Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003625

Physical Location & Seq

Genomic Coordinates Forward (+)

29000929 .. 29005699

Gene Structure 4771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG145500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCGACTACCTCAAAGCTGTTCTGCTGGCTCCTCAACAATTTCTACCAAGGAAAGAGTTCAAGCATTTTTACCATCAGAATCACAGGGATTCCTAAATGTCCTGGCTGGGAATGTTCTTCTATTCTCATTAGCAATCGAGTATGTCTATGACTGCGGTGGAGACATTACAAGATCATATTATGAGGATGGCTCCATGCTTTGGTGGGATATTAGAAATCCTGATGTTCCAGTTACATCTGTCAAGTTTCATTCAGAGCCAGAGGATCCCCAATTTGAAGTCAGTAGTCTCCCAGTGAGTGTTCTCTTGTTTTCAGGTTCTTGCGTGGTTCTGTTCAGACAGTTCTTCTTCTCAATAGGCAACATACCTGCTCGTCTCTGTGCTAATTATGACTATCAAGTGAGTAGTCTTAGAAGACTAGCATCAAGTGTACAAGAAGAAGCTCAGCAGTGCAGGAGGAGAAACAGGGATGAAGAAGACAAACCTTGGGATCTTAAAGAGGAACTACAGAGTGTGAAGCCTCTGATCGCTCTATTTTTGACTCCTGTATTCAGTCTGTTTCTCCAATTCCAGTATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

193

Amino Acids

22.02

Weight (kDa)

4.97

Isoelectric Point (pI)

