Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008430.1

Orthogroup ID

OG0003625

Physical Location & Seq

Genomic Coordinates Reverse (-)

25805 .. 27721

Gene Structure 1917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008430.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggaatctcgccaaattcactttagaattcaccctgttcatttactcaaacccaggtatcagagcagatcgaatcattcgatccccaaaacaaacagacccaagccaccacagctcttcgctctccccccaagccaccgcagctgcaccgcgcctttattccaagcctccaccgtgtctctacctcagactccctcgatccccaaaaaaaacatacccaagccaccgcagctcttcgctctccccgcaagccaccgcagctgcaccgcgcctctgttccaaacctccactgtgtctctacctcagactccctcgatcccgaaaacaaacagactcaagccaccgcagctcttcgctcgtcttcggtcttcgctctccccccaggccaccgcagctgcaccgcgcctttgttccaagcctccaccgtgtctctacctcagactccctctggtccgcgcctctgcctctaaacggttcctgcgtggttctgttcagacagttcttcttctcaataggcaacatagacctgctcgtctctgtgctaattatgactatcaagggagtagtcttagaagattagcatcaggtgtacaagaagaagctcagcagtgcaggaggagaaaaagggatgaagaagacaaacctcgagatcttaaagaggaactacagagtgtgaaggatcctgatgaggctaggaaacctgaaggcattaggagaccacatgatgacgtgggagatattttgggagattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA_23 SMC_N

Protein Analysis

250

Amino Acids

28.21

Weight (kDa)

10.69

Isoelectric Point (pI)

