Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003625

Physical Location & Seq

Genomic Coordinates Forward (+)

62068313 .. 62080730

Gene Structure 12418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG391800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3156 bp

ATGGCCGAGCCAATCGCCGGCAGTCGCCACCGTTCCAAAGCCGGAATCGTCCAGAAAATCCGGTTGGAGAACTTCATGTGCCACAGTAGCTTGCAGATCGAGCTCGGCGATTGGGTCAATTTCATCACCGGTCAAAATGGGAGTGGTAAAAGTGCAATACTGACGGCTCTGTGTGTCGCATTTGGGTCCCGAGCTAAGGAGACTCAAAGAGGGTCTACATTAAAAGATTTCATAAAAACTGGTTGCAGTTACGCTGTTGTCCATGTTGAATTGAAAAATCAAGGGGAGGATGCTTTCAAGCCTGATATTTATGGGGATGTGATAATCATAGAGCGCAAGATTTCTGGAGCTTCAAACGCCACTGTTTTGAAGGATCATCAAGGAAGAAAGGTTGCTAGTCGGAAGGAGGATCTCCGGGAGCTAATTGAACATTTTAGTATTGATGTTGAGAATCCATGTGTAATAATGGGCCAAGACAGAAGCAGAGAGTTTTTGCATTCTGGGAATGACAAAGATAAATTTAAGTTCTTTTACAAGGCCACACTTCTGCAGCAAGTTGAAGAGCTTTTGCAAGACATTGAGAAACAGTTGGAGAAGGCAAATGTTGTTGTTGATCAATTAGAGGGCTCCATAAGACCCATAGAAAGGGAACTTAATGAGTTACATGAAAAGATCAAAAACATGGAGCACATTGAAGAAATATCTCAACAAGCGAAGCAGCTAAAAAAGAAGCTTGCTTGGTCATGGGTATATGATGTAGACAGGCAACTCCAGCAAAAGAATGCAAAAATTGGAAAGCTGAAAAATCGTGTACCTCTTTGTCAAGCTAAAATTGATCAGTTTAGAGGTGAAGTGGAGAAACTTAGCCAATGCTATACCTTGAAGAAATCTGAGATTGCAAGCATGGTGGAAAAGACCGCTGAAGTTAGGAGAATGAAGGACGAATTGCGACAGTCGCTAGCATCGGCTACAAAAGAGAAGCTTAAGCTAGAAGAAGAATATGGCCGCAAAACTAACTACATCCAGAAATTGACAAACTCTGTTAGGTCTCTTCAGCAACAGATTCAGGATGCTGAGGAGCAGCATGCCAGAAATACACAGGCAGAAGAATCTGCAATGGAGGAAAAGCTGAAAGAACTGCATAATGAGGTCGCTACTATTGAATCAATGCTTGCAAGGTTGCAGGAAGAAGACAGTGCCTTATCAATAAGTGTACACAAGACAATTACTGAAATTGGAAAATTAACTGAAATGATTCAAAGCAAAGAGAAGGAATGTCAAAAATACTCCAATAAAGTCCGCGAGGTTCTGAGAAATCAAAGCAACAAGGTCACAGCTTTTGGTGGAGATAGAGTGATGGACCTTCTACGTATAATTGAGAGGAATCATCAGAGATTCAAAAGCCCTCCAATTGGTCCGATTGGTGCCCATTTGACTTTGAATAATGGAGATGAATGGGCTAGAACTGTTGAAAATGCTGTAGGAAGGCTGCTCAATGCTTTCATTGTAACAAATCATAAAGACTCTCAACTTCTCAGAACATGTGCAAGGGAAGCAAGCTATAATCACCTTCAGATTATCATATATGACTTTTCATTACCAAGGTTGAATATTCCACCTCACATGCTTCCACAAACAAGACACCCAACTACTCTTTCTCTTCTCCATTCTGAAAATCATACTGTGGTAAATGTCCTGGTAGATATGGGAAGTGTTGAAAGGCAAGTTCTTGTTAAAACATATGAGGAGGGGAAGGAAGTTGCTTTTGACCAGAGGATCCCCAATCTGAAGGAGGTCTACACTTATGATGGGCGAAAGATGTTTTCGCGTGGTTCTGTCCAGACAGTTCTTCCTCCCGTTAGGCATGATAGACCTGCTCGTCTCTGTGCTAATTATGATGATCAAATCAGTGAGCTTAAAACATCAGCATCAGCTGTACAAAAAGAAGCTGAGGAGTGCAGGACGAGAAAAAGGGAAGAAGAAGACAAACTTTGGAATCTCAAAGAAAAACACCAAAGTGTGAAGAGGAGGCGTACGAATGCTGACCGTGATTTGGCGTCTAAGAGACTAGCTGTTCAAGACAGTGCATATGATGCGGAAGCCAGTACATCACCTGCATCAACTGTTGATGAGCTTCATCAAGACATTTTGAAAGTCCAAGAGGAGATTCAAGAGAGGGAAATGTCGCTGAAAACCTTTGAAGTCAGAATTAGTGAAGCTGTGGCGAAGACCAATGATCTTAAAGTAACATTTGAGAATCTATGTGAGTCAGCAAAAGGAGACATTGATGCCTTTGAGAAAGCAGAGAGAGATTTGATGGAGATAGAAACAAAACTAGGTTCTGCACAAACGGAGAAGCTTCATTATGAAGGTCTAATGAAGACCAAGGTCCTTCATGAAATCAATGACGCTGAAAAACAATATAAAGAGCTTGAGCATCACCGCGAGGACAACTGTAGAAAGGCTTCAATTCTCTGTCCTGAAAGTGAAATTACAGCTTTGGGTGATTGGGATGGTAGCACTCCAGAACAACTCAGTGCCCAATTAACCAGGCTGAATCAGAGACTTCAGCGAGAGAGTGAAAGATGCACTGAATCCATTGATGAGCTCCGAATGTCATATGAGAGAAAAGAACGTAAGATTTTAAGAAAACAGAAAACATACAGAGCTTTTCGAGAAAAGTTGAATGCTTGCCAGAAAGCCCTAAAGTTGCGAAGTACAAAGTTCCAGAGAAATAAAGATTTACTAAAGCGCCAGATGACGTGGCGATTTAATTCTCATCTGGGAAGGAAAGGGTTCAGTGGGAAGATTAAGGTCAGTTATGAGGAGAGAACCCTTTCAATTGAGGTAAAGATGCCCCAGGATTCATCAAGCAGCACTGTTCGCGACACTAGAGGGCTTTCAGGTGGAGAACGCTCCTTCTCAACATTGTGCTTTGCGCTGGCTCTTCATGATATGACTGAAGCCCCATTTAGAGCTATGGATGAGTTTGATGTATTTATGGATGCTGTAAGTCGGAAAATCAGCCTTGATACTCTTGTTGAGTTTGCATTGGCGCAAGGATCCCAGTGGGTACTTATCACCCCTCATGATATCAGCATGGTGAAAAATGGGGATAGGATAAAGAAGCAGCAAATGGCGGCTCCTCGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_23 SMC_N

Protein Analysis

1051

Amino Acids

120.7

Weight (kDa)

8.55

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_N	PF02463	17 - 1044	6.3e-24	RecF/RecN/SMC N terminal domain
AAA_23	PF13476	19 - 245	3.4e-23	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07660 AT5G61460
fragaria_vesca	FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291
malus_domestica	MD07G1252300.v1.1
prunus_persica	Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1
pyrus_communis	pycom07g22470
rosa_chinensis	RchiOBHm_Chr1g0342881 RchiOBHm_Chr1g0374131 RchiOBHm_Chr4g0408871 RchiOBHm_Chr7g0243831
rosa_laevigata	RLG00000026760
rosa_multiflora	Rmu_sc0008430.1_g000005 Rmu_sc0020614.1_g000004 Rmu_sc0028209.1_g000001 Rmu_sc0039486.1_g000001 Rmu_ssc0000450.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283700 Rroxscaffold_5G00354810
rosa_rugosa	Rorug01G0380900.1
rosa_samantha	Rh1AG391800 Rh1BG355900 Rh1DG386500 Rh4DG145500 Rh4DG209300
rosa_wichuraiana	Rw1G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2122
