Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010604

Physical Location & Seq

Genomic Coordinates Forward (+)

4253654 .. 4255113

Gene Structure 1460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAGCAGTTTAAAGGCCAGCCCCGGCTTCCGAAATTCGCCGTCCCGAAACGGTACGACGTAAGGCTGATGCCGGACCTCGTCGCCTGCAAATTCGGCGGCTCCGTCGACATCGACCTCGATATCGTCGCCGATACCAAATTCATCGTTCTCAACGCCGCCGAGCTCTCCGTCAATGCGGGCTCCGTTTCTTTCGCTCACGGCGGCTCGTCCAAGGTAATCGATGTTTTCAAGCCTTCGAAGGCCGAGACGTTCGAAGACGATGGAATTTTGGTTTTGGAGTTTGGAGAGATGCTTCCGATTGGGTCTGGAGTTTTGGTTATTGAATTTGAAGGAATTTTGAATGACAAGATGAAGGGTTTCTACAGAAGTACATATGAGCACAATGGTGAGAAGAAAAATATGGCAGTTACGCAGTTTGAACCCGTTGATGCCAGGCGGTGCTTTCCGTGTTGGGATGAACCTGCTTGCAAGTATCAAGTGATAATGTTTACACCATTCTGGATATACATTGTTATAAATGCATTTTTGAGACTTGGAAAAAAGAGATCTGTTCTTTATGGTGGTAGTATAGATGAGAAATCAATCTTCCCGTTCTGGTTAAATTGTTCAAATATAGAGTTTATGACTTGCTGGCTATTTGGTTGGCAGGCTACATTCAAGATTACACTTGATGGTGTTCCGTCTGAACTAGTAGCCCTTTCTAACATGCCGATTCAAGAAGAAAAATTGAATGGACATCTGAAGACAGTTTCATATGTGGAAACACCAATTATGTCTACATATTTGGTGGCCATTGTTGTCGGATTGTTTGATTACGTTGAAGATCATACTTCTGATGGTAAACTCCTACACAATATCCTTAGTTTCATGTGTATGTCAGTGCAACCTTTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0006810 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0031090 GO:0031406 GO:0033218 GO:0033293 GO:0033554 GO:0034641 GO:0036094 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043177 GO:0043226 GO:0043227 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00480 ko01100 ko04614 ko04640 map00480 map01100 map04614 map04640

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

300

Amino Acids

33.67

Weight (kDa)

5.23

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010604)

