rmu_sc0008430.1_g000005 Rmu_sc0020614.1_g000004 Rmu_sc0028209.1_g000001 Rmu_sc0039486.1_g000001 Rmu_ssc0000450.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283700 Rroxscaffold_5G00354810
rosa_rugosa	Rorug01G0380900.1
rosa_samantha	Rh1AG391800 Rh1BG355900 Rh1DG386500 Rh4DG145500 Rh4DG209300
rosa_wichuraiana	Rw1G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	152, 268, 455
AciI	CCGC	8 cut(s)	110, 139, 150, 209, 255, 266, 343, 389
AclWI	GGATC	2 cut(s)	76, 175
AcsI	RAATTY	2 cut(s)	15, 27
AdeI	CACNNNGTG	1 cut(s)	583
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	1 cut(s)	470
AgsI	TTSAA	4 cut(s)	516, 525, 539, 548
AjnI	CCWGG	2 cut(s)	53, 380
AluBI	AGCT	6 cut(s)	115, 144, 214, 260, 348, 394
AluI	AGCT	6 cut(s)	115, 144, 214, 260, 348, 394
Alw26I	GTCTC	3 cut(s)	165, 299, 433
AlwI	GGATC	2 cut(s)	76, 175
AoxI	GGCC	2 cut(s)	383, 532
ApeKI	GCWGC	8 cut(s)	112, 141, 144, 211, 257, 345, 391, 394
ApoI	RAATTY	2 cut(s)	15, 27
AseI	ATTAAT	1 cut(s)	75
Asp700I	GAANNNNTTC	1 cut(s)	543
AspLEI	GCGC	2 cut(s)	270, 457
AsuHPI	GGTGA	1 cut(s)	23
BaeI	ACNNNNGTAYC	2 cut(s)	41, 74
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	8 cut(s)	124, 131, 153, 223, 269, 357, 381, 403
BciT130I	CCWGG	2 cut(s)	55, 382
BcoDI	GTCTC	3 cut(s)	165, 299, 433
BisI	GCNGC	8 cut(s)	113, 142, 145, 212, 258, 346, 392, 395
BlsI	GCNGC	8 cut(s)	114, 143, 146, 213, 259, 347, 393, 396
Bme1390I	CCNGG	2 cut(s)	55, 382
BmrFI	CCNGG	2 cut(s)	55, 382
BmsI	GCATC	1 cut(s)	599
BpiI	GAAGAC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	319
BsaJI	CCNNGG	3 cut(s)	53, 380, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
BseBI	CCWGG	2 cut(s)	55, 382
BseDI	CCNNGG	3 cut(s)	53, 380, 529
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMII	CTCAG	3 cut(s)	182, 316, 450
BseXI	GCAGC	8 cut(s)	124, 131, 153, 223, 269, 357, 381, 403
BsgI	GTGCAG	2 cut(s)	130, 380
Bsh1236I	CGCG	3 cut(s)	152, 268, 455
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	385, 534
BsiEI	CGRYCG	1 cut(s)	156
BslI	CCNNNNNNNGG	1 cut(s)	470
BsmAI	GTCTC	3 cut(s)	165, 299, 433
BsnI	GGCC	2 cut(s)	385, 534
Bsp143I	GATC	3 cut(s)	68, 81, 180
BspACI	CCGC	8 cut(s)	110, 139, 150, 209, 255, 266, 343, 389
BspANI	GGCC	2 cut(s)	385, 534
BspCNI	CTCAG	3 cut(s)	181, 315, 449
BspFNI	CGCG	3 cut(s)	152, 268, 455
BspPI	GGATC	2 cut(s)	76, 175
BspQI	GCTCTTC	5 cut(s)	122, 221, 238, 355, 372
BssECI	CCNNGG	3 cut(s)	53, 380, 529
BssMI	GATC	3 cut(s)	68, 81, 180
BssT1I	CCWWGG	1 cut(s)	529
Bst2UI	CCWGG	2 cut(s)	55, 382
Bst4CI	ACNGT	4 cut(s)	157, 291, 425, 473
Bst6I	CTCTTC	6 cut(s)	122, 221, 238, 355, 372, 534
BstDEI	CTNAG	3 cut(s)	168, 302, 436
BstFNI	CGCG	3 cut(s)	152, 268, 455
BstHHI	GCGC	2 cut(s)	270, 457
BstKTI	GATC	3 cut(s)	71, 84, 183
BstMAI	GTCTC	3 cut(s)	165, 299, 433
BstMBI	GATC	3 cut(s)	68, 81, 180
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	6 cut(s)	112, 141, 211, 257, 345, 391
BstNI	CCWGG	2 cut(s)	55, 382
BstSCI	CCNGG	2 cut(s)	53, 380
BstUI	CGCG	3 cut(s)	152, 268, 455
BstV1I	GCAGC	8 cut(s)	124, 131, 153, 223, 269, 357, 381, 403
BstV2I	GAAGAC	1 cut(s)	218
BsuRI	GGCC	2 cut(s)	385, 534
BtsIMutI	CAGTG	1 cut(s)	287
CfoI	GCGC	2 cut(s)	270, 457
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	1 cut(s)	581
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	3 cut(s)	168, 302, 436
DpnI	GATC	3 cut(s)	70, 83, 182
DpnII	GATC	3 cut(s)	68, 81, 180
DraIII	CACNNNGTG	1 cut(s)	583