AasI	GACNNNNNNGTC	1 cut(s)	1878
Acc36I	ACCTGC	2 cut(s)	1882, 2122
AccB1I	GGYRCC	1 cut(s)	1424
AccI	GTMKAC	3 cut(s)	215, 759, 1797
AccII	CGCG	4 cut(s)	1302, 1828, 2445, 2886
AciI	CCGC	6 cut(s)	918, 1006, 1300, 2096, 2443, 3140
AclWI	GGATC	6 cut(s)	381, 417, 1771, 1784, 3057, 3070
AcoI	YGGCCR	2 cut(s)	3, 1003
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	6 cut(s)	942, 1037, 1556, 1808, 2552, 2982
AcyI	GRCGYC	1 cut(s)	2057
AfaI	GTAC	7 cut(s)	813, 1215, 1938, 2035, 2107, 2719, 3075
AfiI	CCNNNNNNNGG	5 cut(s)	17, 196, 645, 1412, 2053
AflII	CTTAAG	1 cut(s)	983
AflIII	ACRYGT	1 cut(s)	1541
AgeI	ACCGGT	1 cut(s)	128
AjiI	CACGTC	1 cut(s)	2763
AjnI	CCWGG	3 cut(s)	1695, 2549, 2859
AjuI	GAANNNNNNNTTGG	6 cut(s)	47, 79, 1639, 1671, 2151, 2183
AleI	CACNNNNGTG	1 cut(s)	2016
Alw21I	GWGCWC	3 cut(s)	105, 690, 2610
Alw26I	GTCTC	6 cut(s)	194, 1053, 1886, 2059, 2274, 2557
AlwI	GGATC	6 cut(s)	381, 417, 1771, 1784, 3057, 3070
Ama87I	CYCGRG	1 cut(s)	189
AoxI	GGCC	4 cut(s)	3, 469, 537, 1003
ApeKI	GCWGC	6 cut(s)	550, 718, 1081, 1489, 2874, 3130
ApoI	RAATTY	1 cut(s)	518
AsiGI	ACCGGT	1 cut(s)	128
Asp700I	GAANNNNTTC	4 cut(s)	1254, 2464, 2795, 2836
AspLEI	GCGC	4 cut(s)	336, 2754, 2941, 3058
AspS9I	GGNCC	5 cut(s)	186, 469, 1360, 1415, 2389
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	8 cut(s)	118, 860, 1559, 2103, 2432, 2516, 3073, 3115
AsuNHI	GCTAGC	1 cut(s)	958
AvaI	CYCGRG	1 cut(s)	189
AvaII	GGWCC	4 cut(s)	186, 1360, 1415, 2389
BaeGI	GKGCMC	2 cut(s)	1429, 2542
BaeI	ACNNNNGTAYC	2 cut(s)	3024, 3057
BamHI	GGATCC	2 cut(s)	1776, 3062
BanI	GGYRCC	1 cut(s)	1424
BanII	GRGCYC	3 cut(s)	105, 629, 2610
BarI	GAAGNNNNNNTAC	4 cut(s)	1781, 1813, 2449, 2481
BbsI	GAAGAC	4 cut(s)	1197, 1989, 2234, 2387
Bbv12I	GWGCWC	3 cut(s)	105, 690, 2610
BbvCI	CCTCAGC	2 cut(s)	1074, 1950
BbvI	GCAGC	6 cut(s)	562, 730, 1093, 1476, 2886, 3142
BccI	CCATC	4 cut(s)	1351, 1802, 2311, 2507
BceAI	ACGGC	1 cut(s)	180
BciT130I	CCWGG	3 cut(s)	1697, 2551, 2861
BclI	TGATCA	3 cut(s)	613, 835, 1900
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	6 cut(s)	194, 1053, 1886, 2059, 2274, 2557
BfaI	CTAG	7 cut(s)	396, 959, 989, 1461, 2069, 2336, 2892
BfmI	CTRYAG	3 cut(s)	548, 1479, 2455
BfoI	RGCGCY	1 cut(s)	2755
BfrI	CTTAAG	1 cut(s)	983
BfuAI	ACCTGC	2 cut(s)	1882, 2122
BisI	GCNGC	8 cut(s)	551, 719, 1006, 1082, 1490, 2875, 3131, 3141
