Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003625

Physical Location & Seq

Genomic Coordinates Reverse (-)

40378556 .. 40381189

Gene Structure 2634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG209300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAATCTCGCCAAATTCACTTTAGAATTCACCCTGTTCATTTACTCAAACCCAGGTATCAGAGCAGATCGATTCATTCGATCCCCAAAACAAACAGACCCAAGCCACCGCAGCTCTTCGCTCTCCCCCAAGCCACCGCAGCTGCACCGCGACCGTGTCTCTACCTCAGACTCCCTCGATCCACAAAAAAAACAGACCCAAGCCACCGCAGCTCTTCGCTCTCCCCCCAAGCCACCGCAGCTACACCGCACCTCTGTTCCAAACCTCCACTATGTCTCTACCTCAGACTCCCTCGATCCCCAAAACAAACAGACTCAAACCACCGCAGCTCTTCGCTCGTCTTTGCTCTTCGCTCTCCCCCCAGGCCACCGCAGCTGCACCGCGCCTCTGTTCCAAGCCTCCACCGTGTCTCTACCTCAGACTCCCTCTGGTCCGCGCCTCTGCCTCTAAACGGTCTTATCACTGACAACTTGCAGTGCAGTAAGCTAAGCCTTAAACATACCATACATGCTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.25

Weight (kDa)

11.44

Isoelectric Point (pI)

