Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8250275.1

Orthogroup ID

OG0010604

Physical Location & Seq

Genomic Coordinates Forward (+)

403 .. 786

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8250275.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgtttgagcaggttttcaagcctttgaaagctgaggcattcgaagaagatggcattttggttttggagtttggagagacacttcccactgggccgggagttttggccattgggtttgaaggaattttgaatgacaagatgaagggattctatagaagtacatatgagcataatggtgagaagaaaaatatggcagttacccagtttgaacctgttgatgccaggcggtgctttccatgttgggacgaacctgcttggaaggtctcttttggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0006810 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0031090 GO:0031406 GO:0033218 GO:0033293 GO:0033554 GO:0034641 GO:0036094 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043177 GO:0043226 GO:0043227 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

91

Amino Acids

10.34

Weight (kDa)

4.8

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010604)

Species	Orthologous Gene IDs
malus_domestica	MD08G1067100.v1.1 MD08G1067200.v1.1
prunus_persica	Prupe.1G457200_v2.0.a1 Prupe.1G457200_v2.0.a1
pyrus_communis	pycom08g05540 pycom08g05580 pycom15g05120
rosa_multiflora	Rmu_co7981604.1_g000001 Rmu_co8250275.1_g000001 Rmu_sc0032968.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072890
rosa_samantha	Rh5AG025300 Rh5AG025700 Rh5BG026800 Rh5CG028100 Rh5CG028200 Rh5CG028500 Rh5DG025400 Rh6DG505300 Rh6DG505400
rosa_wichuraiana	Rw5G002360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	259
AciI	CCGC	1 cut(s)	226
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	123
AfaI	GTAC	1 cut(s)	160
AgsI	TTSAA	5 cut(s)	19, 28, 119, 130, 209
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Alw26I	GTCTC	2 cut(s)	71, 268
AoxI	GGCC	2 cut(s)	92, 105
ApoI	RAATTY	1 cut(s)	123
Asp700I	GAANNNNTTC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	92
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	188
AsuII	TTCGAA	1 cut(s)	42
BalI	TGGCCA	1 cut(s)	107
BbvCI	CCTCAGC	1 cut(s)	33
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	2 cut(s)	71, 268
BfmI	CTRYAG	1 cut(s)	151
BfuAI	ACCTGC	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	96, 223
BmgT120I	GGNCC	1 cut(s)	92
BmrFI	CCNGG	2 cut(s)	96, 223
BmrI	ACTGGG	2 cut(s)	99, 196
BmsI	GCATC	1 cut(s)	208
BmuI	ACTGGG	2 cut(s)	99, 196
Bpu10I	CCTNAGC	1 cut(s)	33
Bpu14I	TTCGAA	1 cut(s)	42
BpuMI	CCSGG	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	268
Bse1I	ACTGG	2 cut(s)	94, 202
BseBI	CCWGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	2 cut(s)	94, 202
BshFI	GGCC	2 cut(s)	94, 107
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	1 cut(s)	257
BsmAI	GTCTC	2 cut(s)	71, 268
BsmFI	GGGAC	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	94, 107
Bso31I	GGTCTC	1 cut(s)	268
Bsp119I	TTCGAA	1 cut(s)	42
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	2 cut(s)	94, 107
BspCNI	CTCAG	1 cut(s)	25
BspMI	ACCTGC	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	268
BsrI	ACTGG	2 cut(s)	94, 202
Bst2UI	CCWGG	1 cut(s)	223
BstBI	TTCGAA	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	33
BstMAI	GTCTC	2 cut(s)	71, 268
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	2 cut(s)	94, 221
BstSFI	CTRYAG	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	94, 107
BtsIMutI	CAGTG	1 cut(s)	87
BveI	ACCTGC	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	4 cut(s)	22, 32, 94, 107
CviKI_1	RGCY	4 cut(s)	22, 32, 94, 107
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	1 cut(s)	33
EaeI	YGGCCR	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	221
FaeI	CATG	1 cut(s)	240
FaiI	YATR	6 cut(s)	153, 163, 165, 171, 191, 238
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	1 cut(s)	236
FauNDI	CATATG	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	94, 107
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	1 cut(s)	240
HinfI	GANTC	1 cut(s)	147
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	188
HpyAV	CCTTC	3 cut(s)	113, 136, 253
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	240
LpnPI	CCDG	7 cut(s)	75, 108, 208, 215, 225, 235, 264
LweI	GCATC	1 cut(s)	208
MaeIII	GTNAC	1 cut(s)	196
MboII	GAAGA	3 cut(s)	56, 59, 193
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	1 cut(s)	123
MluNI	TGGCCA	1 cut(s)	107
MnlI	CCTC	1 cut(s)	28
Mox20I	TGGCCA	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	1 cut(s)	274
MslI	CAYNNNNRTG	1 cut(s)	174
Msp20I	TGGCCA	1 cut(s)	107
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	96, 223
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	223
NciI	CCSGG	1 cut(s)	96
NdeI	CATATG	1 cut(s)	163
NlaIII	CATG	1 cut(s)	240
NspV	TTCGAA	1 cut(s)	42
PctI	GAATGC	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	92
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	274
Sau96I	GGNCC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	96, 223
SetI	ASST	5 cut(s)	15, 34, 214, 253, 264
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	1 cut(s)	151
SfuI	TTCGAA	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	226
StyD4I	CCNGG	2 cut(s)	94, 221
TaqI	TCGA	1 cut(s)	42
TasI	AATT	1 cut(s)	123
TatI	WGTACW	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	147
Tru1I	TTAA	1 cut(s)	274
Tru9I	TTAA	1 cut(s)	274
TscAI	CASTG	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.