Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7981604.1

Orthogroup ID

OG0010604

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 216

Gene Structure 215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7981604.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 215 bp

atggcggagcagttcaaaggccaaccccgccttcccaaattcgccgtccccaaacgttacgacgttagcctcaaaccggacctcgccgcctgcaaattcgccggttccgtcgccatcgacctcgatatcgtatccgataccaacttcatcgtcctcaatgccgcggagctcgccgtcgacaccgcaaccgtctctttcactcacaaaaactcttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0006810 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0031090 GO:0031406 GO:0033218 GO:0033293 GO:0033554 GO:0034641 GO:0036094 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043177 GO:0043226 GO:0043227 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

72

Amino Acids

7.77

Weight (kDa)

6.53

Isoelectric Point (pI)

19.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010604)

Species	Orthologous Gene IDs
malus_domestica	MD08G1067100.v1.1 MD08G1067200.v1.1
prunus_persica	Prupe.1G457200_v2.0.a1 Prupe.1G457200_v2.0.a1
pyrus_communis	pycom08g05540 pycom08g05580 pycom15g05120
rosa_multiflora	Rmu_co7981604.1_g000001 Rmu_co8250275.1_g000001 Rmu_sc0032968.1_g000001
rosa_roxburghii	Rroxscaffold_1G00072890
rosa_samantha	Rh5AG025300 Rh5AG025700 Rh5BG026800 Rh5CG028100 Rh5CG028200 Rh5CG028500 Rh5DG025400 Rh6DG505300 Rh6DG505400
rosa_wichuraiana	Rw5G002360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	1 cut(s)	164
AciI	CCGC	6 cut(s)	5, 28, 87, 162, 164, 183
AclI	AACGTT	1 cut(s)	55
AcsI	RAATTY	2 cut(s)	38, 95
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	16
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	196
AoxI	GGCC	1 cut(s)	19
ApoI	RAATTY	2 cut(s)	38, 95
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
AspS9I	GGNCC	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	171
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	2 cut(s)	29, 158
BciVI	GTATCC	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	142
BisI	GCNGC	2 cut(s)	87, 162
BlsI	GCNGC	2 cut(s)	88, 163
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	76
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	162
BseLI	CCNNNNNNNGG	1 cut(s)	76
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	77, 102
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	196
BsmBI	CGTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	1 cut(s)	21
Bsp1286I	GDGCHC	1 cut(s)	171
BspACI	CCGC	6 cut(s)	5, 28, 87, 162, 164, 183
BspANI	GGCC	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	91, 171
BstDSI	CCRYGG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	164
BstMAI	GTCTC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 170
BstUI	CGCG	1 cut(s)	164
BsuI	GTATCC	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	162
Cac8I	GCNNGC	2 cut(s)	91, 171
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	79
Cfr42I	CCGCGG	1 cut(s)	165
CviJI	RGCY	3 cut(s)	21, 69, 169
CviKI_1	RGCY	3 cut(s)	21, 69, 169
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	171
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	169
EcoRV	GATATC	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	171
Esp3I	CGTCTC	1 cut(s)	196
FaqI	GGGAC	1 cut(s)	32
FauI	CCCGC	1 cut(s)	35
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	2 cut(s)	87, 162
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	2 cut(s)	87, 162
GluI	GCNGC	2 cut(s)	87, 162
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	2 cut(s)	77, 102
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HpaII	CCGG	2 cut(s)	77, 102
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	3 cut(s)	65, 113, 179
HpyAV	CCTTC	1 cut(s)	41
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	2 cut(s)	55, 63
HpyCH4V	TGCA	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 170
HpySE526I	ACGT	2 cut(s)	55, 63
KspI	CCGCGG	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	7, 166
LpnPI	CCDG	3 cut(s)	90, 103, 115
MaeII	ACGT	2 cut(s)	55, 63
MaeIII	GTNAC	1 cut(s)	56
MboII	GAAGA	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	2 cut(s)	38, 95
MnlI	CCTC	4 cut(s)	80, 92, 131, 164
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	2 cut(s)	77, 102
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	27, 170
NlaIV	GGNNCC	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	88, 163
Psp124BI	GAGCTC	1 cut(s)	171
Psp1406I	AACGTT	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	79
SacI	GAGCTC	1 cut(s)	171
SacII	CCGCGG	1 cut(s)	165
SalI	GTCGAC	1 cut(s)	176
SatI	GCNGC	2 cut(s)	87, 162
Sau96I	GGNCC	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	5 cut(s)	58, 66, 84, 123, 171
Sfr303I	CCGCGG	1 cut(s)	165
SgeI	CNNG	8 cut(s)	39, 89, 95, 102, 114, 134, 175, 182
SgrBI	CCGCGG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	79
Sse9I	AATT	2 cut(s)	38, 95
SsiI	CCGC	6 cut(s)	5, 28, 87, 162, 164, 183
SstI	GAGCTC	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	2 cut(s)	58, 66
TaqI	TCGA	3 cut(s)	117, 123, 177
TasI	AATT	2 cut(s)	38, 95
TauI	GCSGC	2 cut(s)	89, 164
TspDTI	ATGAA	1 cut(s)	136
TspGWI	ACGGA	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	2 cut(s)	38, 95
XmiI	GTMKAC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.