74.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003625)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07660 AT5G61460
fragaria_vesca	FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291 FvH4_7g27291
malus_domestica	MD07G1252300.v1.1
prunus_persica	Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1 Prupe.2G275800_v2.0.a1
pyrus_communis	pycom07g22470
rosa_chinensis	RchiOBHm_Chr1g0342881 RchiOBHm_Chr1g0374131 RchiOBHm_Chr4g0408871 RchiOBHm_Chr7g0243831
rosa_laevigata	RLG00000026760
rosa_multiflora	Rmu_sc0008430.1_g000005 Rmu_sc0020614.1_g000004 Rmu_sc0028209.1_g000001 Rmu_sc0039486.1_g000001 Rmu_ssc0000450.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283700 Rroxscaffold_5G00354810
rosa_rugosa	Rorug01G0380900.1
rosa_samantha	Rh1AG391800 Rh1BG355900 Rh1DG386500 Rh4DG145500 Rh4DG209300
rosa_wichuraiana	Rw1G034380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	531
Acc36I	ACCTGC	1 cut(s)	535
AccII	CGCG	4 cut(s)	152, 269, 403, 456
AclWI	GGATC	5 cut(s)	76, 193, 310, 674, 687
AcsI	RAATTY	2 cut(s)	15, 27
AcuI	CTGAAG	1 cut(s)	723
AfaI	GTAC	1 cut(s)	591
AfiI	CCNNNNNNNGG	1 cut(s)	471
AjiI	CACGTC	1 cut(s)	730
AjnI	CCWGG	2 cut(s)	53, 381
AluBI	AGCT	7 cut(s)	115, 144, 232, 261, 349, 395, 602
AluI	AGCT	7 cut(s)	115, 144, 232, 261, 349, 395, 602
Alw26I	GTCTC	5 cut(s)	183, 300, 434, 539, 709
AlwI	GGATC	5 cut(s)	76, 193, 310, 674, 687
Ama87I	CYCGRG	1 cut(s)	645
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	8 cut(s)	141, 144, 229, 258, 261, 346, 392, 395
ApoI	RAATTY	2 cut(s)	15, 27
AspLEI	GCGC	4 cut(s)	154, 271, 405, 458
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	645
AvaII	GGWCC	1 cut(s)	451
BaeI	ACNNNNGTAYC	2 cut(s)	41, 74
BamHI	GGATCC	1 cut(s)	679
BbsI	GAAGAC	3 cut(s)	353, 360, 642
BbvI	GCAGC	8 cut(s)	131, 153, 241, 248, 270, 358, 382, 404
BciT130I	CCWGG	2 cut(s)	55, 383
BcoDI	GTCTC	5 cut(s)	183, 300, 434, 539, 709
BfaI	CTAG	1 cut(s)	693
BfmI	CTRYAG	1 cut(s)	665
BfuAI	ACCTGC	1 cut(s)	535
BglII	AGATCT	1 cut(s)	649
BisI	GCNGC	8 cut(s)	142, 145, 230, 259, 262, 347, 393, 396
BlpI	GCTNAGC	1 cut(s)	603
BlsI	GCNGC	8 cut(s)	143, 146, 231, 260, 263, 348, 394, 397
Bme1390I	CCNGG	2 cut(s)	55, 383
Bme18I	GGWCC	1 cut(s)	451
BmeT110I	CYCGRG	1 cut(s)	645
BmgBI	CACGTC	1 cut(s)	730
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	2 cut(s)	476, 681
BmrFI	CCNGG	2 cut(s)	55, 383
BmsI	GCATC	1 cut(s)	590
BpiI	GAAGAC	3 cut(s)	353, 360, 642
Bpu1102I	GCTNAGC	1 cut(s)	603
BpuEI	CTTGAG	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	580
BsaI	GGTCTC	1 cut(s)	709
BsaJI	CCNNGG	2 cut(s)	53, 381
Bsc4I	CCNNNNNNNGG	1 cut(s)	471
Bse8I	GATNNNNATC	1 cut(s)	580
BseBI	CCWGG	2 cut(s)	55, 383
BseDI	CCNNGG	2 cut(s)	53, 381
BseGI	GGATG	1 cut(s)	634
BseJI	GATNNNNATC	1 cut(s)	580
BseLI	CCNNNNNNNGG	1 cut(s)	471
BseMII	CTCAG	4 cut(s)	200, 317, 451, 617
BseRI	GAGGAG	1 cut(s)	631
BseXI	GCAGC	8 cut(s)	131, 153, 241, 248, 270, 358, 382, 404
BsgI	GTGCAG	4 cut(s)	130, 247, 381, 631
Bsh1236I	CGCG	4 cut(s)	152, 269, 403, 456
