Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003625

Physical Location & Seq

Genomic Coordinates Reverse (-)

62277819 .. 62289302

Gene Structure 11484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G034380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3045 bp

ATGGCCGAGCCAATCGCCGGCCGTCGCCACCGTTCCAAAGCCGGAATCGTCCAGAAAATCCGGTTGGAGAACTTCATGTGCCACAGTAGCTTGCAGATCGAGCTCGGCGATTGGGTCAATTTCATCACCGGCCAAAATGGGAGTGGTAAAAGTGCAATACTGACGGCTCTGTGTGTCGCATTTGGGTCCCGAGCTAAGGAGACTCAAAGAGGGTCTACATTAAAAGATTTCATAAAAACTGGGGAGGATGCTTTCAAGCCTGATATTTATGGGGATGTGATAATTATAGAGCGCAAGATTTCTGGAGCTTCAAACGCCACTGTTTTGAAGGATCATCAAGGAAGAAAGGTTGCTAGTCGGAAGGAGGATCTCCGGGAGCTAATTGAACATTTTAGTATTGATGTTGAGAATCCATGTGTAATAATGGGCCAAGACAGAAGCAGAGAGTTTTTGCATTCTGGGAATGACAAAGATAAATTTAAGTTCTTTTACAAGGCCACACTTCTGCAGCAAGTTGAAGAGCTTTTGCAAGACATTGAGAAACAGTTGGAGAAGGCAAATGTTGTTTTACATGAAAAGATAAAAAACATGGAGCACATTGAAGAAATATCTCAACAAGCGAAGCAGCTAAAAAAGAAGCTTGCTTGGTCATGGGTATATGATGTAGACAGGCAACTCCAGCAAAAGAATGCAAAAATTGGAAAGCTGAAAAATCGTGTACCTCTTTGTCAAGCTAAAATTGATCAGTTTAGAGGTGAAGTGGAGAAACTTAGCCAATGCTATACCTTGAAGAAATCTGAGATTGCAAGCATGGTGGAAAAGACCGCTGAAGTTAGGAGAATGAAGGACGAATTGCGACAGTCGCTAGCATCGGCTACAAAAGAGAAGCTTAAGCTAGAAGAAGAATATGGCCGCAAAACTAACTACATCCAGAAATTGACAAACTCTGTTAGGTCTCTTCAGCAACAGATTCAGGATGCTGAGGAGCAGCATGCCAGAAATACACAGGCAGAAGAATCTGCAATGGAGGAAAAGCTGAAAGAACTGCATAATGAGGTCGCTACTATTGAATCAATGCTTGCAAGGTTGCAGGAAGAAGACAGTGCCTTATCAATAAGTGTACACAAGACAATTACTGAAATTGGAAAATTAACTGAAATGATTCAAAGCAGAGAGAAGGAATGTCAAAAATACTCCAATAAAGTCCGCGAGGTTTTGAGAAATCAAAGCAACAAGGTCACAGCTTTTGGTGGAGATAGAGTGATGGACCTTCTACGTATAATTGAGAGGAATCATCAGAGATTCAAAAGCCCTCCAATTGGTCCGATTGGTGCCCATTTGACTTTGAATAATGGAGATGAATGGGCTAGAACTGTTGAAAATGCTGTAGGAAGGCTGCTCAATGCTTTCATTGTAACAAATCATAAAGACTCTCAACTTCTCAGAACATGTGCAAGGGAAGCAAGCTATAATCACCTTCAGATTATCATATATGACTTTTCATTACCAAGGTTGAATATTCCACCTCACATGCTTCCACAAACAAGACACCCAACTACTCTTTCTCTTCTCCATTCTGAAAATCATACTGTGGTAAATGTCCTGGTAGATATGGGAAGTGTTGAAAGGCAAGTTCTTGTTAAAACATATGAGGAGGGGAAGGAAGTTGCTTTTGACCAGAGGATCCCCAATCTGAAGGAGGTCTACACTTATGATGGGCGAAAGATGTTTTCGCGTGGTTCTGTCCAGACAGTTCTTCCTCCCATTAGGCATGATAGACCTGCTCGTCTCTGTGCTAATTATGATGATCAAATCAATGAGCTTAAAACATCAGCATCAGCTGTACAAAAAGAAGCTGAGGAGTGCAGGACGAGAAAAAGGGAAGAAGAAGACAAACTTTGGAATCTCAAAGAAAAACACCAAAGTGTGAAGAGGAGGCGTATGAATGCTGACCGTGATTTGGCATCTAAGAGACTAGCTATTCAAGACAGTGCATATGATGCGGAAGCCAGTACATCACCTGCATCAACTGTTGATGACCTTCATCAAGACATTTTGTCCAAAGGAGATTCAAGAGAGGAAATGTCGCTGAAAACCTTTGAAGTCAGAATTAGTGAAGCTGTGGCAAAGACCAATGATCTTAAAGTAACATTTGAGAATCTATGTGAGTCAGCAAAAGGAGACATTGATGCCTTTGAGAAAGCAGAGAGAGATTTGATGGAGATAGAAACAAAACTAGGTTCTGCACAAACGGAGAAGCTTCATTATGAAGGTCTAATGAAGACCAAGGTCCTTCATGAAATCAATGACGCTGAAAAACAATATAAAGAGCTTGAGCATCACCGCGAGAAAGGCTTCAATCTCTGTCCTGAAAGTGAAATTACAGCTTTGGGTGATTGGGATGGTAGCACTCCAGAACAACTCAGTGCCCAATTAACCAGGCTGAATCAGAGACTTCAGCGAGAGAGTGAGAGATGCACTGAATCCATTGATGAGCTCCGAATGTCATATGAGAGAAAAGAACGTAAGATTTTAAGAAAACAGAAAACATACAGAGCTTTTCGAGAAAAGTTGAATGCTTGCCAGAAAGCCCTAAAGTTGCGAAGTACAAAGTTCCAGAGAAATAAAGATTTACTAAAGCGCCAGATGACGTGGCGATTTAATTCTCATCTGGGAAGGAAAGGGTTCAGTGGGAAGATTAAGGTCAGTTATGAGGAGAGAACCCTTTCAATTGAGGTAAAGATGCCCCAGGATTCATCAAGCAGCACTGTTCGCGACACTAGAGGGCTTTCAGGTGGAGAACGCTCCTTCTCAACATTGTGCTTTGCGCTGGCTCTTCATGATATGACTGAAGCCCCATTTAGAGCTATGGATGAGTTTGATGTATTTATGGATGCTGTAAGTCGGAAAATCAGCCTTGATACTCTTGTTGAGTTTGCATTGGCGCAAGGATCCCAGTGGGTACTTATCACCCCTCATGATATCAGCATGGTGAAAAATGGGGATAGGATAAAGAAGCAGCAAATGGCGGCTCCTCGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_23 SMC_N

Protein Analysis

1014

Amino Acids

116.54

Weight (kDa)

8.85

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_N	PF02463	17 - 1007	3.9e-21	RecF/RecN/SMC N terminal domain
AAA_15	PF13175	17 - 365	1.7e-08	AAA ATPase domain
AAA_23	PF13476	19 - 214	1.1e-20	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07660 AT5G61460
fragaria_vesca	FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291
malus_domestica	MD07G1252300.v1.1
prunus_persica	Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1
pyrus_communis	pycom07g22470
rosa_chinensis	RchiOBHm_Chr1g0342881 RchiOBHm_Chr1g0374131 RchiOBHm_Chr4g0408871 RchiOBHm_Chr7g0243831
rosa_laevigata	RLG00000026760
rosa_multiflora	Rmu_sc0008430.1_g000005 Rmu_sc0020614.1_g000004 Rmu_sc0028209.1_g000001 Rmu_sc0039486.1_g000001 Rmu_ssc0000450.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283700 Rroxscaffold_5G00354810
rosa_rugosa	Rorug01G0380900.1
rosa_samantha	Rh1AG391800 Rh1BG355900 Rh1DG386500 Rh4DG145500 Rh4DG209300
rosa_wichuraiana	Rw1G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2029
AasI	GACNNNNNNGTC	1 cut(s)	1785
Acc36I	ACCTGC	2 cut(s)	1789, 2029
AccB1I	GGYRCC	1 cut(s)	1331
AccI	GTMKAC	3 cut(s)	215, 666, 1704
AccII	CGCG	4 cut(s)	1209, 1735, 2346, 2775
