Rroxscaffold_5G00354810

Structural maintenance of chromosomes protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0003625
Physical Location & Seq
Forward (+)
33349178 .. 33352355
3178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00354810.1

Sequence Viewer

Length: 390 bp
ATGAAAGAAAGAAAGGGAGATCCGTCCAAACCGTCGACATTTTGGAGAAACCTCAAGACAAGCACCCAACTACTCTCTCTTCTCCATTCAGAAAATCATATTGTGGTAAATGTCCTGGTAGATATGGGAAGTGTTGAAAGGCAAGTTCTTGTTAAAAATTATGAGGGACAGGAAGTTGCTTTTGACCAGAGGATCCCCAATTTGAAGACAGTTCTTCTTCTCAATCGGCAACATAGACCTGCTCGTCTCTGTGCTAATTATGACTATGAAGTGAGTAGTCTTAGAAGACTAGCATCAGGTGTACAAGAAGAAGCTCAGCAGTGCAAGAGGAGAAAAAGGGATGAAGAAGACAAACCTCGAGATCTTAAAGAGGAACTATACAAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_23 SMC_N

Protein Analysis

129

Amino Acids

15.13

Weight (kDa)

9.33

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 243
Acc36I ACCTGC 1 cut(s) 247
AccI GTMKAC 1 cut(s) 35
AclWI GGATC 3 cut(s) 14, 187, 200
AfaI GTAC 1 cut(s) 303
AgsI TTSAA 2 cut(s) 137, 205
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 3 cut(s) 14, 187, 200
Ama87I CYCGRG 1 cut(s) 357
AvaI CYCGRG 1 cut(s) 357
BamHI GGATCC 1 cut(s) 192
BbsI GAAGAC 3 cut(s) 212, 292, 354
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 290
BfuAI ACCTGC 1 cut(s) 247
BglII AGATCT 1 cut(s) 361
BlpI GCTNAGC 1 cut(s) 315
Bme1390I CCNGG 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 357
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 302
BpiI GAAGAC 3 cut(s) 212, 292, 354
Bpu1102I GCTNAGC 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 38
BseBI CCWGG 1 cut(s) 116
BseGI GGATG 1 cut(s) 346
BseMII CTCAG 1 cut(s) 329
BseRI GAGGAG 1 cut(s) 343
BsiHKCI CYCGRG 1 cut(s) 357
BslFI GGGAC 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 251
BsmBI CGTCTC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 180
BsoBI CYCGRG 1 cut(s) 357
Bsp1407I TGTACA 1 cut(s) 301
Bsp143I GATC 3 cut(s) 19, 192, 361
Bsp1720I GCTNAGC 1 cut(s) 315
BspCNI CTCAG 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 194
BspMI ACCTGC 1 cut(s) 247
BspPI GGATC 3 cut(s) 14, 187, 200
BsrGI TGTACA 1 cut(s) 301
BssMI GATC 3 cut(s) 19, 192, 361
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 33, 211
Bst6I CTCTTC 1 cut(s) 84
BstAUI TGTACA 1 cut(s) 301
BstDEI CTNAG 2 cut(s) 281, 315
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 3 cut(s) 22, 195, 364
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 3 cut(s) 19, 192, 361
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstV2I GAAGAC 3 cut(s) 212, 292, 354
BstX2I RGATCY 3 cut(s) 19, 192, 361
BstYI RGATCY 3 cut(s) 19, 192, 361
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 326
BtsIMutI CAGTG 1 cut(s) 326
BveI ACCTGC 1 cut(s) 247
Csp6I GTAC 1 cut(s) 302
CviJI RGCY 1 cut(s) 314
CviKI_1 RGCY 1 cut(s) 314
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 2 cut(s) 281, 315
DpnI GATC 3 cut(s) 21, 194, 363
DpnII GATC 3 cut(s) 19, 192, 361
DrdI GACNNNNNNGTC 1 cut(s) 243
DseDI GACNNNNNNGTC 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 251
FaiI YATR 7 cut(s) 99, 125, 162, 234, 261, 267, 379
FaqI GGGAC 1 cut(s) 180
FblI GTMKAC 1 cut(s) 35
FokI GGATG 1 cut(s) 353
FspBI CTAG 1 cut(s) 290
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
Hpy166II GTNNAC 2 cut(s) 36, 302
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 2 cut(s) 55, 359
Hpy8I GTNNAC 2 cut(s) 36, 302
Hpy99I CGWCG 1 cut(s) 37
HpyCH4III ACNGT 2 cut(s) 33, 211
HpyCH4V TGCA 1 cut(s) 324
HpyF3I CTNAG 2 cut(s) 281, 315
Kzo9I GATC 3 cut(s) 19, 192, 361
LpnPI CCDG 6 cut(s) 101, 128, 155, 200, 252, 282
LweI GCATC 1 cut(s) 302
MaeI CTAG 1 cut(s) 290
MalI GATC 3 cut(s) 21, 194, 363
MboI GATC 3 cut(s) 19, 192, 361
MboII GAAGA 8 cut(s) 71, 206, 209, 217, 297, 320, 356, 359
MflI RGATCY 3 cut(s) 19, 192, 361
MluCI AATT 3 cut(s) 157, 199, 256
MnlI CCTC 6 cut(s) 62, 157, 183, 321, 364, 366
MseI TTAA 2 cut(s) 153, 366
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
NdeII GATC 3 cut(s) 19, 192, 361
NlaIV GGNNCC 1 cut(s) 194
PaeR7I CTCGAG 1 cut(s) 357
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 194
PsuI RGATCY 3 cut(s) 19, 192, 361
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
SalI GTCGAC 1 cut(s) 34
SaqAI TTAA 2 cut(s) 153, 366
Sau3AI GATC 3 cut(s) 19, 192, 361
ScrFI CCNGG 1 cut(s) 116
SetI ASST 5 cut(s) 54, 241, 301, 316, 358
SfaNI GCATC 1 cut(s) 302
Sfr274I CTCGAG 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 357
SmlI CTYRAG 2 cut(s) 53, 357
SmoI CTYRAG 2 cut(s) 53, 357
Sse9I AATT 3 cut(s) 157, 199, 256
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 33, 211
TaqI TCGA 2 cut(s) 35, 358
TasI AATT 3 cut(s) 157, 199, 256
TatI WGTACW 1 cut(s) 301
Tru1I TTAA 2 cut(s) 153, 366
Tru9I TTAA 2 cut(s) 153, 366
TscAI CASTG 1 cut(s) 326
TspDTI ATGAA 3 cut(s) 17, 282, 357
TspGWI ACGGA 1 cut(s) 12
TspRI CASTG 1 cut(s) 326
XhoI CTCGAG 1 cut(s) 357
XmiI GTMKAC 1 cut(s) 35
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.