BlsI	GCNGC	8 cut(s)	552, 720, 1007, 1083, 1491, 2876, 3132, 3142
Bme1390I	CCNGG	4 cut(s)	416, 1697, 2551, 2861
Bme18I	GGWCC	4 cut(s)	186, 1360, 1415, 2389
BmeT110I	CYCGRG	1 cut(s)	189
BmgBI	CACGTC	1 cut(s)	2763
BmgT120I	GGNCC	5 cut(s)	186, 469, 1360, 1415, 2389
BmiI	GGNNCC	7 cut(s)	187, 188, 628, 1426, 1778, 3064, 3144
BmrFI	CCNGG	4 cut(s)	416, 1697, 2551, 2861
BmrI	ACTGGG	1 cut(s)	3061
BmtI	GCTAGC	1 cut(s)	962
BmuI	ACTGGG	1 cut(s)	3061
BoxI	GACNNNNGTC	1 cut(s)	2387
BpiI	GAAGAC	4 cut(s)	1197, 1989, 2234, 2387
BpmI	CTGGAG	3 cut(s)	366, 755, 2508
Bpu10I	CCTNAGC	3 cut(s)	195, 1074, 1950
BpuEI	CTTGAG	1 cut(s)	2453
BpuMI	CCSGG	1 cut(s)	416
BsaAI	YACGTR	1 cut(s)	1370
BsaHI	GRCGYC	1 cut(s)	2057
BsaI	GGTCTC	1 cut(s)	1053
BsaJI	CCNNGG	3 cut(s)	1601, 2385, 2859
BsaWI	WCCGGW	2 cut(s)	60, 128
BsaXI	ACNNNNNCTCC	2 cut(s)	1338, 1368
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 196, 645, 1412, 2053
Bse118I	RCCGGY	2 cut(s)	17, 128
Bse1I	ACTGG	3 cut(s)	244, 2103, 3067
Bse3DI	GCAATG	1 cut(s)	1122
BseBI	CCWGG	3 cut(s)	1697, 2551, 2861
BseDI	CCNNGG	3 cut(s)	1601, 2385, 2859
BseGI	GGATG	7 cut(s)	295, 322, 1020, 1075, 2518, 2989, 3010
BseLI	CCNNNNNNNGG	5 cut(s)	17, 196, 645, 1412, 2053
BseMI	GCAATG	1 cut(s)	1122
BseMII	CTCAG	6 cut(s)	882, 1065, 1301, 1549, 1941, 2548
BseNI	ACTGG	3 cut(s)	244, 2103, 3067
BseRI	GAGGAG	7 cut(s)	1091, 1760, 1967, 2041, 2177, 2840, 3135
BseSI	GKGCMC	2 cut(s)	1429, 2542
BseXI	GCAGC	6 cut(s)	562, 730, 1093, 1476, 2886, 3142
BsgI	GTGCAG	2 cut(s)	1978, 2328
Bsh1236I	CGCG	4 cut(s)	1302, 1828, 2445, 2886
BshFI	GGCC	4 cut(s)	5, 471, 539, 1005
BshNI	GGYRCC	1 cut(s)	1424
BshTI	ACCGGT	1 cut(s)	128
BsiHKAI	GWGCWC	3 cut(s)	105, 690, 2610
BsiHKCI	CYCGRG	1 cut(s)	189
BsiSI	CCGG	5 cut(s)	18, 42, 61, 129, 415
BsiWI	CGTACG	1 cut(s)	2033
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	5 cut(s)	17, 196, 645, 1412, 2053
BsmAI	GTCTC	6 cut(s)	194, 1053, 1886, 2059, 2274, 2557
BsmBI	CGTCTC	1 cut(s)	1886
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	4 cut(s)	496, 787, 2044, 2692
BsnI	GGCC	4 cut(s)	5, 471, 539, 1005
Bso31I	GGTCTC	1 cut(s)	1053
BsoBI	CYCGRG	1 cut(s)	189
Bsp1286I	GDGCHC	6 cut(s)	105, 629, 690, 1429, 2542, 2610
Bsp1407I	TGTACA	2 cut(s)	1213, 1936
Bsp68I	TCGCGA	1 cut(s)	2886
