Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032968.1

Orthogroup ID

OG0010604

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 903

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032968.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgtcacagttcaaaggccaatctcggcttcccaaattcgccgtgccgaaacgctacgacgtaaggctcagacccgacctcgtcgcctgccaattcgtcggctccgtcgccatcgacctcgacatcgtctccgatacccgcttcatcgtcctcaacgccgccgagctctccgtcgacccccctgccgtgtccttcactcaactagactcttccaaggttttcaagccatcgaaagttgacggatttgaagatgatggcattttggtcgtggagtttgaggagacgattccagttgggctgggagttttggctattgggtttcaaggaattttgaatgacaagatgaagggattctatagaagtacatatgagcataatggggagaagaaaaacatggctgttacacagtttgaaccggttgatgccaggcgctgctttccgtgttgggatgaacctgcttgcaaggctacattcaaaattacattggaggatgtaccatctgaattggtagctctttccaacatgcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0006810 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0031090 GO:0031406 GO:0033218 GO:0033293 GO:0033554 GO:0034641 GO:0036094 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043177 GO:0043226 GO:0043227 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

176

Amino Acids

19.55

Weight (kDa)

4.97

Isoelectric Point (pI)

47.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010604)

Species	Orthologous Gene IDs
malus_domestica	MD08G1067100.v1.1 MD08G1067200.v1.1
prunus_persica	Prupe.1G457200_v2.0.a1 Prupe.1G457200_v2.0.a1
pyrus_communis	pycom08g05540 pycom08g05580 pycom15g05120
rosa_multiflora	Rmu_co7981604.1_g000001 Rmu_co8250275.1_g000001 Rmu_sc0032968.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072890
rosa_samantha	Rh5AG025300 Rh5AG025700 Rh5BG026800 Rh5CG028100 Rh5CG028200 Rh5CG028500 Rh5DG025400 Rh6DG505300 Rh6DG505400
rosa_wichuraiana	Rw5G002360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	463
AccI	GTMKAC	1 cut(s)	174
AciI	CCGC	2 cut(s)	139, 159
AcsI	RAATTY	2 cut(s)	35, 327
AfaI	GTAC	2 cut(s)	364, 495
AgeI	ACCGGT	1 cut(s)	415
AgsI	TTSAA	7 cut(s)	13, 223, 248, 323, 334, 413, 475
AjnI	CCWGG	1 cut(s)	425
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AluBI	AGCT	2 cut(s)	166, 512
AluI	AGCT	2 cut(s)	166, 512
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	2 cut(s)	133, 275
AlwNI	CAGNNNCTG	1 cut(s)	432
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	432
ApoI	RAATTY	2 cut(s)	35, 327
AsiGI	ACCGGT	1 cut(s)	415
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	432
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	419
BccI	CCATC	4 cut(s)	119, 235, 248, 505
BceAI	ACGGC	2 cut(s)	26, 170
BcgI	CGANNNNNNTGC	4 cut(s)	164, 198, 247, 281
BciT130I	CCWGG	1 cut(s)	427
BcoDI	GTCTC	2 cut(s)	133, 275
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	355
BfoI	RGCGCY	1 cut(s)	433
BfuAI	ACCTGC	1 cut(s)	463
BisI	GCNGC	2 cut(s)	159, 433
BlsI	GCNGC	2 cut(s)	160, 434
Bme1390I	CCNGG	1 cut(s)	427
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	427
BmsI	GCATC	1 cut(s)	412
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bse118I	RCCGGY	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	427
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	454, 496
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	419
BseYI	CCCAGC	1 cut(s)	298
BshFI	GGCC	1 cut(s)	18
BshTI	ACCGGT	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	416
BsmAI	GTCTC	2 cut(s)	133, 275
BsmBI	CGTCTC	2 cut(s)	133, 275
BsnI	GGCC	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	168
BspACI	CCGC	2 cut(s)	139, 159
BspANI	GGCC	1 cut(s)	18
BspCNI	CTCAG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	103
BspMI	ACCTGC	1 cut(s)	463
BsrFI	RCCGGY	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	290
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	427
Bst4CI	ACNGT	2 cut(s)	9, 408
Bst6I	CTCTTC	1 cut(s)	214
BstC8I	GCNNGC	2 cut(s)	88, 460
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	2 cut(s)	454, 496
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	432