AciI	CCGC	6 cut(s)	825, 913, 1207, 2003, 2344, 3029
AclWI	GGATC	6 cut(s)	339, 375, 1678, 1691, 2946, 2959
AcoI	YGGCCR	4 cut(s)	3, 19, 130, 910
AcsI	RAATTY	1 cut(s)	476
AcuI	CTGAAG	6 cut(s)	849, 944, 1463, 1715, 2441, 2871
AfaI	GTAC	6 cut(s)	720, 1122, 1845, 2014, 2608, 2964
AfiI	CCNNNNNNNGG	4 cut(s)	17, 196, 1319, 1960
AflII	CTTAAG	1 cut(s)	890
AflIII	ACRYGT	1 cut(s)	1448
AhdI	GACNNNNNGTC	1 cut(s)	2056
AjiI	CACGTC	1 cut(s)	2652
AjnI	CCWGG	3 cut(s)	1602, 2438, 2748
AjuI	GAANNNNNNNTTGG	4 cut(s)	47, 79, 1546, 1578
AleI	CACNNNNGTG	1 cut(s)	1923
Alw21I	GWGCWC	3 cut(s)	105, 597, 2499
Alw26I	GTCTC	6 cut(s)	194, 960, 1793, 1966, 2175, 2446
AlwI	GGATC	6 cut(s)	339, 375, 1678, 1691, 2946, 2959
Ama87I	CYCGRG	1 cut(s)	189
AoxI	GGCC	6 cut(s)	3, 19, 130, 427, 495, 910
ApeKI	GCWGC	6 cut(s)	508, 625, 988, 1396, 2763, 3019
ApoI	RAATTY	1 cut(s)	476
Asp700I	GAANNNNTTC	4 cut(s)	1161, 2354, 2684, 2725
AspLEI	GCGC	4 cut(s)	294, 2643, 2830, 2947
AspS9I	GGNCC	5 cut(s)	186, 427, 1267, 1322, 2290
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	8 cut(s)	118, 767, 1466, 2010, 2333, 2405, 2962, 3004
AsuNHI	GCTAGC	1 cut(s)	865
AvaI	CYCGRG	1 cut(s)	189
AvaII	GGWCC	4 cut(s)	186, 1267, 1322, 2290
BaeGI	GKGCMC	2 cut(s)	1336, 2431
BaeI	ACNNNNGTAYC	2 cut(s)	2913, 2946
BamHI	GGATCC	2 cut(s)	1683, 2951
BanI	GGYRCC	1 cut(s)	1331
BanII	GRGCYC	2 cut(s)	105, 2499
BarI	GAAGNNNNNNTAC	2 cut(s)	1688, 1720
BbsI	GAAGAC	3 cut(s)	1104, 1896, 2288
Bbv12I	GWGCWC	3 cut(s)	105, 597, 2499
BbvCI	CCTCAGC	2 cut(s)	981, 1857
BbvI	GCAGC	6 cut(s)	520, 637, 1000, 1383, 2775, 3031
BccI	CCATC	4 cut(s)	1258, 1709, 2212, 2396
BceAI	ACGGC	2 cut(s)	6, 180
BciT130I	CCWGG	3 cut(s)	1604, 2440, 2750
BclI	TGATCA	2 cut(s)	742, 1807
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	6 cut(s)	194, 960, 1793, 1966, 2175, 2446
BfaI	CTAG	7 cut(s)	354, 866, 896, 1368, 1976, 2237, 2781
BfmI	CTRYAG	2 cut(s)	506, 1386
BfoI	RGCGCY	1 cut(s)	2644
BfrI	CTTAAG	1 cut(s)	890
BfuAI	ACCTGC	2 cut(s)	1789, 2029
BisI	GCNGC	8 cut(s)	509, 626, 913, 989, 1397, 2764, 3020, 3030
BlsI	GCNGC	8 cut(s)	510, 627, 914, 990, 1398, 2765, 3021, 3031
Bme1390I	CCNGG	4 cut(s)	374, 1604, 2440, 2750
Bme18I	GGWCC	4 cut(s)	186, 1267, 1322, 2290
BmeRI	GACNNNNNGTC	1 cut(s)	2056
BmeT110I	CYCGRG	1 cut(s)	189
BmgBI	CACGTC	1 cut(s)	2652
BmgT120I	GGNCC	5 cut(s)	186, 427, 1267, 1322, 2290