Eam1104I	CTCTTC	6 cut(s)	122, 221, 238, 355, 372, 534
EarI	CTCTTC	6 cut(s)	122, 221, 238, 355, 372, 534
Eco130I	CCWWGG	1 cut(s)	529
Eco147I	AGGCCT	1 cut(s)	534
EcoRI	GAATTC	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	53, 380
EcoT14I	CCWWGG	1 cut(s)	529
ErhI	CCWWGG	1 cut(s)	529
FaeI	CATG	1 cut(s)	584
FaiI	YATR	1 cut(s)	582
FatI	CATG	1 cut(s)	580
Fnu4HI	GCNGC	8 cut(s)	113, 142, 145, 212, 258, 346, 392, 395
Fsp4HI	GCNGC	8 cut(s)	113, 142, 145, 212, 258, 346, 392, 395
GlaI	GCGC	2 cut(s)	269, 456
GluI	GCNGC	8 cut(s)	113, 142, 145, 212, 258, 346, 392, 395
HaeIII	GGCC	2 cut(s)	385, 534
HhaI	GCGC	2 cut(s)	270, 457
Hin1II	CATG	1 cut(s)	584
Hin6I	GCGC	2 cut(s)	268, 455
HinP1I	GCGC	2 cut(s)	268, 455
HinfI	GANTC	6 cut(s)	5, 172, 306, 332, 440, 586
HphI	GGTGA	1 cut(s)	23
Hpy188I	TCNGA	4 cut(s)	63, 171, 305, 439
HpyAV	CCTTC	2 cut(s)	478, 531
HpyCH4III	ACNGT	4 cut(s)	157, 291, 425, 473
HpyCH4V	TGCA	3 cut(s)	147, 397, 569
HpyF10VI	GCNNNNNNNGC	6 cut(s)	112, 141, 211, 257, 345, 391
HpyF3I	CTNAG	3 cut(s)	168, 302, 436
Hsp92II	CATG	1 cut(s)	584
HspAI	GCGC	2 cut(s)	268, 455
Kzo9I	GATC	3 cut(s)	68, 81, 180
LguI	GCTCTTC	5 cut(s)	122, 221, 238, 355, 372
LpnPI	CCDG	7 cut(s)	40, 48, 67, 367, 394, 433, 575
Lsp1109I	GCAGC	8 cut(s)	124, 131, 153, 223, 269, 357, 381, 403
LweI	GCATC	1 cut(s)	599
MaeIII	GTNAC	1 cut(s)	556
MalI	GATC	3 cut(s)	70, 83, 182
MboI	GATC	3 cut(s)	68, 81, 180
MboII	GAAGA	8 cut(s)	109, 208, 218, 225, 342, 359, 551, 613
MluCI	AATT	4 cut(s)	15, 27, 72, 76
MlyI	GAGTC	4 cut(s)	166, 300, 326, 434
MroXI	GAANNNNTTC	1 cut(s)	543
MseI	TTAA	2 cut(s)	75, 479
MspA1I	CMGCKG	2 cut(s)	144, 394
MspR9I	CCNGG	2 cut(s)	55, 382
MvaI	CCWGG	2 cut(s)	55, 382
MvnI	CGCG	3 cut(s)	152, 268, 455
MwoI	GCNNNNNNNGC	6 cut(s)	112, 141, 211, 257, 345, 391
NdeII	GATC	3 cut(s)	68, 81, 180
NlaIII	CATG	1 cut(s)	584
PceI	AGGCCT	1 cut(s)	534
PciSI	GCTCTTC	5 cut(s)	122, 221, 238, 355, 372
PdmI	GAANNNNTTC	1 cut(s)	543
PfeI	GAWTC	2 cut(s)	5, 586
PflFI	GACNNNGTC	2 cut(s)	157, 309
PkrI	GCNGC	8 cut(s)	114, 143, 146, 213, 259, 347, 393, 396
PleI	GAGTC	4 cut(s)	166, 300, 326, 434
PpsI	GAGTC	4 cut(s)	166, 300, 326, 434
PshBI	ATTAAT	1 cut(s)	75
Psp6I	CCWGG	2 cut(s)	53, 380
PspGI	CCWGG	2 cut(s)	53, 380
PsyI	GACNNNGTC	2 cut(s)	157, 309
PvuII	CAGCTG	2 cut(s)	144, 394
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
SapI	GCTCTTC	5 cut(s)	122, 221, 238, 355, 372
SaqAI	TTAA	2 cut(s)	75, 479
SatI	GCNGC	8 cut(s)	113, 142, 145, 212, 258, 346, 392, 395
Sau3AI	GATC	3 cut(s)	68, 81, 180
SchI	GAGTC	4 cut(s)	166, 300, 326, 434
ScrFI	CCNGG	2 cut(s)	55, 382
SfaNI	GCATC	1 cut(s)	599
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	4 cut(s)	15, 27, 72, 76
SseBI	AGGCCT	1 cut(s)	534
SsiI	CCGC	8 cut(s)	110, 139, 150, 209, 255, 266, 343, 389
StuI	AGGCCT	1 cut(s)	534
StyD4I	CCNGG	2 cut(s)	53, 380
StyI	CCWWGG	1 cut(s)	529
TaaI	ACNGT	4 cut(s)	157, 291, 425, 473
TaqI	TCGA	2 cut(s)	80, 179
TasI	AATT	4 cut(s)	15, 27, 72, 76
TfiI	GAWTC	2 cut(s)	5, 586
Tru1I	TTAA	2 cut(s)	75, 479
Tru9I	TTAA	2 cut(s)	75, 479
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	8 cut(s)	112, 141, 144, 211, 257, 345, 391, 394
TspDTI	ATGAA	1 cut(s)	29
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	294
Tth111I	GACNNNGTC	2 cut(s)	157, 309
VspI	ATTAAT	1 cut(s)	75
XapI	RAATTY	2 cut(s)	15, 27
XmnI	GAANNNNTTC	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.