Species	Orthologous Gene IDs
malus_domestica	MD08G1067100.v1.1 MD08G1067200.v1.1
prunus_persica	Prupe.1G457200_v2.0.a1 Prupe.1G457200_v2.0.a1
pyrus_communis	pycom08g05540 pycom08g05580 pycom15g05120
rosa_multiflora	Rmu_co7981604.1_g000001 Rmu_co8250275.1_g000001 Rmu_sc0032968.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072890
rosa_samantha	Rh5AG025300 Rh5AG025700 Rh5BG026800 Rh5CG028100 Rh5CG028200 Rh5CG028500 Rh5DG025400 Rh6DG505300 Rh6DG505400
rosa_wichuraiana	Rw5G002360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	518
Acc36I	ACCTGC	1 cut(s)	472
AccI	GTMKAC	2 cut(s)	108, 779
AciI	CCGC	5 cut(s)	99, 159, 179, 204, 439
AcoI	YGGCCR	1 cut(s)	792
AcsI	RAATTY	6 cut(s)	35, 92, 140, 267, 326, 336
AcuI	CTGAAG	1 cut(s)	764
AfaI	GTAC	2 cut(s)	56, 373
AhlI	ACTAGT	1 cut(s)	691
AjnI	CCWGG	1 cut(s)	434
AleI	CACNNNNGTG	1 cut(s)	387
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw21I	GWGCWC	2 cut(s)	168, 384
Alw26I	GTCTC	2 cut(s)	242, 526
AoxI	GGCC	3 cut(s)	16, 243, 792
ApoI	RAATTY	6 cut(s)	35, 92, 140, 267, 326, 336
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	401
AsuII	TTCGAA	2 cut(s)	239, 255
AvaII	GGWCC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	794
BanII	GRGCYC	2 cut(s)	168, 185
BarI	GAAGNNNNNNTAC	2 cut(s)	347, 379
BbsI	GAAGAC	2 cut(s)	264, 752
Bbv12I	GWGCWC	2 cut(s)	168, 384
BccI	CCATC	3 cut(s)	257, 668, 833
BceAI	ACGGC	2 cut(s)	26, 217
BciT130I	CCWGG	1 cut(s)	436
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	242, 526
BcuI	ACTAGT	1 cut(s)	691
BfaI	CTAG	1 cut(s)	692
BfmI	CTRYAG	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	472
BglII	AGATCT	1 cut(s)	548
BisI	GCNGC	3 cut(s)	100, 159, 205
BlsI	GCNGC	3 cut(s)	101, 160, 206
Bme1390I	CCNGG	2 cut(s)	25, 436
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	2 cut(s)	103, 184
BmrFI	CCNGG	2 cut(s)	25, 436
BmsI	GCATC	3 cut(s)	60, 282, 421
BpiI	GAAGAC	2 cut(s)	264, 752
BpmI	CTGGAG	1 cut(s)	330
Bpu14I	TTCGAA	2 cut(s)	239, 255
BpuMI	CCSGG	1 cut(s)	25
Bsa29I	ATCGAT	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	23, 213
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
BseBI	CCWGG	1 cut(s)	436
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	23, 213
BseGI	GGATG	1 cut(s)	463
BshFI	GGCC	3 cut(s)	18, 245, 794
BshVI	ATCGAT	1 cut(s)	222
BsiHKAI	GWGCWC	2 cut(s)	168, 384
BsiSI	CCGG	2 cut(s)	25, 74
BslFI	GGGAC	1 cut(s)	29
BsmAI	GTCTC	2 cut(s)	242, 526
BsmBI	CGTCTC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	29
BsnI	GGCC	3 cut(s)	18, 245, 794
Bsp119I	TTCGAA	2 cut(s)	239, 255
Bsp1286I	GDGCHC	3 cut(s)	168, 185, 384
Bsp143I	GATC	2 cut(s)	548, 826
BspACI	CCGC	5 cut(s)	99, 159, 179, 204, 439
BspANI	GGCC	3 cut(s)	18, 245, 794
BspDI	ATCGAT	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	103, 184
BspMI	ACCTGC	1 cut(s)	472
BspT104I	TTCGAA	2 cut(s)	239, 255
BssECI	CCNNGG	2 cut(s)	23, 213
BssMI	GATC	2 cut(s)	548, 826
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	436
Bst4CI	ACNGT	2 cut(s)	54, 751
BstBI	TTCGAA	2 cut(s)	239, 255
BstC8I	GCNNGC	6 cut(s)	20, 88, 181, 469, 635, 651
BstDEI	CTNAG	1 cut(s)	863
BstF5I	GGATG	1 cut(s)	463
BstKTI	GATC	2 cut(s)	551, 829
BstMAI	GTCTC	2 cut(s)	242, 526
BstMBI	GATC	2 cut(s)	548, 826
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	1 cut(s)	436
BstNSI	RCATGY	1 cut(s)	712
BstSCI	CCNGG	2 cut(s)	23, 434
BstSFI	CTRYAG	1 cut(s)	364
BstV2I	GAAGAC	2 cut(s)	264, 752
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
Bsu15I	ATCGAT	1 cut(s)	222
BsuRI	GGCC	3 cut(s)	18, 245, 794
BsuTUI	ATCGAT	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	1 cut(s)	888
BveI	ACCTGC	1 cut(s)	472
Cac8I	GCNNGC	6 cut(s)	20, 88, 181, 469, 635, 651
Cfr13I	GGNCC	1 cut(s)	76
ClaI	ATCGAT	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	55, 372
CviAII	CATG	2 cut(s)	709, 871
CviQI	GTAC	2 cut(s)	55, 372
DdeI	CTNAG	1 cut(s)	863
DpnI	GATC	2 cut(s)	550, 828
DpnII	GATC	2 cut(s)	548, 826
DraI	TTTAAA	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	792
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	2 cut(s)	168, 185
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	76
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	764
EcoICRI	GAGCTC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	434
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	213