BshFI	GGCC	1 cut(s)	386
BsiHKCI	CYCGRG	1 cut(s)	645
BslI	CCNNNNNNNGG	1 cut(s)	471
BsmAI	GTCTC	5 cut(s)	183, 300, 434, 539, 709
BsmBI	CGTCTC	1 cut(s)	539
BsnI	GGCC	1 cut(s)	386
Bso31I	GGTCTC	1 cut(s)	709
BsoBI	CYCGRG	1 cut(s)	645
Bsp1407I	TGTACA	1 cut(s)	589
Bsp143I	GATC	6 cut(s)	68, 81, 198, 315, 649, 679
Bsp1720I	GCTNAGC	1 cut(s)	603
BspANI	GGCC	1 cut(s)	386
BspCNI	CTCAG	4 cut(s)	199, 316, 450, 616
BspFNI	CGCG	4 cut(s)	152, 269, 403, 456
BspLI	GGNNCC	2 cut(s)	476, 681
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	5 cut(s)	76, 193, 310, 674, 687
BspQI	GCTCTTC	3 cut(s)	122, 239, 356
BspTNI	GGTCTC	1 cut(s)	709
BsrGI	TGTACA	1 cut(s)	589
BssECI	CCNNGG	2 cut(s)	53, 381
BssMI	GATC	6 cut(s)	68, 81, 198, 315, 649, 679
Bst2UI	CCWGG	2 cut(s)	55, 383
Bst4CI	ACNGT	5 cut(s)	175, 292, 426, 474, 499
Bst6I	CTCTTC	3 cut(s)	122, 239, 356
BstAUI	TGTACA	1 cut(s)	589
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	5 cut(s)	186, 303, 437, 569, 603
BstF5I	GGATG	1 cut(s)	634
BstFNI	CGCG	4 cut(s)	152, 269, 403, 456
BstHHI	GCGC	4 cut(s)	154, 271, 405, 458
BstKTI	GATC	6 cut(s)	71, 84, 201, 318, 652, 682
BstMAI	GTCTC	5 cut(s)	183, 300, 434, 539, 709
BstMBI	GATC	6 cut(s)	68, 81, 198, 315, 649, 679
BstMWI	GCNNNNNNNGC	7 cut(s)	112, 141, 229, 245, 258, 346, 392
BstNI	CCWGG	2 cut(s)	55, 383
BstSCI	CCNGG	2 cut(s)	53, 381
BstSFI	CTRYAG	1 cut(s)	665
BstUI	CGCG	4 cut(s)	152, 269, 403, 456
BstV1I	GCAGC	8 cut(s)	131, 153, 241, 248, 270, 358, 382, 404
BstV2I	GAAGAC	3 cut(s)	353, 360, 642
BstX2I	RGATCY	2 cut(s)	649, 679
BstYI	RGATCY	2 cut(s)	649, 679
BsuRI	GGCC	1 cut(s)	386
BtrI	CACGTC	1 cut(s)	730
BtsCI	GGATG	1 cut(s)	634
BtsI	GCAGTG	1 cut(s)	614
BtsIMutI	CAGTG	2 cut(s)	288, 614
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	1 cut(s)	250
CfoI	GCGC	4 cut(s)	154, 271, 405, 458
Cfr13I	GGNCC	1 cut(s)	451
Csp6I	GTAC	1 cut(s)	590
CviAII	CATG	1 cut(s)	722
CviQI	GTAC	1 cut(s)	590
DdeI	CTNAG	5 cut(s)	186, 303, 437, 569, 603
DpnI	GATC	6 cut(s)	70, 83, 200, 317, 651, 681
DpnII	GATC	6 cut(s)	68, 81, 198, 315, 649, 679
DrdI	GACNNNNNNGTC	1 cut(s)	531
DseDI	GACNNNNNNGTC	1 cut(s)	531
Eam1104I	CTCTTC	3 cut(s)	122, 239, 356
EarI	CTCTTC	3 cut(s)	122, 239, 356
Eco31I	GGTCTC	1 cut(s)	709
Eco47I	GGWCC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	723
Eco88I	CYCGRG	1 cut(s)	645
EcoRI	GAATTC	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	53, 381
Esp3I	CGTCTC	1 cut(s)	539
FaeI	CATG	1 cut(s)	725
FaiI	YATR	4 cut(s)	215, 522, 549, 723
FatI	CATG	1 cut(s)	721
FauI	CCCGC	1 cut(s)	253
Fnu4HI	GCNGC	8 cut(s)	142, 145, 230, 259, 262, 347, 393, 396
FokI	GGATG	1 cut(s)	641
Fsp4HI	GCNGC	8 cut(s)	142, 145, 230, 259, 262, 347, 393, 396
FspBI	CTAG	1 cut(s)	693
GlaI	GCGC	4 cut(s)	153, 270, 404, 457
GluI	GCNGC	8 cut(s)	142, 145, 230, 259, 262, 347, 393, 396
HaeIII	GGCC	1 cut(s)	386
HhaI	GCGC	4 cut(s)	154, 271, 405, 458
Hin1II	CATG	1 cut(s)	725
Hin6I	GCGC	4 cut(s)	152, 269, 403, 456
HinP1I	GCGC	4 cut(s)	152, 269, 403, 456
