RchiOBHm_Chr1g0342881

Structural maintenance of chromosomes protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003625
Physical Location & Seq
Reverse (-)
34685948 .. 34686873
926 bp
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UTR
Exon/CDS
Intron
PRQ56948

Sequence Viewer

Length: 363 bp
ATGGTGGTAAATGTCCTGGTAGATATGGGAAGTGTTGGAAGGCAAGTTCTTGTTAAAATTATGAGGGAAAGGAAGTTCTTGCGTGGTTCTATTCAGACAGTTCTTCTTCTCAATAGGCAACATGGACCTGCTCGTCTCTGTGCTAATTATGACTATCAAGTGAGTAGTCTTAGAAGACTAGCATCAGGTGTACAAGAAGAAGCTCAGCAGTGCAGGAGGAGAAAAAGGGATGAAGAAGACAACCCTTGGGATCTTAAAGAGGAACTACAGAGTGTGAAGGTCACCATGATAAGCGTCGATGGTTCAAAAAGGATGCAAAAGGATATTGCCATTAACCAGCAAAGGATTTCTACCCACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_23 SMC_N

Protein Analysis

120

Amino Acids

13.89

Weight (kDa)

9.92

Isoelectric Point (pI)

49.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 132
Acc36I ACCTGC 1 cut(s) 136
AclWI GGATC 1 cut(s) 258
AfaI GTAC 1 cut(s) 192
AgsI TTSAA 1 cut(s) 306
AjnI CCWGG 1 cut(s) 15
AloI GAACNNNNNNTCC 4 cut(s) 30, 59, 62, 91
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 140
AlwI GGATC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 125
BbsI GAAGAC 2 cut(s) 181, 243
BccI CCATC 1 cut(s) 293
BciT130I CCWGG 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 266
BfuAI ACCTGC 1 cut(s) 136
BlpI GCTNAGC 1 cut(s) 204
Bme1390I CCNGG 1 cut(s) 17
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 17
BmsI GCATC 2 cut(s) 191, 303
BpiI GAAGAC 2 cut(s) 181, 243
Bpu1102I GCTNAGC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 245
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 2 cut(s) 235, 318
BseMII CTCAG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 232
BsmAI GTCTC 1 cut(s) 140
BsmBI CGTCTC 1 cut(s) 140
Bsp1407I TGTACA 1 cut(s) 190
Bsp143I GATC 1 cut(s) 250
Bsp1720I GCTNAGC 1 cut(s) 204
BspCNI CTCAG 1 cut(s) 217
BspMI ACCTGC 1 cut(s) 136
BspPI GGATC 1 cut(s) 258
BsrGI TGTACA 1 cut(s) 190
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 1 cut(s) 250
BssT1I CCWWGG 1 cut(s) 245
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 100
BstAUI TGTACA 1 cut(s) 190
BstDEI CTNAG 2 cut(s) 170, 204
BstEII GGTNACC 1 cut(s) 280
BstF5I GGATG 2 cut(s) 235, 318
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 1 cut(s) 250
BstNI CCWGG 1 cut(s) 17
BstPI GGTNACC 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 15
BstSFI CTRYAG 1 cut(s) 266
BstV2I GAAGAC 2 cut(s) 181, 243
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BtsCI GGATG 2 cut(s) 235, 318
BtsI GCAGTG 1 cut(s) 215
BtsIMutI CAGTG 1 cut(s) 215
BveI ACCTGC 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 125
CseI GACGC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 191
CviAII CATG 2 cut(s) 122, 286
CviJI RGCY 1 cut(s) 203
CviKI_1 RGCY 1 cut(s) 203
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 2 cut(s) 170, 204
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
DrdI GACNNNNNNGTC 1 cut(s) 132
DseDI GACNNNNNNGTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 125
Eco91I GGTNACC 1 cut(s) 280
EcoO65I GGTNACC 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 245
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 2 cut(s) 125, 289
FaiI YATR 5 cut(s) 26, 62, 123, 150, 287
FatI CATG 2 cut(s) 121, 285
FokI GGATG 2 cut(s) 242, 325
FspBI CTAG 1 cut(s) 179
HgaI GACGC 1 cut(s) 283
Hin1II CATG 2 cut(s) 125, 289
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 96, 362
Hpy8I GTNNAC 1 cut(s) 191
Hpy99I CGWCG 1 cut(s) 299
HpyAV CCTTC 2 cut(s) 33, 271
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 2 cut(s) 213, 316
HpyF3I CTNAG 2 cut(s) 170, 204
Hsp92II CATG 2 cut(s) 125, 289
Kzo9I GATC 1 cut(s) 250
LpnPI CCDG 6 cut(s) 2, 29, 141, 171, 199, 350
LweI GCATC 2 cut(s) 191, 303
MaeI CTAG 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 280
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 6 cut(s) 95, 98, 186, 209, 245, 248
MflI RGATCY 1 cut(s) 250
MluCI AATT 2 cut(s) 57, 145
MmeI TCCRAC 1 cut(s) 16
MnlI CCTC 3 cut(s) 57, 210, 253
MseI TTAA 3 cut(s) 54, 255, 333
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
NdeII GATC 1 cut(s) 250
NlaIII CATG 2 cut(s) 125, 289
NmuCI GTSAC 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 15
PspEI GGTNACC 1 cut(s) 280
PspGI CCWGG 1 cut(s) 15
PspPI GGNCC 1 cut(s) 125
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SaqAI TTAA 3 cut(s) 54, 255, 333
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 17
SetI ASST 5 cut(s) 130, 190, 205, 282, 360
SfaNI GCATC 2 cut(s) 191, 303
SfcI CTRYAG 1 cut(s) 266
SinI GGWCC 1 cut(s) 125
Sse9I AATT 2 cut(s) 57, 145
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 15
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 297
TasI AATT 2 cut(s) 57, 145
TatI WGTACW 1 cut(s) 190
Tru1I TTAA 3 cut(s) 54, 255, 333
Tru9I TTAA 3 cut(s) 54, 255, 333
TscAI CASTG 1 cut(s) 215
TseFI GTSAC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 246
TspRI CASTG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 125
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.