Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039486.1

Orthogroup ID

OG0003625

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 883

Gene Structure 883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039486.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggccgagccaatcgccggccgtcgccaccgttccaaagccggaatcgtccagaaaatccggttggagaacttcatgtgccacagtagcttgcagatcgagctcggtgattgggtcaatttcatcaccggtcaaaatgggagtggtaaaagtgcaatactgacggctctgtgtgtcgcatttgggtcccgagctaaggagactcaaagagggtctacattaaaagatttcataaaaactggttgcagttacgctgttgtccatgttgaattgaaaaatcaaggggaggatgctttcaagcctgatatttatggggatgtgataattatagagcgcaagatttctggagcttcaaacgccactgttttgaaggatcatcaaggtttacattccttgcttatgttatgt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_23 SMC_N

Protein Analysis

136

Amino Acids

14.86

Weight (kDa)

8.98

Isoelectric Point (pI)

22.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07660 AT5G61460
fragaria_vesca	FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291
malus_domestica	MD07G1252300.v1.1
prunus_persica	Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1
pyrus_communis	pycom07g22470
rosa_chinensis	RchiOBHm_Chr1g0342881 RchiOBHm_Chr1g0374131 RchiOBHm_Chr4g0408871 RchiOBHm_Chr7g0243831
rosa_laevigata	RLG00000026760
rosa_multiflora	Rmu_sc0008430.1_g000005 Rmu_sc0020614.1_g000004 Rmu_sc0028209.1_g000001 Rmu_sc0039486.1_g000001 Rmu_ssc0000450.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283700 Rroxscaffold_5G00354810
rosa_rugosa	Rorug01G0380900.1
rosa_samantha	Rh1AG391800 Rh1BG355900 Rh1DG386500 Rh4DG145500 Rh4DG209300
rosa_wichuraiana	Rw1G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	215
AclWI	GGATC	1 cut(s)	381
AcoI	YGGCCR	2 cut(s)	3, 19
AfiI	CCNNNNNNNGG	2 cut(s)	17, 196
AgeI	ACCGGT	1 cut(s)	128
AgsI	TTSAA	5 cut(s)	269, 274, 298, 354, 370
AjuI	GAANNNNNNNTTGG	2 cut(s)	47, 79
AluBI	AGCT	4 cut(s)	90, 103, 194, 350
AluI	AGCT	4 cut(s)	90, 103, 194, 350
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	381
Ama87I	CYCGRG	1 cut(s)	189
AoxI	GGCC	2 cut(s)	3, 19
AsiGI	ACCGGT	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	118, 119
AvaI	CYCGRG	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BceAI	ACGGC	2 cut(s)	6, 180
BcoDI	GTCTC	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	186
BmeT110I	CYCGRG	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	2 cut(s)	187, 188
BmsI	GCATC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	195
BsaWI	WCCGGW	2 cut(s)	60, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 196
Bse118I	RCCGGY	2 cut(s)	17, 128
Bse1I	ACTGG	1 cut(s)	244
BseGI	GGATG	2 cut(s)	295, 322
BseLI	CCNNNNNNNGG	2 cut(s)	17, 196
BseNI	ACTGG	1 cut(s)	244
BseX3I	CGGCCG	1 cut(s)	19
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	2 cut(s)	5, 21
BshTI	ACCGGT	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	189
BsiSI	CCGG	4 cut(s)	18, 42, 61, 129
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	2 cut(s)	17, 196
BsmAI	GTCTC	1 cut(s)	194
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	5, 21
BsoBI	CYCGRG	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	96, 373
BspANI	GGCC	2 cut(s)	5, 21
BspLI	GGNNCC	2 cut(s)	187, 188
BspPI	GGATC	1 cut(s)	381
BsrFI	RCCGGY	2 cut(s)	17, 128
BsrI	ACTGG	1 cut(s)	244
BssAI	RCCGGY	2 cut(s)	17, 128
BssMI	GATC	2 cut(s)	96, 373
Bst4CI	ACNGT	3 cut(s)	32, 86, 364
BstC8I	GCNNGC	2 cut(s)	19, 92
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	295, 322
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	2 cut(s)	99, 376