HinfI	GANTC	6 cut(s)	5, 73, 190, 307, 333, 441
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	590
Hpy188I	TCNGA	5 cut(s)	63, 189, 306, 440, 495
Hpy188III	TCNNGA	3 cut(s)	319, 647, 683
Hpy8I	GTNNAC	1 cut(s)	590
HpyAV	CCTTC	2 cut(s)	670, 698
HpyCH4III	ACNGT	5 cut(s)	175, 292, 426, 474, 499
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	4 cut(s)	147, 264, 398, 612
HpyF10VI	GCNNNNNNNGC	7 cut(s)	112, 141, 229, 245, 258, 346, 392
HpyF3I	CTNAG	5 cut(s)	186, 303, 437, 569, 603
HpySE526I	ACGT	1 cut(s)	729
Hsp92II	CATG	1 cut(s)	725
HspAI	GCGC	4 cut(s)	152, 269, 403, 456
Kzo9I	GATC	6 cut(s)	68, 81, 198, 315, 649, 679
LguI	GCTCTTC	3 cut(s)	122, 239, 356
Lsp1109I	GCAGC	8 cut(s)	131, 153, 241, 248, 270, 358, 382, 404
LweI	GCATC	1 cut(s)	590
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	1 cut(s)	729
MalI	GATC	6 cut(s)	70, 83, 200, 317, 651, 681
MboI	GATC	6 cut(s)	68, 81, 198, 315, 649, 679
MflI	RGATCY	2 cut(s)	649, 679
MluCI	AATT	3 cut(s)	15, 27, 544
MlyI	GAGTC	4 cut(s)	184, 301, 327, 435
MseI	TTAA	2 cut(s)	654, 751
MspA1I	CMGCKG	3 cut(s)	144, 261, 395
MspR9I	CCNGG	2 cut(s)	55, 383
MvaI	CCWGG	2 cut(s)	55, 383
MvnI	CGCG	4 cut(s)	152, 269, 403, 456
MwoI	GCNNNNNNNGC	7 cut(s)	112, 141, 229, 245, 258, 346, 392
NdeII	GATC	6 cut(s)	68, 81, 198, 315, 649, 679
NlaIII	CATG	1 cut(s)	725
NlaIV	GGNNCC	2 cut(s)	476, 681
PaeR7I	CTCGAG	1 cut(s)	645
PciSI	GCTCTTC	3 cut(s)	122, 239, 356
PcsI	WCGNNNNNNNCGW	2 cut(s)	77, 478
PfeI	GAWTC	2 cut(s)	5, 73
PkrI	GCNGC	8 cut(s)	143, 146, 231, 260, 263, 348, 394, 397
PleI	GAGTC	4 cut(s)	184, 301, 327, 435
PpsI	GAGTC	4 cut(s)	184, 301, 327, 435
Psp6I	CCWGG	2 cut(s)	53, 381
PspGI	CCWGG	2 cut(s)	53, 381
PspN4I	GGNNCC	2 cut(s)	476, 681
PspPI	GGNCC	1 cut(s)	451
PsuI	RGATCY	2 cut(s)	649, 679
PvuII	CAGCTG	3 cut(s)	144, 261, 395
RsaI	GTAC	1 cut(s)	591
RsaNI	GTAC	1 cut(s)	590
SapI	GCTCTTC	3 cut(s)	122, 239, 356
SaqAI	TTAA	2 cut(s)	654, 751
SatI	GCNGC	8 cut(s)	142, 145, 230, 259, 262, 347, 393, 396
Sau3AI	GATC	6 cut(s)	68, 81, 198, 315, 649, 679
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	4 cut(s)	184, 301, 327, 435
ScrFI	CCNGG	2 cut(s)	55, 383
SfaNI	GCATC	1 cut(s)	590
SfcI	CTRYAG	1 cut(s)	665
Sfr274I	CTCGAG	1 cut(s)	645
SinI	GGWCC	1 cut(s)	451
SlaI	CTCGAG	1 cut(s)	645
SmlI	CTYRAG	2 cut(s)	335, 645
SmoI	CTYRAG	2 cut(s)	335, 645
Sse9I	AATT	3 cut(s)	15, 27, 544
SspMI	CTAG	1 cut(s)	693
StyD4I	CCNGG	2 cut(s)	53, 381
TaaI	ACNGT	5 cut(s)	175, 292, 426, 474, 499
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	5 cut(s)	71, 80, 197, 314, 646
TaqII	GACCGA	1 cut(s)	354
TasI	AATT	3 cut(s)	15, 27, 544
TatI	WGTACW	1 cut(s)	589
TfiI	GAWTC	2 cut(s)	5, 73
Tru1I	TTAA	2 cut(s)	654, 751
Tru9I	TTAA	2 cut(s)	654, 751
TscAI	CASTG	2 cut(s)	295, 614
TseI	GCWGC	8 cut(s)	141, 144, 229, 258, 261, 346, 392, 395
TspDTI	ATGAA	2 cut(s)	29, 645
TspRI	CASTG	2 cut(s)	295, 614
VpaK11BI	GGWCC	1 cut(s)	451
XapI	RAATTY	2 cut(s)	15, 27
XhoI	CTCGAG	1 cut(s)	645
XspI	CTAG	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.