BspACI	CCGC	6 cut(s)	918, 1006, 1300, 2096, 2443, 3140
BspANI	GGCC	4 cut(s)	5, 471, 539, 1005
BspCNI	CTCAG	6 cut(s)	883, 1066, 1302, 1548, 1942, 2547
BspFNI	CGCG	4 cut(s)	1302, 1828, 2445, 2886
BspHI	TCATGA	3 cut(s)	2395, 2950, 3088
BspLI	GGNNCC	7 cut(s)	187, 188, 628, 1426, 1778, 3064, 3144
BspMAI	CTGCAG	1 cut(s)	552
BspMI	ACCTGC	2 cut(s)	1882, 2122
BspOI	GCTAGC	1 cut(s)	962
BspPI	GGATC	6 cut(s)	381, 417, 1771, 1784, 3057, 3070
BspQI	GCTCTTC	2 cut(s)	555, 2952
BspT107I	GGYRCC	1 cut(s)	1424
BspTI	CTTAAG	1 cut(s)	983
BspTNI	GGTCTC	1 cut(s)	1053
BsrDI	GCAATG	1 cut(s)	1122
BsrFI	RCCGGY	2 cut(s)	17, 128
BsrGI	TGTACA	2 cut(s)	1213, 1936
BsrI	ACTGG	3 cut(s)	244, 2103, 3067
BssAI	RCCGGY	2 cut(s)	17, 128
BssECI	CCNNGG	3 cut(s)	1601, 2385, 2859
BssNI	GRCGYC	1 cut(s)	2057
BssT1I	CCWWGG	2 cut(s)	1601, 2385
Bst2UI	CCWGG	3 cut(s)	1697, 2551, 2861
Bst6I	CTCTTC	5 cut(s)	555, 1056, 1665, 2018, 2952
BstACI	GRCGYC	1 cut(s)	2057
BstAFI	CTTAAG	1 cut(s)	983
BstAPI	GCANNNNNTGC	1 cut(s)	2093
BstAUI	TGTACA	2 cut(s)	1213, 1936
BstBAI	YACGTR	1 cut(s)	1370
BstDEI	CTNAG	9 cut(s)	195, 863, 891, 1074, 1310, 1535, 1950, 2061, 2534
BstF5I	GGATG	7 cut(s)	295, 322, 1020, 1075, 2518, 2989, 3010
BstFNI	CGCG	4 cut(s)	1302, 1828, 2445, 2886
BstH2I	RGCGCY	1 cut(s)	2755
BstHHI	GCGC	4 cut(s)	336, 2754, 2941, 3058
BstMAI	GTCTC	6 cut(s)	194, 1053, 1886, 2059, 2274, 2557
BstMWI	GCNNNNNNNGC	8 cut(s)	87, 100, 356, 772, 955, 1553, 2093, 2883
BstNI	CCWGG	3 cut(s)	1697, 2551, 2861
BstNSI	RCATGY	3 cut(s)	1088, 1545, 1627
BstPAI	GACNNNNGTC	1 cut(s)	2387
BstSCI	CCNGG	4 cut(s)	414, 1695, 2549, 2859
BstSFI	CTRYAG	3 cut(s)	548, 1479, 2455
BstSLI	GKGCMC	2 cut(s)	1429, 2542
BstSNI	TACGTA	1 cut(s)	1370
BstUI	CGCG	4 cut(s)	1302, 1828, 2445, 2886
BstV1I	GCAGC	6 cut(s)	562, 730, 1093, 1476, 2886, 3142
BstV2I	GAAGAC	4 cut(s)	1197, 1989, 2234, 2387
BstX2I	RGATCY	3 cut(s)	409, 1776, 3062
BstYI	RGATCY	3 cut(s)	409, 1776, 3062
BsuRI	GGCC	4 cut(s)	5, 471, 539, 1005
BtrI	CACGTC	1 cut(s)	2763
BtsCI	GGATG	7 cut(s)	295, 322, 1020, 1075, 2518, 2989, 3010
BtsIMutI	CAGTG	9 cut(s)	360, 1201, 1915, 2089, 2542, 2589, 2806, 2877, 3074
BtuMI	TCGCGA	1 cut(s)	2886
BveI	ACCTGC	2 cut(s)	1882, 2122
CciI	TCATGA	3 cut(s)	2395, 2950, 3088
CfoI	GCGC	4 cut(s)	336, 2754, 2941, 3058
Cfr10I	RCCGGY	2 cut(s)	17, 128