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	2 cut(s)	96, 373
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	3 cut(s)	87, 100, 356
BstZI	CGGCCG	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	5, 21
BtsCI	GGATG	2 cut(s)	295, 322
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	2 cut(s)	19, 92
CfoI	GCGC	1 cut(s)	336
Cfr10I	RCCGGY	2 cut(s)	17, 128
Cfr13I	GGNCC	1 cut(s)	186
CspAI	ACCGGT	1 cut(s)	128
CviAII	CATG	2 cut(s)	76, 263
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	98, 375
DpnII	GATC	2 cut(s)	96, 373
EaeI	YGGCCR	2 cut(s)	3, 19
EagI	CGGCCG	1 cut(s)	19
Ecl136II	GAGCTC	1 cut(s)	103
EclXI	CGGCCG	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	186
Eco52I	CGGCCG	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	189
EcoICRI	GAGCTC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	2 cut(s)	79, 266
FaiI	YATR	7 cut(s)	77, 233, 264, 312, 329, 401, 406
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	2 cut(s)	75, 262
FblI	GTMKAC	1 cut(s)	215
FokI	GGATG	2 cut(s)	302, 329
FriOI	GRGCYC	1 cut(s)	105
GlaI	GCGC	1 cut(s)	335
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	2 cut(s)	5, 21
HapII	CCGG	4 cut(s)	18, 42, 61, 129
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	2 cut(s)	79, 266
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HinfI	GANTC	2 cut(s)	45, 202
HpaII	CCGG	4 cut(s)	18, 42, 61, 129
HphI	GGTGA	2 cut(s)	118, 119
Hpy166II	GTNNAC	2 cut(s)	216, 386
Hpy188III	TCNNGA	3 cut(s)	52, 189, 345
Hpy8I	GTNNAC	2 cut(s)	216, 386
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	364
HpyCH4III	ACNGT	3 cut(s)	32, 86, 364
HpyCH4V	TGCA	3 cut(s)	94, 155, 246
HpyF10VI	GCNNNNNNNGC	3 cut(s)	87, 100, 356
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	79, 266
HspAI	GCGC	1 cut(s)	334
KflI	GGGWCCC	1 cut(s)	186
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Kzo9I	GATC	2 cut(s)	96, 373
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	8 cut(s)	31, 55, 65, 74, 142, 225, 315, 330
LweI	GCATC	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	2 cut(s)	98, 375
MboI	GATC	2 cut(s)	96, 373
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	3 cut(s)	118, 269, 324
MlyI	GAGTC	1 cut(s)	196
MmeI	TCCRAC	1 cut(s)	45
MnlI	CCTC	2 cut(s)	203, 280
MroNI	GCCGGC	1 cut(s)	17
MseI	TTAA	1 cut(s)	221
MspI	CCGG	4 cut(s)	18, 42, 61, 129
MwoI	GCNNNNNNNGC	3 cut(s)	87, 100, 356
NaeI	GCCGGC	1 cut(s)	19
NdeII	GATC	2 cut(s)	96, 373
NgoMIV	GCCGGC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	79, 266
NlaIV	GGNNCC	2 cut(s)	187, 188
NmeAIII	GCCGAG	1 cut(s)	31
PdiI	GCCGGC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	45
PinAI	ACCGGT	1 cut(s)	128
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PpuMI	RGGWCCY	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	187, 188
PspPI	GGNCC	1 cut(s)	186
PspPPI	RGGWCCY	1 cut(s)	186
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	221
Sau3AI	GATC	2 cut(s)	96, 373
Sau96I	GGNCC	1 cut(s)	186
SchI	GAGTC	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	5 cut(s)	92, 105, 196, 352, 385
SfaNI	GCATC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	186
Sse9I	AATT	3 cut(s)	118, 269, 324
SstI	GAGCTC	1 cut(s)	105
TaaI	ACNGT	3 cut(s)	32, 86, 364
TaqI	TCGA	1 cut(s)	99
TasI	AATT	3 cut(s)	118, 269, 324
TfiI	GAWTC	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	1 cut(s)	367
TspDTI	ATGAA	3 cut(s)	64, 112, 220
TspRI	CASTG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	186
XmiI	GTMKAC	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.