Rw5G002360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0010604
Physical Location & Seq
Forward (+)
2046968 .. 2047658
691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G002360.1

Sequence Viewer

Length: 513 bp
ATGTATTTTGTCCCCGTCTCTTCTTTGGTGTACGAGCAAACTGGTATTATCTGTCCGTATACTATCACTCTCCGGCTCGACCGTTACAGGCCGACCGTGGAGAGGATGCTCACTACTAGGTGGCTGGGCACCGAAATAACGATTGAGCTAGTGCAGAAGGTTTTTACAAGGTCAGGATTTCGAATCGAACACATGACTTTAATTGAGCCCGGTCTGGGTTATGTTTTGTTTCAAAGTGATTTTGCTGTTGCAAATCTAATGTTTGGGAAAAGCAAGATGGAGTATACTCTAGGGGATGAGAACGACAACTCAATTCAACTGGGAATCCCGGAGAATCTCTTTCTGAACTTCGATTCAGCTATTCCTTACCCCGTCATAGTCAATGATGTGAAAGCCCACTTCGAAAGAGAGAAGTTCAATGTTCTGGGAGTGCAATTTCACAGGGCTGAAGAGGTGGTGCCACGTTCTTGCTATGTTAGCCTAGAGAGAAGCCCAGGTATTCTAACAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.55

Weight (kDa)