73.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07660 AT5G61460
fragaria_vesca	FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291
malus_domestica	MD07G1252300.v1.1
prunus_persica	Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1
pyrus_communis	pycom07g22470
rosa_chinensis	RchiOBHm_Chr1g0342881 RchiOBHm_Chr1g0374131 RchiOBHm_Chr4g0408871 RchiOBHm_Chr7g0243831
rosa_laevigata	RLG00000026760
rosa_multiflora	Rmu_sc0008430.1_g000005 Rmu_sc0020614.1_g000004 Rmu_sc0028209.1_g000001 Rmu_sc0039486.1_g000001 Rmu_ssc0000450.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283700 Rroxscaffold_5G00354810
rosa_rugosa	Rorug01G0380900.1
rosa_samantha	Rh1AG391800 Rh1BG355900 Rh1DG386500 Rh4DG145500 Rh4DG209300
rosa_wichuraiana	Rw1G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	151, 384, 437
AclWI	GGATC	3 cut(s)	76, 174, 291
AcsI	RAATTY	2 cut(s)	15, 27
AfiI	CCNNNNNNNGG	1 cut(s)	452
AjnI	CCWGG	2 cut(s)	53, 362
AluBI	AGCT	7 cut(s)	115, 143, 213, 242, 330, 376, 487
AluI	AGCT	7 cut(s)	115, 143, 213, 242, 330, 376, 487
Alw26I	GTCTC	3 cut(s)	164, 281, 415
AlwI	GGATC	3 cut(s)	76, 174, 291
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	8 cut(s)	112, 140, 143, 210, 239, 327, 373, 376
ApoI	RAATTY	2 cut(s)	15, 27
AspLEI	GCGC	2 cut(s)	386, 439
AspS9I	GGNCC	1 cut(s)	432
AsuHPI	GGTGA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	432
BaeI	ACNNNNGTAYC	2 cut(s)	41, 74
BbvI	GCAGC	8 cut(s)	124, 130, 152, 222, 251, 339, 363, 385
BciT130I	CCWGG	2 cut(s)	55, 364
BcoDI	GTCTC	3 cut(s)	164, 281, 415
BisI	GCNGC	8 cut(s)	113, 141, 144, 211, 240, 328, 374, 377
BlpI	GCTNAGC	1 cut(s)	488
BlsI	GCNGC	8 cut(s)	114, 142, 145, 212, 241, 329, 375, 378
Bme1390I	CCNGG	2 cut(s)	55, 364
Bme18I	GGWCC	1 cut(s)	432
BmgT120I	GGNCC	1 cut(s)	432
BmrFI	CCNGG	2 cut(s)	55, 364
Bpu1102I	GCTNAGC	1 cut(s)	488
Bsa29I	ATCGAT	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	53, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	452
BseBI	CCWGG	2 cut(s)	55, 364
BseCI	ATCGAT	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	53, 362
BseLI	CCNNNNNNNGG	1 cut(s)	452
BseMII	CTCAG	3 cut(s)	181, 298, 432
BseXI	GCAGC	8 cut(s)	124, 130, 152, 222, 251, 339, 363, 385
BsgI	GTGCAG	3 cut(s)	129, 362, 499
Bsh1236I	CGCG	3 cut(s)	151, 384, 437
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	367
BshVI	ATCGAT	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	452
BsmAI	GTCTC	3 cut(s)	164, 281, 415
BsnI	GGCC	1 cut(s)	367
Bsp143I	GATC	4 cut(s)	68, 81, 179, 296
Bsp1720I	GCTNAGC	1 cut(s)	488
BspANI	GGCC	1 cut(s)	367
BspCNI	CTCAG	3 cut(s)	180, 297, 431
BspDI	ATCGAT	1 cut(s)	71
BspFNI	CGCG	3 cut(s)	151, 384, 437
BspPI	GGATC	3 cut(s)	76, 174, 291
BspQI	GCTCTTC	4 cut(s)	122, 220, 337, 354
BssECI	CCNNGG	2 cut(s)	53, 362
BssMI	GATC	4 cut(s)	68, 81, 179, 296
Bst2UI	CCWGG	2 cut(s)	55, 364
Bst4CI	ACNGT	3 cut(s)	156, 407, 455
Bst6I	CTCTTC	4 cut(s)	122, 220, 337, 354
BstDEI	CTNAG	4 cut(s)	167, 284, 418, 488
BstFNI	CGCG	3 cut(s)	151, 384, 437
BstHHI	GCGC	2 cut(s)	386, 439
BstKTI	GATC	4 cut(s)	71, 84, 182, 299
BstMAI	GTCTC	3 cut(s)	164, 281, 415
BstMBI	GATC	4 cut(s)	68, 81, 179, 296
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	5 cut(s)	112, 140, 210, 239, 373
BstNI	CCWGG	2 cut(s)	55, 364
BstNSI	RCATGY	1 cut(s)	512
BstSCI	CCNGG	2 cut(s)	53, 362
BstUI	CGCG	3 cut(s)	151, 384, 437