BmiI	GGNNCC	6 cut(s)	187, 188, 1333, 1685, 2953, 3033
BmrFI	CCNGG	4 cut(s)	374, 1604, 2440, 2750
BmrI	ACTGGG	2 cut(s)	249, 2950
BmtI	GCTAGC	1 cut(s)	869
BmuI	ACTGGG	2 cut(s)	249, 2950
BoxI	GACNNNNGTC	1 cut(s)	2288
BpiI	GAAGAC	3 cut(s)	1104, 1896, 2288
BpmI	CTGGAG	3 cut(s)	324, 662, 2397
Bpu10I	CCTNAGC	3 cut(s)	195, 981, 1857
BpuEI	CTTGAG	1 cut(s)	2354
BpuMI	CCSGG	1 cut(s)	374
BsaAI	YACGTR	1 cut(s)	1277
BsaI	GGTCTC	1 cut(s)	960
BsaJI	CCNNGG	3 cut(s)	1508, 2286, 2748
BsaWI	WCCGGW	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	1245, 1275
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 196, 1319, 1960
Bse118I	RCCGGY	2 cut(s)	17, 128
Bse1I	ACTGG	3 cut(s)	244, 2010, 2956
Bse3DI	GCAATG	1 cut(s)	1029
BseBI	CCWGG	3 cut(s)	1604, 2440, 2750
BseDI	CCNNGG	3 cut(s)	1508, 2286, 2748
BseGI	GGATG	7 cut(s)	253, 280, 927, 982, 2407, 2878, 2899
BseLI	CCNNNNNNNGG	4 cut(s)	17, 196, 1319, 1960
BseMI	GCAATG	1 cut(s)	1029
BseMII	CTCAG	5 cut(s)	789, 972, 1456, 1848, 2437
BseNI	ACTGG	3 cut(s)	244, 2010, 2956
BseRI	GAGGAG	6 cut(s)	998, 1667, 1874, 1948, 2729, 3024
BseSI	GKGCMC	2 cut(s)	1336, 2431
BseX3I	CGGCCG	1 cut(s)	19
BseXI	GCAGC	6 cut(s)	520, 637, 1000, 1383, 2775, 3031
BsgI	GTGCAG	2 cut(s)	1885, 2229
Bsh1236I	CGCG	4 cut(s)	1209, 1735, 2346, 2775
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	6 cut(s)	5, 21, 132, 429, 497, 912
BshNI	GGYRCC	1 cut(s)	1331
BsiEI	CGRYCG	1 cut(s)	22
BsiHKAI	GWGCWC	3 cut(s)	105, 597, 2499
BsiHKCI	CYCGRG	1 cut(s)	189
BsiSI	CCGG	5 cut(s)	18, 42, 61, 129, 373
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	4 cut(s)	17, 196, 1319, 1960
BsmAI	GTCTC	6 cut(s)	194, 960, 1793, 1966, 2175, 2446
BsmBI	CGTCTC	1 cut(s)	1793
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	4 cut(s)	454, 694, 1951, 2581
BsnI	GGCC	6 cut(s)	5, 21, 132, 429, 497, 912
Bso31I	GGTCTC	1 cut(s)	960
BsoBI	CYCGRG	1 cut(s)	189
Bsp1286I	GDGCHC	5 cut(s)	105, 597, 1336, 2431, 2499
Bsp1407I	TGTACA	2 cut(s)	1120, 1843
Bsp143I	GATC	8 cut(s)	96, 331, 367, 742, 1683, 1807, 2137, 2951
Bsp68I	TCGCGA	1 cut(s)	2775
BspACI	CCGC	6 cut(s)	825, 913, 1207, 2003, 2344, 3029
BspANI	GGCC	6 cut(s)	5, 21, 132, 429, 497, 912
BspCNI	CTCAG	5 cut(s)	790, 973, 1455, 1849, 2436
BspFNI	CGCG	4 cut(s)	1209, 1735, 2346, 2775
BspHI	TCATGA	3 cut(s)	2296, 2839, 2977
BspLI	GGNNCC	6 cut(s)	187, 188, 1333, 1685, 2953, 3033
BspMAI	CTGCAG	1 cut(s)	510