BstMAI	GTCTC	2 cut(s)	133, 275
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	1 cut(s)	427
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	425
BstSFI	CTRYAG	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	454, 496
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	2 cut(s)	88, 460
CaiI	CAGNNNCTG	1 cut(s)	432
CfoI	GCGC	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	415
Csp6I	GTAC	2 cut(s)	363, 494
CspAI	ACCGGT	1 cut(s)	415
CviAII	CATG	2 cut(s)	394, 523
CviQI	GTAC	2 cut(s)	363, 494
DdeI	CTNAG	1 cut(s)	68
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	425
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	213
Esp3I	CGTCTC	2 cut(s)	133, 275
FaeI	CATG	2 cut(s)	397, 526
FaiI	YATR	6 cut(s)	357, 367, 369, 375, 395, 524
FatI	CATG	2 cut(s)	393, 522
FauI	CCCGC	1 cut(s)	146
FauNDI	CATATG	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	159, 433
FokI	GGATG	2 cut(s)	461, 503
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	2 cut(s)	159, 433
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	2 cut(s)	159, 433
GsaI	CCCAGC	1 cut(s)	302
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	1 cut(s)	416
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	2 cut(s)	397, 526
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	2 cut(s)	175, 238
HindII	GTYRAC	2 cut(s)	175, 238
HinfI	GANTC	3 cut(s)	206, 286, 351
HpaII	CCGG	1 cut(s)	416
Hpy166II	GTNNAC	2 cut(s)	175, 238
Hpy188I	TCNGA	3 cut(s)	71, 133, 502
Hpy8I	GTNNAC	2 cut(s)	175, 238
Hpy99I	CGWCG	5 cut(s)	62, 86, 101, 110, 176
HpyAV	CCTTC	2 cut(s)	202, 340
HpyCH4III	ACNGT	2 cut(s)	9, 408
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	397, 526
HspAI	GCGC	1 cut(s)	430
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	8 cut(s)	100, 195, 284, 303, 412, 429, 439, 468
Lsp1109I	GCAGC	1 cut(s)	419
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	3, 400
MboII	GAAGA	3 cut(s)	201, 260, 397
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	5 cut(s)	35, 92, 327, 477, 503
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	5 cut(s)	89, 128, 161, 271, 481
MroXI	GAANNNNTTC	1 cut(s)	350
MspI	CCGG	1 cut(s)	416
MspR9I	CCNGG	1 cut(s)	427
MvaI	CCWGG	1 cut(s)	427
MwoI	GCNNNNNNNGC	1 cut(s)	464
NdeI	CATATG	1 cut(s)	367
NlaIII	CATG	2 cut(s)	397, 526
NlaIV	GGNNCC	1 cut(s)	103
NmeAIII	GCCGAG	2 cut(s)	4, 187
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	526
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	286, 351
PflFI	GACNNNGTC	2 cut(s)	80, 125
PinAI	ACCGGT	1 cut(s)	415
PkrI	GCNGC	2 cut(s)	160, 434
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	425
PspFI	CCCAGC	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	425
PspN4I	GGNNCC	1 cut(s)	103
PstNI	CAGNNNCTG	1 cut(s)	432
PsyI	GACNNNGTC	2 cut(s)	80, 125
RsaI	GTAC	2 cut(s)	364, 495
RsaNI	GTAC	2 cut(s)	363, 494
SacI	GAGCTC	1 cut(s)	168
SalI	GTCGAC	1 cut(s)	173
SatI	GCNGC	2 cut(s)	159, 433
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	427
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	7 cut(s)	63, 81, 120, 168, 219, 457, 514
SfaNI	GCATC	1 cut(s)	412
SfcI	CTRYAG	1 cut(s)	355
Sse9I	AATT	5 cut(s)	35, 92, 327, 477, 503
SsiI	CCGC	2 cut(s)	139, 159
SspMI	CTAG	1 cut(s)	203
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	425
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	9, 408
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	4 cut(s)	114, 120, 174, 230
TasI	AATT	5 cut(s)	35, 92, 327, 477, 503
TatI	WGTACW	1 cut(s)	362
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	2 cut(s)	286, 351
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	432
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	3 cut(s)	133, 359, 465
TspGWI	ACGGA	4 cut(s)	94, 160, 255, 429
Tth111I	GACNNNGTC	2 cut(s)	80, 125
XapI	RAATTY	2 cut(s)	35, 327
XceI	RCATGY	1 cut(s)	526
XmiI	GTMKAC	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.