Cfr13I	GGNCC	5 cut(s)	186, 469, 1360, 1415, 2389
CseI	GACGC	2 cut(s)	2046, 2417
Csp6I	GTAC	7 cut(s)	812, 1214, 1937, 2034, 2106, 2718, 3074
CspAI	ACCGGT	1 cut(s)	128
CspCI	CAANNNNNGTGG	2 cut(s)	888, 923
CviQI	GTAC	7 cut(s)	812, 1214, 1937, 2034, 2106, 2718, 3074
DdeI	CTNAG	9 cut(s)	195, 863, 891, 1074, 1310, 1535, 1950, 2061, 2534
DrdI	GACNNNNNNGTC	1 cut(s)	1878
DseDI	GACNNNNNNGTC	1 cut(s)	1878
EaeI	YGGCCR	2 cut(s)	3, 1003
Eam1104I	CTCTTC	5 cut(s)	555, 1056, 1665, 2018, 2952
EarI	CTCTTC	5 cut(s)	555, 1056, 1665, 2018, 2952
Ecl136II	GAGCTC	2 cut(s)	103, 2608
Eco105I	TACGTA	1 cut(s)	1370
Eco130I	CCWWGG	2 cut(s)	1601, 2385
Eco24I	GRGCYC	3 cut(s)	105, 629, 2610
Eco31I	GGTCTC	1 cut(s)	1053
Eco32I	GATATC	1 cut(s)	3094
Eco47I	GGWCC	4 cut(s)	186, 1360, 1415, 2389
Eco53kI	GAGCTC	2 cut(s)	103, 2608
Eco57I	CTGAAG	6 cut(s)	942, 1037, 1556, 1808, 2552, 2982
Eco88I	CYCGRG	1 cut(s)	189
EcoICRI	GAGCTC	2 cut(s)	103, 2608
EcoO109I	RGGNCCY	2 cut(s)	186, 2389
EcoRII	CCWGG	3 cut(s)	1695, 2549, 2859
EcoRV	GATATC	1 cut(s)	3094
EcoT14I	CCWWGG	2 cut(s)	1601, 2385
EcoT38I	GRGCYC	3 cut(s)	105, 629, 2610
ErhI	CCWWGG	2 cut(s)	1601, 2385
Esp3I	CGTCTC	1 cut(s)	1886
FalI	AAGNNNNNCTT	4 cut(s)	966, 998, 1974, 2006
FaqI	GGGAC	1 cut(s)	172
FauNDI	CATATG	3 cut(s)	1741, 2089, 2620
FbaI	TGATCA	3 cut(s)	613, 835, 1900
FblI	GTMKAC	3 cut(s)	215, 759, 1797
Fnu4HI	GCNGC	8 cut(s)	551, 719, 1006, 1082, 1490, 2875, 3131, 3141
FokI	GGATG	7 cut(s)	302, 329, 1007, 1082, 2525, 2996, 3017
FriOI	GRGCYC	3 cut(s)	105, 629, 2610
Fsp4HI	GCNGC	8 cut(s)	551, 719, 1006, 1082, 1490, 2875, 3131, 3141
FspBI	CTAG	7 cut(s)	396, 959, 989, 1461, 2069, 2336, 2892
GlaI	GCGC	4 cut(s)	335, 2753, 2940, 3057
GluI	GCNGC	8 cut(s)	551, 719, 1006, 1082, 1490, 2875, 3131, 3141
GsuI	CTGGAG	3 cut(s)	366, 755, 2508
HaeII	RGCGCY	1 cut(s)	2755
HaeIII	GGCC	4 cut(s)	5, 471, 539, 1005
HapII	CCGG	5 cut(s)	18, 42, 61, 129, 415
HgaI	GACGC	2 cut(s)	2046, 2417
HhaI	GCGC	4 cut(s)	336, 2754, 2941, 3058
Hin1I	GRCGYC	1 cut(s)	2057
Hin6I	GCGC	4 cut(s)	334, 2752, 2939, 3056
HinP1I	GCGC	4 cut(s)	334, 2752, 2939, 3056
HindIII	AAGCTT	3 cut(s)	731, 980, 2357
HpaII	CCGG	5 cut(s)	18, 42, 61, 129, 415
HphI	GGTGA	8 cut(s)	118, 860, 1559, 2103, 2432, 2516, 3073, 3115
Hpy166II	GTNNAC	6 cut(s)	216, 760, 812, 1214, 1216, 1798
