Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0010604

Physical Location & Seq

Genomic Coordinates Forward (+)

5369107 .. 5369735

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1067100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGAGCAGTTTAAAGGCCAGCCTCGACTTCCGAAATTCACCGTCCCGAAACGGTACGACTTAAGGCTGAAGCCGGACCTCGCCGCCTGCAAATTCGGCAGCTCCGTCGACATCGACCTCGATATCGTTGCCGATACCAAATTCATCTTTCTCAACGTCGCCGAGCTCTTCTTCAATGCGGGCTCCGTCTTTTTCGCTCACGGCTGCTCGTCCAAGGTAATCGATGTTCATTTGCTTTTCAAATTTGTAGAACTGACTGAAAAAAGAAGTAGAAAGGAGAGTGAGGTTTTCAAGCCTACGAAGGCCGAGACGTTCTTCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0006810 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0031090 GO:0031406 GO:0033218 GO:0033293 GO:0033554 GO:0034641 GO:0036094 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043177 GO:0043226 GO:0043227 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00480 ko01100 ko04614 ko04640 map00480 map01100 map04614 map04640

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

108

Amino Acids

12.23

Weight (kDa)

8.95

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010604)

Species	Orthologous Gene IDs
malus_domestica	MD08G1067100.v1.1 MD08G1067200.v1.1
prunus_persica	Prupe.1G457200_v2.0.a1 Prupe.1G457200_v2.0.a1
pyrus_communis	pycom08g05540 pycom08g05580 pycom15g05120
rosa_multiflora	Rmu_co7981604.1_g000001 Rmu_co8250275.1_g000001 Rmu_sc0032968.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072890
rosa_samantha	Rh5AG025300 Rh5AG025700 Rh5BG026800 Rh5CG028100 Rh5CG028200 Rh5CG028500 Rh5DG025400 Rh6DG505300 Rh6DG505400
rosa_wichuraiana	Rw5G002360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	2 cut(s)	84, 179
AcsI	RAATTY	4 cut(s)	35, 92, 140, 242
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	56
AflII	CTTAAG	1 cut(s)	61
AgsI	TTSAA	3 cut(s)	175, 241, 292
AluBI	AGCT	2 cut(s)	102, 166
AluI	AGCT	2 cut(s)	102, 166
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	302
AoxI	GGCC	2 cut(s)	16, 303
ApeKI	GCWGC	2 cut(s)	99, 204
ApoI	RAATTY	4 cut(s)	35, 92, 140, 242
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	76
BanII	GRGCYC	2 cut(s)	168, 185
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	111, 191
BceAI	ACGGC	1 cut(s)	217
BcgI	CGANNNNNNTGC	4 cut(s)	88, 110, 122, 144
BcoDI	GTCTC	1 cut(s)	302
BfrI	CTTAAG	1 cut(s)	61
BisI	GCNGC	3 cut(s)	84, 100, 205
BlsI	GCNGC	3 cut(s)	85, 101, 206
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	184
Bsa29I	ATCGAT	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	213
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	111, 191
BshFI	GGCC	2 cut(s)	18, 305
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	302
BsmBI	CGTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	18, 305
Bsp1286I	GDGCHC	2 cut(s)	168, 185
BspACI	CCGC	2 cut(s)	84, 179
BspANI	GGCC	2 cut(s)	18, 305
BspDI	ATCGAT	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	184
BspQI	GCTCTTC	1 cut(s)	173
BspTI	CTTAAG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	43, 54
Bst6I	CTCTTC	1 cut(s)	173
BstAFI	CTTAAG	1 cut(s)	61
BstC8I	GCNNGC	3 cut(s)	20, 88, 181
BstMAI	GTCTC	1 cut(s)	302
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	111, 191
Bsu15I	ATCGAT	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	18, 305
BsuTUI	ATCGAT	1 cut(s)	222
Cac8I	GCNNGC	3 cut(s)	20, 88, 181
Cfr13I	GGNCC	1 cut(s)	76
ClaI	ATCGAT	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	55
CviQI	GTAC	1 cut(s)	55
DraI	TTTAAA	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	2 cut(s)	168, 185
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	166
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	2 cut(s)	168, 185
ErhI	CCWWGG	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	302
FaqI	GGGAC	1 cut(s)	29
FauI	CCCGC	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	84, 100, 205
FriOI	GRGCYC	2 cut(s)	168, 185
Fsp4HI	GCNGC	3 cut(s)	84, 100, 205
GluI	GCNGC	3 cut(s)	84, 100, 205
HaeIII	GGCC	2 cut(s)	18, 305
HapII	CCGG	1 cut(s)	74
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	2 cut(s)	110, 161
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	2 cut(s)	43, 54
HpyCH4IV	ACGT	2 cut(s)	156, 311
HpyCH4V	TGCA	1 cut(s)	90
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpySE526I	ACGT	2 cut(s)	156, 311
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	3 cut(s)	4, 107, 188
LpnPI	CCDG	3 cut(s)	32, 87, 100
Lsp1109I	GCAGC	2 cut(s)	111, 191
MaeII	ACGT	2 cut(s)	156, 311
MboII	GAAGA	3 cut(s)	160, 163, 307
MhlI	GDGCHC	2 cut(s)	168, 185
MluCI	AATT	4 cut(s)	35, 92, 140, 242
MnlI	CCTC	4 cut(s)	33, 89, 128, 277
MseI	TTAA	2 cut(s)	12, 62
MspCI	CTTAAG	1 cut(s)	61
MspI	CCGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	96
NlaIV	GGNNCC	1 cut(s)	184
NmeAIII	GCCGAG	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PkrI	GCNGC	3 cut(s)	85, 101, 206
Psp124BI	GAGCTC	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	76
PsrI	GAACNNNNNNTAC	2 cut(s)	210, 242
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	168
SalI	GTCGAC	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	2 cut(s)	12, 62
SatI	GCNGC	3 cut(s)	84, 100, 205
Sau96I	GGNCC	1 cut(s)	76
SduI	GDGCHC	2 cut(s)	168, 185
SetI	ASST	8 cut(s)	81, 104, 120, 159, 168, 219, 288, 314
SinI	GGWCC	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	4 cut(s)	35, 92, 140, 242
SsiI	CCGC	2 cut(s)	84, 179
SstI	GAGCTC	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	43, 54
TaiI	ACGT	2 cut(s)	159, 314
TaqI	TCGA	5 cut(s)	25, 108, 114, 120, 222
TasI	AATT	4 cut(s)	35, 92, 140, 242
TauI	GCSGC	1 cut(s)	86
Tru1I	TTAA	2 cut(s)	12, 62
Tru9I	TTAA	2 cut(s)	12, 62
TseI	GCWGC	2 cut(s)	99, 204
TspDTI	ATGAA	2 cut(s)	133, 218
TspGWI	ACGGA	2 cut(s)	94, 175
Vha464I	CTTAAG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	4 cut(s)	35, 92, 140, 242
XmiI	GTMKAC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.