BspMI	ACCTGC	2 cut(s)	1789, 2029
BspOI	GCTAGC	1 cut(s)	869
BspPI	GGATC	6 cut(s)	339, 375, 1678, 1691, 2946, 2959
BspQI	GCTCTTC	2 cut(s)	513, 2841
BspT107I	GGYRCC	1 cut(s)	1331
BspTI	CTTAAG	1 cut(s)	890
BspTNI	GGTCTC	1 cut(s)	960
BsrDI	GCAATG	1 cut(s)	1029
BsrFI	RCCGGY	2 cut(s)	17, 128
BsrGI	TGTACA	2 cut(s)	1120, 1843
BsrI	ACTGG	3 cut(s)	244, 2010, 2956
BssAI	RCCGGY	2 cut(s)	17, 128
BssECI	CCNNGG	3 cut(s)	1508, 2286, 2748
BssMI	GATC	8 cut(s)	96, 331, 367, 742, 1683, 1807, 2137, 2951
BssT1I	CCWWGG	2 cut(s)	1508, 2286
Bst2UI	CCWGG	3 cut(s)	1604, 2440, 2750
Bst6I	CTCTTC	5 cut(s)	513, 963, 1572, 1925, 2841
BstAFI	CTTAAG	1 cut(s)	890
BstAPI	GCANNNNNTGC	1 cut(s)	2000
BstAUI	TGTACA	2 cut(s)	1120, 1843
BstBAI	YACGTR	1 cut(s)	1277
BstDEI	CTNAG	8 cut(s)	195, 770, 798, 981, 1442, 1857, 1968, 2423
BstF5I	GGATG	7 cut(s)	253, 280, 927, 982, 2407, 2878, 2899
BstFNI	CGCG	4 cut(s)	1209, 1735, 2346, 2775
BstH2I	RGCGCY	1 cut(s)	2644
BstHHI	GCGC	4 cut(s)	294, 2643, 2830, 2947
BstKTI	GATC	8 cut(s)	99, 334, 370, 745, 1686, 1810, 2140, 2954
BstMAI	GTCTC	6 cut(s)	194, 960, 1793, 1966, 2175, 2446
BstMBI	GATC	8 cut(s)	96, 331, 367, 742, 1683, 1807, 2137, 2951
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	9 cut(s)	87, 100, 314, 679, 862, 1460, 2000, 2352, 2772
BstNI	CCWGG	3 cut(s)	1604, 2440, 2750
BstNSI	RCATGY	3 cut(s)	995, 1452, 1534
BstPAI	GACNNNNGTC	1 cut(s)	2288
BstSCI	CCNGG	4 cut(s)	372, 1602, 2438, 2748
BstSFI	CTRYAG	2 cut(s)	506, 1386
BstSLI	GKGCMC	2 cut(s)	1336, 2431
BstSNI	TACGTA	1 cut(s)	1277
BstUI	CGCG	4 cut(s)	1209, 1735, 2346, 2775
BstV1I	GCAGC	6 cut(s)	520, 637, 1000, 1383, 2775, 3031
BstV2I	GAAGAC	3 cut(s)	1104, 1896, 2288
BstX2I	RGATCY	3 cut(s)	367, 1683, 2951
BstYI	RGATCY	3 cut(s)	367, 1683, 2951
BstZI	CGGCCG	1 cut(s)	19
BsuRI	GGCC	6 cut(s)	5, 21, 132, 429, 497, 912
BtrI	CACGTC	1 cut(s)	2652
BtsCI	GGATG	7 cut(s)	253, 280, 927, 982, 2407, 2878, 2899
BtsIMutI	CAGTG	8 cut(s)	318, 1108, 1996, 2431, 2478, 2695, 2766, 2963
BtuMI	TCGCGA	1 cut(s)	2775
BveI	ACCTGC	2 cut(s)	1789, 2029
CciI	TCATGA	3 cut(s)	2296, 2839, 2977
CfoI	GCGC	4 cut(s)	294, 2643, 2830, 2947
Cfr10I	RCCGGY	2 cut(s)	17, 128
Cfr13I	GGNCC	5 cut(s)	186, 427, 1267, 1322, 2290
CseI	GACGC	1 cut(s)	2318
Csp6I	GTAC	6 cut(s)	719, 1121, 1844, 2013, 2607, 2963
CspCI	CAANNNNNGTGG	2 cut(s)	795, 830