68.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07660 AT5G61460
fragaria_vesca	FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291
malus_domestica	MD07G1252300.v1.1
prunus_persica	Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1
pyrus_communis	pycom07g22470
rosa_chinensis	RchiOBHm_Chr1g0342881 RchiOBHm_Chr1g0374131 RchiOBHm_Chr4g0408871 RchiOBHm_Chr7g0243831
rosa_laevigata	RLG00000026760
rosa_multiflora	Rmu_sc0008430.1_g000005 Rmu_sc0020614.1_g000004 Rmu_sc0028209.1_g000001 Rmu_sc0039486.1_g000001 Rmu_ssc0000450.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283700 Rroxscaffold_5G00354810
rosa_rugosa	Rorug01G0380900.1
rosa_samantha	Rh1AG391800 Rh1BG355900 Rh1DG386500 Rh4DG145500 Rh4DG209300
rosa_wichuraiana	Rw1G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
AccB7I	CCANNNNNTGG	1 cut(s)	201
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	3 cut(s)	260, 273, 498
AfaI	GTAC	1 cut(s)	432
AfiI	CCNNNNNNNGG	1 cut(s)	201
AgsI	TTSAA	2 cut(s)	62, 278
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	2 cut(s)	18, 443
AluI	AGCT	2 cut(s)	18, 443
Alw26I	GTCTC	3 cut(s)	156, 293, 380
AlwI	GGATC	3 cut(s)	260, 273, 498
Asp700I	GAANNNNTTC	1 cut(s)	57
BamHI	GGATCC	1 cut(s)	265
BbsI	GAAGAC	2 cut(s)	421, 483
BccI	CCATC	2 cut(s)	82, 182
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	3 cut(s)	156, 293, 380
BfaI	CTAG	1 cut(s)	419
BfmI	CTRYAG	1 cut(s)	506
BfuAI	ACCTGC	1 cut(s)	376
BlpI	GCTNAGC	1 cut(s)	444
Bme1390I	CCNGG	1 cut(s)	104
BmiI	GGNNCC	3 cut(s)	31, 193, 267
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	431
BmuI	ACTGGG	1 cut(s)	287
BpiI	GAAGAC	2 cut(s)	421, 483
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
Bpu1102I	GCTNAGC	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	48, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse1I	ACTGG	3 cut(s)	230, 293, 571
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	48, 485
BseGI	GGATG	2 cut(s)	193, 475
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	3 cut(s)	230, 293, 571
BseRI	GAGGAG	2 cut(s)	22, 472
BseYI	CCCAGC	1 cut(s)	107
BsgI	GTGCAG	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	3 cut(s)	156, 293, 380
BsmBI	CGTCTC	1 cut(s)	380
Bsp1407I	TGTACA	1 cut(s)	430
Bsp143I	GATC	4 cut(s)	173, 265, 490, 525
Bsp1720I	GCTNAGC	1 cut(s)	444
BspACI	CCGC	1 cut(s)	156
BspCNI	CTCAG	1 cut(s)	457
BspLI	GGNNCC	3 cut(s)	31, 193, 267
BspMI	ACCTGC	1 cut(s)	376
BspPI	GGATC	3 cut(s)	260, 273, 498
BsrGI	TGTACA	1 cut(s)	430
BsrI	ACTGG	3 cut(s)	230, 293, 571
BssECI	CCNNGG	2 cut(s)	48, 485
BssMI	GATC	4 cut(s)	173, 265, 490, 525
BssT1I	CCWWGG	2 cut(s)	48, 485
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	342
BstAUI	TGTACA	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	410, 444
BstF5I	GGATG	2 cut(s)	193, 475
BstKTI	GATC	4 cut(s)	176, 268, 493, 528
BstMAI	GTCTC	3 cut(s)	156, 293, 380
BstMBI	GATC	4 cut(s)	173, 265, 490, 525
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	506
BstV2I	GAAGAC	2 cut(s)	421, 483
BstX2I	RGATCY	2 cut(s)	265, 490
BstYI	RGATCY	2 cut(s)	265, 490
BtsCI	GGATG	2 cut(s)	193, 475
BtsI	GCAGTG	1 cut(s)	455
BtsIMutI	CAGTG	2 cut(s)	300, 455
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	431
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	7 cut(s)	18, 30, 107, 192, 259, 443, 520
CviKI_1	RGCY	7 cut(s)	18, 30, 107, 192, 259, 443, 520
CviQI	GTAC	1 cut(s)	431
DdeI	CTNAG	2 cut(s)	410, 444
DpnI	GATC	4 cut(s)	175, 267, 492, 527
DpnII	GATC	4 cut(s)	173, 265, 490, 525
Eco130I	CCWWGG	2 cut(s)	48, 485
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	2 cut(s)	48, 485
ErhI	CCWWGG	2 cut(s)	48, 485
Esp3I	CGTCTC	1 cut(s)	380
FaeI	CATG	1 cut(s)	199
FaiI	YATR	8 cut(s)	144, 150, 178, 183, 197, 365, 390, 576
FatI	CATG	1 cut(s)	195
FokI	GGATG	2 cut(s)	200, 482
FspBI	CTAG	1 cut(s)	419
GsaI	CCCAGC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	199
HinfI	GANTC	3 cut(s)	80, 90, 541
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	4 cut(s)	79, 256, 338, 525
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	431
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4V	TGCA	1 cut(s)	453
HpyF3I	CTNAG	2 cut(s)	410, 444
Hsp92II	CATG	1 cut(s)	199
Kzo9I	GATC	4 cut(s)	173, 265, 490, 525
LmnI	GCTCC	2 cut(s)	35, 197
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	1 cut(s)	419
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	4 cut(s)	175, 267, 492, 527
MboI	GATC	4 cut(s)	173, 265, 490, 525
MboII	GAAGA	7 cut(s)	110, 337, 340, 426, 449, 485, 488
MflI	RGATCY	2 cut(s)	265, 490
MluCI	AATT	4 cut(s)	39, 272, 385, 566
MlyI	GAGTC	1 cut(s)	535
MnlI	CCTC	7 cut(s)	21, 43, 178, 256, 450, 493, 531
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	1 cut(s)	495
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
NdeII	GATC	4 cut(s)	173, 265, 490, 525
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	3 cut(s)	31, 193, 267
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	2 cut(s)	80, 90
PflMI	CCANNNNNTGG	1 cut(s)	201
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
Psp6I	CCWGG	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	3 cut(s)	31, 193, 267
PsuI	RGATCY	2 cut(s)	265, 490
RsaI	GTAC	1 cut(s)	432
RsaNI	GTAC	1 cut(s)	431
SaqAI	TTAA	1 cut(s)	495
Sau3AI	GATC	4 cut(s)	173, 265, 490, 525
SchI	GAGTC	1 cut(s)	535
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	6 cut(s)	13, 20, 319, 370, 445, 487
SfaNI	GCATC	1 cut(s)	431
SfcI	CTRYAG	1 cut(s)	506
Sse9I	AATT	4 cut(s)	39, 272, 385, 566
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	1 cut(s)	419
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	2 cut(s)	48, 485
TaaI	ACNGT	1 cut(s)	342
TaqI	TCGA	1 cut(s)	138
TasI	AATT	4 cut(s)	39, 272, 385, 566
TatI	WGTACW	1 cut(s)	430
TfiI	GAWTC	2 cut(s)	80, 90
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	2 cut(s)	300, 455
TspDTI	ATGAA	2 cut(s)	239, 486
TspRI	CASTG	2 cut(s)	300, 455
Van91I	CCANNNNNTGG	1 cut(s)	201
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.