BstV1I	GCAGC	8 cut(s)	124, 130, 152, 222, 251, 339, 363, 385
Bsu15I	ATCGAT	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	367
BsuTUI	ATCGAT	1 cut(s)	71
BtsI	GCAGTG	1 cut(s)	482
BtsIMutI	CAGTG	2 cut(s)	462, 482
CfoI	GCGC	2 cut(s)	386, 439
Cfr13I	GGNCC	1 cut(s)	432
ClaI	ATCGAT	1 cut(s)	71
CviAII	CATG	1 cut(s)	509
DdeI	CTNAG	4 cut(s)	167, 284, 418, 488
DpnI	GATC	4 cut(s)	70, 83, 181, 298
DpnII	GATC	4 cut(s)	68, 81, 179, 296
Eam1104I	CTCTTC	4 cut(s)	122, 220, 337, 354
EarI	CTCTTC	4 cut(s)	122, 220, 337, 354
Eco47I	GGWCC	1 cut(s)	432
EcoRI	GAATTC	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	53, 362
FaeI	CATG	1 cut(s)	512
FaiI	YATR	4 cut(s)	274, 501, 506, 510
FatI	CATG	1 cut(s)	508
Fnu4HI	GCNGC	8 cut(s)	113, 141, 144, 211, 240, 328, 374, 377
Fsp4HI	GCNGC	8 cut(s)	113, 141, 144, 211, 240, 328, 374, 377
GlaI	GCGC	2 cut(s)	385, 438
GluI	GCNGC	8 cut(s)	113, 141, 144, 211, 240, 328, 374, 377
HaeIII	GGCC	1 cut(s)	367
HhaI	GCGC	2 cut(s)	386, 439
Hin1II	CATG	1 cut(s)	512
Hin6I	GCGC	2 cut(s)	384, 437
HinP1I	GCGC	2 cut(s)	384, 437
HinfI	GANTC	6 cut(s)	5, 73, 171, 288, 314, 422
HphI	GGTGA	1 cut(s)	23
Hpy188I	TCNGA	4 cut(s)	63, 170, 287, 421
HpyCH4III	ACNGT	3 cut(s)	156, 407, 455
HpyCH4V	TGCA	4 cut(s)	146, 379, 475, 480
HpyF10VI	GCNNNNNNNGC	5 cut(s)	112, 140, 210, 239, 373
HpyF3I	CTNAG	4 cut(s)	167, 284, 418, 488
Hsp92II	CATG	1 cut(s)	512
HspAI	GCGC	2 cut(s)	384, 437
Kzo9I	GATC	4 cut(s)	68, 81, 179, 296
LguI	GCTCTTC	4 cut(s)	122, 220, 337, 354
LpnPI	CCDG	6 cut(s)	40, 48, 67, 349, 376, 415
Lsp1109I	GCAGC	8 cut(s)	124, 130, 152, 222, 251, 339, 363, 385
MalI	GATC	4 cut(s)	70, 83, 181, 298
MboI	GATC	4 cut(s)	68, 81, 179, 296
MboII	GAAGA	4 cut(s)	109, 207, 324, 341
MluCI	AATT	2 cut(s)	15, 27
MlyI	GAGTC	4 cut(s)	165, 282, 308, 416
MseI	TTAA	1 cut(s)	495
MspA1I	CMGCKG	2 cut(s)	143, 376
MspR9I	CCNGG	2 cut(s)	55, 364
MvaI	CCWGG	2 cut(s)	55, 364
MvnI	CGCG	3 cut(s)	151, 384, 437
MwoI	GCNNNNNNNGC	5 cut(s)	112, 140, 210, 239, 373
NdeII	GATC	4 cut(s)	68, 81, 179, 296
NlaIII	CATG	1 cut(s)	512
NspI	RCATGY	1 cut(s)	512
PciSI	GCTCTTC	4 cut(s)	122, 220, 337, 354
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PfeI	GAWTC	2 cut(s)	5, 73
PflFI	GACNNNGTC	1 cut(s)	156
PkrI	GCNGC	8 cut(s)	114, 142, 145, 212, 241, 329, 375, 378
PleI	GAGTC	4 cut(s)	165, 282, 308, 416
PpsI	GAGTC	4 cut(s)	165, 282, 308, 416
Psp6I	CCWGG	2 cut(s)	53, 362
PspGI	CCWGG	2 cut(s)	53, 362
PspPI	GGNCC	1 cut(s)	432
PsyI	GACNNNGTC	1 cut(s)	156
PvuII	CAGCTG	2 cut(s)	143, 376
SapI	GCTCTTC	4 cut(s)	122, 220, 337, 354
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	8 cut(s)	113, 141, 144, 211, 240, 328, 374, 377
Sau3AI	GATC	4 cut(s)	68, 81, 179, 296
Sau96I	GGNCC	1 cut(s)	432
SchI	GAGTC	4 cut(s)	165, 282, 308, 416
ScrFI	CCNGG	2 cut(s)	55, 364
SinI	GGWCC	1 cut(s)	432
Sse9I	AATT	2 cut(s)	15, 27
StyD4I	CCNGG	2 cut(s)	53, 362
TaaI	ACNGT	3 cut(s)	156, 407, 455
TaqI	TCGA	4 cut(s)	71, 80, 178, 295
TasI	AATT	2 cut(s)	15, 27
TfiI	GAWTC	2 cut(s)	5, 73
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	2 cut(s)	469, 482
TseI	GCWGC	8 cut(s)	112, 140, 143, 210, 239, 327, 373, 376
TspDTI	ATGAA	2 cut(s)	29, 65
TspRI	CASTG	2 cut(s)	469, 482
Tth111I	GACNNNGTC	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	432
XapI	RAATTY	2 cut(s)	15, 27
XceI	RCATGY	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.