CviQI	GTAC	6 cut(s)	719, 1121, 1844, 2013, 2607, 2963
DdeI	CTNAG	8 cut(s)	195, 770, 798, 981, 1442, 1857, 1968, 2423
DpnI	GATC	8 cut(s)	98, 333, 369, 744, 1685, 1809, 2139, 2953
DpnII	GATC	8 cut(s)	96, 331, 367, 742, 1683, 1807, 2137, 2951
DrdI	GACNNNNNNGTC	1 cut(s)	1785
DriI	GACNNNNNGTC	1 cut(s)	2056
DseDI	GACNNNNNNGTC	1 cut(s)	1785
EaeI	YGGCCR	4 cut(s)	3, 19, 130, 910
EagI	CGGCCG	1 cut(s)	19
Eam1104I	CTCTTC	5 cut(s)	513, 963, 1572, 1925, 2841
Eam1105I	GACNNNNNGTC	1 cut(s)	2056
EarI	CTCTTC	5 cut(s)	513, 963, 1572, 1925, 2841
Ecl136II	GAGCTC	2 cut(s)	103, 2497
EclXI	CGGCCG	1 cut(s)	19
Eco105I	TACGTA	1 cut(s)	1277
Eco130I	CCWWGG	2 cut(s)	1508, 2286
Eco24I	GRGCYC	2 cut(s)	105, 2499
Eco31I	GGTCTC	1 cut(s)	960
Eco32I	GATATC	1 cut(s)	2983
Eco47I	GGWCC	4 cut(s)	186, 1267, 1322, 2290
Eco52I	CGGCCG	1 cut(s)	19
Eco53kI	GAGCTC	2 cut(s)	103, 2497
Eco57I	CTGAAG	6 cut(s)	849, 944, 1463, 1715, 2441, 2871
Eco88I	CYCGRG	1 cut(s)	189
EcoICRI	GAGCTC	2 cut(s)	103, 2497
EcoO109I	RGGNCCY	2 cut(s)	186, 2290
EcoRII	CCWGG	3 cut(s)	1602, 2438, 2748
EcoRV	GATATC	1 cut(s)	2983
EcoT14I	CCWWGG	2 cut(s)	1508, 2286
EcoT38I	GRGCYC	2 cut(s)	105, 2499
ErhI	CCWWGG	2 cut(s)	1508, 2286
Esp3I	CGTCTC	1 cut(s)	1793
FalI	AAGNNNNNCTT	4 cut(s)	873, 905, 1881, 1913
FaqI	GGGAC	1 cut(s)	172
FauNDI	CATATG	3 cut(s)	1648, 1996, 2509
FbaI	TGATCA	2 cut(s)	742, 1807
FblI	GTMKAC	3 cut(s)	215, 666, 1704
Fnu4HI	GCNGC	8 cut(s)	509, 626, 913, 989, 1397, 2764, 3020, 3030
FokI	GGATG	7 cut(s)	260, 287, 914, 989, 2414, 2885, 2906
FriOI	GRGCYC	2 cut(s)	105, 2499
Fsp4HI	GCNGC	8 cut(s)	509, 626, 913, 989, 1397, 2764, 3020, 3030
FspBI	CTAG	7 cut(s)	354, 866, 896, 1368, 1976, 2237, 2781
GlaI	GCGC	4 cut(s)	293, 2642, 2829, 2946
GluI	GCNGC	8 cut(s)	509, 626, 913, 989, 1397, 2764, 3020, 3030
GsuI	CTGGAG	3 cut(s)	324, 662, 2397
HaeII	RGCGCY	1 cut(s)	2644
HaeIII	GGCC	6 cut(s)	5, 21, 132, 429, 497, 912
HapII	CCGG	5 cut(s)	18, 42, 61, 129, 373
HgaI	GACGC	1 cut(s)	2318
HhaI	GCGC	4 cut(s)	294, 2643, 2830, 2947
Hin6I	GCGC	4 cut(s)	292, 2641, 2828, 2945
HinP1I	GCGC	4 cut(s)	292, 2641, 2828, 2945
HindIII	AAGCTT	3 cut(s)	638, 887, 2258
HpaII	CCGG	5 cut(s)	18, 42, 61, 129, 373
HphI	GGTGA	8 cut(s)	118, 767, 1466, 2010, 2333, 2405, 2962, 3004
Hpy166II	GTNNAC	6 cut(s)	216, 667, 719, 1121, 1123, 1705
Hpy8I	GTNNAC	6 cut(s)	216, 667, 719, 1121, 1123, 1705
Hpy99I	CGWCG	1 cut(s)	27