5.41

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 128, 457
AccI GTMKAC 2 cut(s) 59, 284
AcuI CTGAAG 1 cut(s) 468
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 2 cut(s) 102, 215
AgsI TTSAA 3 cut(s) 233, 317, 418
AjnI CCWGG 1 cut(s) 493
AluBI AGCT 2 cut(s) 148, 359
AluI AGCT 2 cut(s) 148, 359
Alw26I GTCTC 1 cut(s) 22
AoxI GGCC 1 cut(s) 89
AsuC2I CCSGG 2 cut(s) 210, 329
AsuII TTCGAA 2 cut(s) 181, 402
BaeGI GKGCMC 1 cut(s) 131
BanI GGYRCC 2 cut(s) 128, 457
BanII GRGCYC 1 cut(s) 210
BccI CCATC 1 cut(s) 271
BciT130I CCWGG 1 cut(s) 495
BcnI CCSGG 2 cut(s) 210, 329
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 4 cut(s) 117, 149, 290, 482
Bme1390I CCNGG 3 cut(s) 210, 329, 495
BmiI GGNNCC 2 cut(s) 130, 459
BmrFI CCNGG 3 cut(s) 210, 329, 495
BmrI ACTGGG 1 cut(s) 329
BmsI GCATC 1 cut(s) 96
BmuI ACTGGG 1 cut(s) 329
Bpu14I TTCGAA 2 cut(s) 181, 402
BpuMI CCSGG 2 cut(s) 210, 329
BsaJI CCNNGG 2 cut(s) 96, 493
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 215
Bse1I ACTGG 2 cut(s) 46, 324
BseBI CCWGG 1 cut(s) 495
BseDI CCNNGG 2 cut(s) 96, 493
BseGI GGATG 2 cut(s) 111, 301
BseLI CCNNNNNNNGG 2 cut(s) 102, 215
BseNI ACTGG 2 cut(s) 46, 324
BseSI GKGCMC 1 cut(s) 131
BseYI CCCAGC 1 cut(s) 124
BsgI GTGCAG 1 cut(s) 173
Bsh1285I CGRYCG 2 cut(s) 82, 96
BshFI GGCC 1 cut(s) 91
BshNI GGYRCC 2 cut(s) 128, 457
BsiEI CGRYCG 2 cut(s) 82, 96
BsiSI CCGG 3 cut(s) 73, 210, 329
BslI CCNNNNNNNGG 2 cut(s) 102, 215
BsmAI GTCTC 1 cut(s) 22
BsmBI CGTCTC 1 cut(s) 22
BsnI GGCC 1 cut(s) 91
Bsp119I TTCGAA 2 cut(s) 181, 402
Bsp1286I GDGCHC 2 cut(s) 131, 210
BspANI GGCC 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 130, 459
BspT104I TTCGAA 2 cut(s) 181, 402
BspT107I GGYRCC 2 cut(s) 128, 457
BsrI ACTGG 2 cut(s) 46, 324
BssECI CCNNGG 2 cut(s) 96, 493
BssNAI GTATAC 2 cut(s) 60, 285
Bst1107I GTATAC 2 cut(s) 60, 285
Bst2UI CCWGG 1 cut(s) 495
Bst4CI ACNGT 2 cut(s) 83, 97
Bst6I CTCTTC 2 cut(s) 25, 444
BstBI TTCGAA 2 cut(s) 181, 402
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 2 cut(s) 111, 301
BstMAI GTCTC 1 cut(s) 22
BstMCI CGRYCG 2 cut(s) 82, 96
BstMWI GCNNNNNNNGC 1 cut(s) 477
BstNI CCWGG 1 cut(s) 495
BstSCI CCNGG 3 cut(s) 208, 327, 493
BstSLI GKGCMC 1 cut(s) 131
BstZ17I GTATAC 2 cut(s) 60, 285
BsuRI GGCC 1 cut(s) 91
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 2 cut(s) 111, 301
Csp6I GTAC 1 cut(s) 31
CviAII CATG 1 cut(s) 193
CviQI GTAC 1 cut(s) 31
Eam1104I CTCTTC 2 cut(s) 25, 444
EarI CTCTTC 2 cut(s) 25, 444
Eco24I GRGCYC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 468
EcoRII CCWGG 1 cut(s) 493
EcoT38I GRGCYC 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 1 cut(s) 196
FaiI YATR 6 cut(s) 60, 194, 222, 285, 377, 474
FatI CATG 1 cut(s) 192
FblI GTMKAC 2 cut(s) 59, 284
FokI GGATG 2 cut(s) 118, 308
FriOI GRGCYC 1 cut(s) 210
FspBI CTAG 4 cut(s) 117, 149, 290, 482
GsaI CCCAGC 1 cut(s) 128
HaeIII GGCC 1 cut(s) 91
HapII CCGG 3 cut(s) 73, 210, 329
Hin1II CATG 1 cut(s) 196
HinfI GANTC 4 cut(s) 183, 324, 334, 353
HpaII CCGG 3 cut(s) 73, 210, 329
Hpy166II GTNNAC 3 cut(s) 31, 60, 285
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 1 cut(s) 174
Hpy8I GTNNAC 3 cut(s) 31, 60, 285
HpyAV CCTTC 1 cut(s) 151
HpyCH4III ACNGT 2 cut(s) 83, 97
HpyCH4IV ACGT 1 cut(s) 463
HpyCH4V TGCA 3 cut(s) 154, 251, 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 477
HpySE526I ACGT 1 cut(s) 463
Hsp92II CATG 1 cut(s) 196
LweI GCATC 1 cut(s) 96
MaeI CTAG 4 cut(s) 117, 149, 290, 482
MaeII ACGT 1 cut(s) 463
MaeIII GTNAC 1 cut(s) 83
MboII GAAGA 2 cut(s) 12, 461
MhlI GDGCHC 2 cut(s) 131, 210
MluCI AATT 3 cut(s) 201, 312, 434
MnlI CCTC 2 cut(s) 96, 445
MseI TTAA 1 cut(s) 200
MspI CCGG 3 cut(s) 73, 210, 329
MspR9I CCNGG 3 cut(s) 210, 329, 495
MvaI CCWGG 1 cut(s) 495
MwoI GCNNNNNNNGC 1 cut(s) 477
NciI CCSGG 2 cut(s) 210, 329
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 2 cut(s) 130, 459
NspV TTCGAA 2 cut(s) 181, 402
PfeI GAWTC 4 cut(s) 183, 324, 334, 353
PfoI TCCNGGA 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 493
PspFI CCCAGC 1 cut(s) 124
PspGI CCWGG 1 cut(s) 493
PspN4I GGNNCC 2 cut(s) 130, 459
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SaqAI TTAA 1 cut(s) 200
ScrFI CCNGG 3 cut(s) 210, 329, 495
SduI GDGCHC 2 cut(s) 131, 210
SetI ASST 8 cut(s) 122, 150, 162, 173, 361, 456, 466, 499
SfaNI GCATC 1 cut(s) 96
SfuI TTCGAA 2 cut(s) 181, 402
Sse9I AATT 3 cut(s) 201, 312, 434
SspMI CTAG 4 cut(s) 117, 149, 290, 482
StyD4I CCNGG 3 cut(s) 208, 327, 493
TaaI ACNGT 2 cut(s) 83, 97
TaiI ACGT 1 cut(s) 466
TaqI TCGA 5 cut(s) 78, 181, 186, 351, 402
TasI AATT 3 cut(s) 201, 312, 434
TfiI GAWTC 4 cut(s) 183, 324, 334, 353
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TspGWI ACGGA 1 cut(s) 45
XmiI GTMKAC 2 cut(s) 59, 284
XspI CTAG 4 cut(s) 117, 149, 290, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.