Hpy8I	GTNNAC	6 cut(s)	216, 760, 812, 1214, 1216, 1798
HpyCH4IV	ACGT	3 cut(s)	1369, 2635, 2762
HpyF10VI	GCNNNNNNNGC	8 cut(s)	87, 100, 356, 772, 955, 1553, 2093, 2883
HpyF3I	CTNAG	9 cut(s)	195, 863, 891, 1074, 1310, 1535, 1950, 2061, 2534
HpySE526I	ACGT	3 cut(s)	1369, 2635, 2762
Hsp92I	GRCGYC	1 cut(s)	2057
HspAI	GCGC	4 cut(s)	334, 2752, 2939, 3056
KflI	GGGWCCC	1 cut(s)	186
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Ksp22I	TGATCA	3 cut(s)	613, 835, 1900
LguI	GCTCTTC	2 cut(s)	555, 2952
LmnI	GCTCC	8 cut(s)	347, 418, 632, 685, 1078, 2613, 2921, 3148
Lsp1109I	GCAGC	6 cut(s)	562, 730, 1093, 1476, 2886, 3142
MaeI	CTAG	7 cut(s)	396, 959, 989, 1461, 2069, 2336, 2892
MaeII	ACGT	3 cut(s)	1369, 2635, 2762
MaeIII	GTNAC	5 cut(s)	248, 660, 1330, 1507, 2245
MfeI	CAATTG	2 cut(s)	1410, 2841
MflI	RGATCY	3 cut(s)	409, 1776, 3062
MhlI	GDGCHC	6 cut(s)	105, 629, 690, 1429, 2542, 2610
MlyI	GAGTC	3 cut(s)	196, 1517, 2276
MmeI	TCCRAC	4 cut(s)	45, 380, 570, 2996
MroNI	GCCGGC	1 cut(s)	17
MroXI	GAANNNNTTC	4 cut(s)	1254, 2464, 2795, 2836
MslI	CAYNNNNRTG	1 cut(s)	2016
MspA1I	CMGCKG	2 cut(s)	920, 1934
MspCI	CTTAAG	1 cut(s)	983
MspI	CCGG	5 cut(s)	18, 42, 61, 129, 415
MspR9I	CCNGG	4 cut(s)	416, 1697, 2551, 2861
MunI	CAATTG	2 cut(s)	1410, 2841
Mva1269I	GAATGC	4 cut(s)	496, 787, 2044, 2692
MvaI	CCWGG	3 cut(s)	1697, 2551, 2861
MvnI	CGCG	4 cut(s)	1302, 1828, 2445, 2886
MwoI	GCNNNNNNNGC	8 cut(s)	87, 100, 356, 772, 955, 1553, 2093, 2883
NaeI	GCCGGC	1 cut(s)	19
NciI	CCSGG	1 cut(s)	416
NdeI	CATATG	3 cut(s)	1741, 2089, 2620
NgoMIV	GCCGGC	1 cut(s)	17
NheI	GCTAGC	1 cut(s)	958
NlaIV	GGNNCC	7 cut(s)	187, 188, 628, 1426, 1778, 3064, 3144
NmeAIII	GCCGAG	2 cut(s)	31, 84
NmuCI	GTSAC	1 cut(s)	1330
NruI	TCGCGA	1 cut(s)	2886
NspI	RCATGY	3 cut(s)	1088, 1545, 1627
OliI	CACNNNNGTG	1 cut(s)	2016
PaeI	GCATGC	1 cut(s)	1088
PagI	TCATGA	3 cut(s)	2395, 2950, 3088
PaqCI	CACCTGC	1 cut(s)	2122
PciI	ACATGT	1 cut(s)	1541
PciSI	GCTCTTC	2 cut(s)	555, 2952
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	4 cut(s)	496, 787, 2044, 2692
PdiI	GCCGGC	1 cut(s)	19
PdmI	GAANNNNTTC	4 cut(s)	1254, 2464, 2795, 2836
Pfl23II	CGTACG	1 cut(s)	2033
PfoI	TCCNGGA	1 cut(s)	414
PinAI	ACCGGT	1 cut(s)	128
PkrI	GCNGC	8 cut(s)	552, 720, 1007, 1083, 1491, 2876, 3132, 3142
PleI	GAGTC	3 cut(s)	196, 1517, 2275