HpyCH4IV	ACGT	3 cut(s)	1276, 2524, 2651
HpyF10VI	GCNNNNNNNGC	9 cut(s)	87, 100, 314, 679, 862, 1460, 2000, 2352, 2772
HpyF3I	CTNAG	8 cut(s)	195, 770, 798, 981, 1442, 1857, 1968, 2423
HpySE526I	ACGT	3 cut(s)	1276, 2524, 2651
HspAI	GCGC	4 cut(s)	292, 2641, 2828, 2945
KflI	GGGWCCC	1 cut(s)	186
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Ksp22I	TGATCA	2 cut(s)	742, 1807
Kzo9I	GATC	8 cut(s)	96, 331, 367, 742, 1683, 1807, 2137, 2951
LguI	GCTCTTC	2 cut(s)	513, 2841
LmnI	GCTCC	7 cut(s)	305, 376, 592, 985, 2502, 2810, 3037
Lsp1109I	GCAGC	6 cut(s)	520, 637, 1000, 1383, 2775, 3031
MaeI	CTAG	7 cut(s)	354, 866, 896, 1368, 1976, 2237, 2781
MaeII	ACGT	3 cut(s)	1276, 2524, 2651
MaeIII	GTNAC	3 cut(s)	1237, 1414, 2146
MalI	GATC	8 cut(s)	98, 333, 369, 744, 1685, 1809, 2139, 2953
MboI	GATC	8 cut(s)	96, 331, 367, 742, 1683, 1807, 2137, 2951
MfeI	CAATTG	2 cut(s)	1317, 2730
MflI	RGATCY	3 cut(s)	367, 1683, 2951
MhlI	GDGCHC	5 cut(s)	105, 597, 1336, 2431, 2499
MlyI	GAGTC	3 cut(s)	196, 1424, 2177
MmeI	TCCRAC	4 cut(s)	45, 338, 528, 2885
MroNI	GCCGGC	1 cut(s)	17
MroXI	GAANNNNTTC	4 cut(s)	1161, 2354, 2684, 2725
MslI	CAYNNNNRTG	1 cut(s)	1923
MspA1I	CMGCKG	2 cut(s)	827, 1841
MspCI	CTTAAG	1 cut(s)	890
MspI	CCGG	5 cut(s)	18, 42, 61, 129, 373
MspR9I	CCNGG	4 cut(s)	374, 1604, 2440, 2750
MunI	CAATTG	2 cut(s)	1317, 2730
Mva1269I	GAATGC	4 cut(s)	454, 694, 1951, 2581
MvaI	CCWGG	3 cut(s)	1604, 2440, 2750
MvnI	CGCG	4 cut(s)	1209, 1735, 2346, 2775
MwoI	GCNNNNNNNGC	9 cut(s)	87, 100, 314, 679, 862, 1460, 2000, 2352, 2772
NaeI	GCCGGC	1 cut(s)	19
NciI	CCSGG	1 cut(s)	374
NdeI	CATATG	3 cut(s)	1648, 1996, 2509
NdeII	GATC	8 cut(s)	96, 331, 367, 742, 1683, 1807, 2137, 2951
NgoMIV	GCCGGC	1 cut(s)	17
NheI	GCTAGC	1 cut(s)	865
NlaIV	GGNNCC	6 cut(s)	187, 188, 1333, 1685, 2953, 3033
NmeAIII	GCCGAG	2 cut(s)	31, 84
NmuCI	GTSAC	1 cut(s)	1237
NruI	TCGCGA	1 cut(s)	2775
NspI	RCATGY	3 cut(s)	995, 1452, 1534
OliI	CACNNNNGTG	1 cut(s)	1923
PaeI	GCATGC	1 cut(s)	995
PagI	TCATGA	3 cut(s)	2296, 2839, 2977
PaqCI	CACCTGC	1 cut(s)	2029
PciI	ACATGT	1 cut(s)	1448
PciSI	GCTCTTC	2 cut(s)	513, 2841
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	4 cut(s)	454, 694, 1951, 2581
PdiI	GCCGGC	1 cut(s)	19
PdmI	GAANNNNTTC	4 cut(s)	1161, 2354, 2684, 2725
PfoI	TCCNGGA	1 cut(s)	372
PkrI	GCNGC	8 cut(s)	510, 627, 914, 990, 1398, 2765, 3021, 3031
PleI	GAGTC	3 cut(s)	196, 1424, 2176