EcoT22I	ATGCAT	1 cut(s)	526
EcoT38I	GRGCYC	2 cut(s)	168, 185
ErhI	CCWWGG	1 cut(s)	213
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	2 cut(s)	712, 874
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	2 cut(s)	708, 870
FauI	CCCGC	1 cut(s)	172
FauNDI	CATATG	2 cut(s)	376, 757
FblI	GTMKAC	2 cut(s)	108, 779
Fnu4HI	GCNGC	3 cut(s)	100, 159, 205
FokI	GGATG	1 cut(s)	470
FriOI	GRGCYC	2 cut(s)	168, 185
Fsp4HI	GCNGC	3 cut(s)	100, 159, 205
FspBI	CTAG	1 cut(s)	692
GluI	GCNGC	3 cut(s)	100, 159, 205
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	3 cut(s)	18, 245, 794
HapII	CCGG	2 cut(s)	25, 74
Hin1II	CATG	2 cut(s)	712, 874
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	715
HpaII	CCGG	2 cut(s)	25, 74
HphI	GGTGA	1 cut(s)	401
Hpy166II	GTNNAC	4 cut(s)	109, 492, 780, 845
Hpy188I	TCNGA	6 cut(s)	33, 300, 688, 744, 806, 838
Hpy188III	TCNNGA	6 cut(s)	46, 309, 502, 661, 719, 897
Hpy8I	GTNNAC	4 cut(s)	109, 492, 780, 845
Hpy99I	CGWCG	4 cut(s)	62, 86, 110, 131
HpyAV	CCTTC	4 cut(s)	235, 246, 326, 349
HpyCH4III	ACNGT	2 cut(s)	54, 751
HpyCH4IV	ACGT	3 cut(s)	60, 251, 819
HpyCH4V	TGCA	4 cut(s)	90, 471, 524, 886
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	1 cut(s)	863
HpySE526I	ACGT	3 cut(s)	60, 251, 819
Hsp92II	CATG	2 cut(s)	712, 874
Kzo9I	GATC	2 cut(s)	548, 826
LmnI	GCTCC	3 cut(s)	4, 107, 188
LweI	GCATC	3 cut(s)	60, 282, 421
MaeI	CTAG	1 cut(s)	692
MaeII	ACGT	3 cut(s)	60, 251, 819
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	2 cut(s)	550, 828
MboI	GATC	2 cut(s)	548, 826
MboII	GAAGA	6 cut(s)	269, 406, 580, 734, 757, 836
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	3 cut(s)	168, 185, 384
MlsI	TGGCCA	1 cut(s)	794
MluCI	AATT	9 cut(s)	35, 92, 140, 267, 326, 336, 604, 728, 771
MluNI	TGGCCA	1 cut(s)	794
MmeI	TCCRAC	1 cut(s)	784
MnlI	CCTC	2 cut(s)	89, 128
Mox20I	TGGCCA	1 cut(s)	794
Mph1103I	ATGCAT	1 cut(s)	526
MroXI	GAANNNNTTC	1 cut(s)	359
MscI	TGGCCA	1 cut(s)	794
MseI	TTAA	2 cut(s)	12, 602
MslI	CAYNNNNRTG	2 cut(s)	387, 875
Msp20I	TGGCCA	1 cut(s)	794
MspI	CCGG	2 cut(s)	25, 74
MspR9I	CCNGG	2 cut(s)	25, 436
MvaI	CCWGG	1 cut(s)	436
MwoI	GCNNNNNNNGC	1 cut(s)	96
NciI	CCSGG	1 cut(s)	25
NdeI	CATATG	2 cut(s)	376, 757
NdeII	GATC	2 cut(s)	548, 826
NlaIII	CATG	2 cut(s)	712, 874
NlaIV	GGNNCC	2 cut(s)	103, 184
NmeAIII	GCCGAG	2 cut(s)	187, 271
NsiI	ATGCAT	1 cut(s)	526
NspI	RCATGY	1 cut(s)	712
NspV	TTCGAA	2 cut(s)	239, 255
OliI	CACNNNNGTG	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	715
PflFI	GACNNNGTC	1 cut(s)	80
PkrI	GCNGC	3 cut(s)	101, 160, 206
PsiI	TTATAA	1 cut(s)	518
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	2 cut(s)	103, 184
PspPI	GGNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	548
PsyI	GACNNNGTC	1 cut(s)	80
RsaI	GTAC	2 cut(s)	56, 373
RsaNI	GTAC	2 cut(s)	55, 372
RseI	CAYNNNNRTG	2 cut(s)	387, 875
SacI	GAGCTC	1 cut(s)	168
SalI	GTCGAC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	12, 602
SatI	GCNGC	3 cut(s)	100, 159, 205
Sau3AI	GATC	2 cut(s)	548, 826
Sau96I	GGNCC	1 cut(s)	76
ScrFI	CCNGG	2 cut(s)	25, 436
SduI	GDGCHC	3 cut(s)	168, 185, 384
SetI	ASST	9 cut(s)	63, 81, 120, 168, 219, 254, 466, 822, 892
SfaNI	GCATC	3 cut(s)	60, 282, 421
SfcI	CTRYAG	1 cut(s)	364
SfuI	TTCGAA	2 cut(s)	239, 255
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	2 cut(s)	387, 875
SpeI	ACTAGT	1 cut(s)	691
Sse9I	AATT	9 cut(s)	35, 92, 140, 267, 326, 336, 604, 728, 771
SsiI	CCGC	5 cut(s)	99, 159, 179, 204, 439
SspMI	CTAG	1 cut(s)	692
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	23, 434
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	54, 751
TaiI	ACGT	3 cut(s)	63, 254, 822
TaqI	TCGA	6 cut(s)	108, 114, 120, 222, 239, 255
TasI	AATT	9 cut(s)	35, 92, 140, 267, 326, 336, 604, 728, 771
TatI	WGTACW	1 cut(s)	371
TauI	GCSGC	3 cut(s)	102, 161, 207
TfiI	GAWTC	1 cut(s)	715
Tru1I	TTAA	2 cut(s)	12, 602
Tru9I	TTAA	2 cut(s)	12, 602
TscAI	CASTG	1 cut(s)	888
TspDTI	ATGAA	5 cut(s)	133, 368, 474, 744, 859
TspGWI	ACGGA	5 cut(s)	94, 160, 175, 438, 672
TspRI	CASTG	1 cut(s)	888
Tth111I	GACNNNGTC	1 cut(s)	80
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	6 cut(s)	35, 92, 140, 267, 326, 336
XceI	RCATGY	1 cut(s)	712
XmiI	GTMKAC	2 cut(s)	108, 779
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	692
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.