PpsI	GAGTC	3 cut(s)	196, 1517, 2275
Ppu21I	YACGTR	1 cut(s)	1370
PpuMI	RGGWCCY	2 cut(s)	186, 2389
PscI	ACATGT	1 cut(s)	1541
PshAI	GACNNNNGTC	1 cut(s)	2387
Psp124BI	GAGCTC	2 cut(s)	105, 2610
Psp5II	RGGWCCY	2 cut(s)	186, 2389
Psp6I	CCWGG	3 cut(s)	1695, 2549, 2859
PspGI	CCWGG	3 cut(s)	1695, 2549, 2859
PspLI	CGTACG	1 cut(s)	2033
PspN4I	GGNNCC	7 cut(s)	187, 188, 628, 1426, 1778, 3064, 3144
PspPI	GGNCC	5 cut(s)	186, 469, 1360, 1415, 2389
PspPPI	RGGWCCY	2 cut(s)	186, 2389
PstI	CTGCAG	1 cut(s)	552
PsuI	RGATCY	3 cut(s)	409, 1776, 3062
PvuII	CAGCTG	1 cut(s)	1934
RruI	TCGCGA	1 cut(s)	2886
RsaI	GTAC	7 cut(s)	813, 1215, 1938, 2035, 2107, 2719, 3075
RsaNI	GTAC	7 cut(s)	812, 1214, 1937, 2034, 2106, 2718, 3074
RseI	CAYNNNNRTG	1 cut(s)	2016
SacI	GAGCTC	2 cut(s)	105, 2610
SapI	GCTCTTC	2 cut(s)	555, 2952
SatI	GCNGC	8 cut(s)	551, 719, 1006, 1082, 1490, 2875, 3131, 3141
Sau96I	GGNCC	5 cut(s)	186, 469, 1360, 1415, 2389
SchI	GAGTC	3 cut(s)	196, 1517, 2276
ScrFI	CCNGG	4 cut(s)	416, 1697, 2551, 2861
SduI	GDGCHC	6 cut(s)	105, 629, 690, 1429, 2542, 2610
SfcI	CTRYAG	3 cut(s)	548, 1479, 2455
SinI	GGWCC	4 cut(s)	186, 1360, 1415, 2389
SmiMI	CAYNNNNRTG	1 cut(s)	2016
SmlI	CTYRAG	2 cut(s)	983, 2432
SmoI	CTYRAG	2 cut(s)	983, 2432
SnaBI	TACGTA	1 cut(s)	1370
SphI	GCATGC	1 cut(s)	1088
SsiI	CCGC	6 cut(s)	918, 1006, 1300, 2096, 2443, 3140
SspI	AATATT	1 cut(s)	1612
SspMI	CTAG	7 cut(s)	396, 959, 989, 1461, 2069, 2336, 2892
SstI	GAGCTC	2 cut(s)	105, 2610
StyD4I	CCNGG	4 cut(s)	414, 1695, 2549, 2859
StyI	CCWWGG	2 cut(s)	1601, 2385
TaiI	ACGT	3 cut(s)	1372, 2638, 2765
TaqI	TCGA	2 cut(s)	99, 2674
TatI	WGTACW	4 cut(s)	1213, 1936, 2105, 2717
TauI	GCSGC	2 cut(s)	1008, 3143
TscAI	CASTG	9 cut(s)	367, 1201, 1915, 2089, 2542, 2596, 2806, 2884, 3074
TseFI	GTSAC	1 cut(s)	1330
TseI	GCWGC	6 cut(s)	550, 718, 1081, 1489, 2874, 3130
Tsp45I	GTSAC	1 cut(s)	1330
TspGWI	ACGGA	1 cut(s)	2366
TspRI	CASTG	9 cut(s)	367, 1201, 1915, 2089, 2542, 2596, 2806, 2884, 3074
Vha464I	CTTAAG	1 cut(s)	983
VpaK11BI	GGWCC	4 cut(s)	186, 1360, 1415, 2389
XapI	RAATTY	1 cut(s)	518
XceI	RCATGY	3 cut(s)	1088, 1545, 1627
XmiI	GTMKAC	3 cut(s)	215, 759, 1797
XmnI	GAANNNNTTC	4 cut(s)	1254, 2464, 2795, 2836
XspI	CTAG	7 cut(s)	396, 959, 989, 1461, 2069, 2336, 2892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.