PpsI	GAGTC	3 cut(s)	196, 1424, 2176
Ppu21I	YACGTR	1 cut(s)	1277
PpuMI	RGGWCCY	2 cut(s)	186, 2290
PscI	ACATGT	1 cut(s)	1448
PshAI	GACNNNNGTC	1 cut(s)	2288
Psp124BI	GAGCTC	2 cut(s)	105, 2499
Psp5II	RGGWCCY	2 cut(s)	186, 2290
Psp6I	CCWGG	3 cut(s)	1602, 2438, 2748
PspGI	CCWGG	3 cut(s)	1602, 2438, 2748
PspN4I	GGNNCC	6 cut(s)	187, 188, 1333, 1685, 2953, 3033
PspPI	GGNCC	5 cut(s)	186, 427, 1267, 1322, 2290
PspPPI	RGGWCCY	2 cut(s)	186, 2290
PstI	CTGCAG	1 cut(s)	510
PsuI	RGATCY	3 cut(s)	367, 1683, 2951
PvuII	CAGCTG	1 cut(s)	1841
RruI	TCGCGA	1 cut(s)	2775
RsaI	GTAC	6 cut(s)	720, 1122, 1845, 2014, 2608, 2964
RsaNI	GTAC	6 cut(s)	719, 1121, 1844, 2013, 2607, 2963
RseI	CAYNNNNRTG	1 cut(s)	1923
SacI	GAGCTC	2 cut(s)	105, 2499
SapI	GCTCTTC	2 cut(s)	513, 2841
SatI	GCNGC	8 cut(s)	509, 626, 913, 989, 1397, 2764, 3020, 3030
Sau3AI	GATC	8 cut(s)	96, 331, 367, 742, 1683, 1807, 2137, 2951
Sau96I	GGNCC	5 cut(s)	186, 427, 1267, 1322, 2290
SchI	GAGTC	3 cut(s)	196, 1424, 2177
ScrFI	CCNGG	4 cut(s)	374, 1604, 2440, 2750
SduI	GDGCHC	5 cut(s)	105, 597, 1336, 2431, 2499
SfcI	CTRYAG	2 cut(s)	506, 1386
SinI	GGWCC	4 cut(s)	186, 1267, 1322, 2290
SmiMI	CAYNNNNRTG	1 cut(s)	1923
SmlI	CTYRAG	2 cut(s)	890, 2333
SmoI	CTYRAG	2 cut(s)	890, 2333
SnaBI	TACGTA	1 cut(s)	1277
SphI	GCATGC	1 cut(s)	995
SsiI	CCGC	6 cut(s)	825, 913, 1207, 2003, 2344, 3029
SspI	AATATT	1 cut(s)	1519
SspMI	CTAG	7 cut(s)	354, 866, 896, 1368, 1976, 2237, 2781
SstI	GAGCTC	2 cut(s)	105, 2499
StyD4I	CCNGG	4 cut(s)	372, 1602, 2438, 2748
StyI	CCWWGG	2 cut(s)	1508, 2286
TaiI	ACGT	3 cut(s)	1279, 2527, 2654
TaqI	TCGA	2 cut(s)	99, 2563
TatI	WGTACW	4 cut(s)	1120, 1843, 2012, 2606
TauI	GCSGC	2 cut(s)	915, 3032
TscAI	CASTG	8 cut(s)	325, 1108, 1996, 2431, 2485, 2695, 2773, 2963
TseFI	GTSAC	1 cut(s)	1237
TseI	GCWGC	6 cut(s)	508, 625, 988, 1396, 2763, 3019
Tsp45I	GTSAC	1 cut(s)	1237
TspGWI	ACGGA	1 cut(s)	2267
TspRI	CASTG	8 cut(s)	325, 1108, 1996, 2431, 2485, 2695, 2773, 2963
Vha464I	CTTAAG	1 cut(s)	890
VpaK11BI	GGWCC	4 cut(s)	186, 1267, 1322, 2290
XapI	RAATTY	1 cut(s)	476
XceI	RCATGY	3 cut(s)	995, 1452, 1534
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XmiI	GTMKAC	3 cut(s)	215, 666, 1704
XmnI	GAANNNNTTC	4 cut(s)	1161, 2354, 2684, 2725
XspI	CTAG	7 cut(s)	354, 866, 896, 1368, 1976, 2237, 2781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.