Rh5BG026800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0010604
Physical Location & Seq
Forward (+)
1901458 .. 1902729
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG026800.1

Sequence Viewer

Length: 714 bp
ATGCGCTCTTCCTCGGCACCGGCACCGGCGCTCTCTTCCTTAGCACAGGCACCGGCGAGCTCTTCTTCGGCACCGACGAGCGGAGTACCGCTTCACTTTATCAAGGAGGAACAATACTATCTAATATACCAGCATGAGCAGTTCAAGTCGGAATATATCGGTTTACCTTTAACCTATTCTCCAGAGGGGAGGCCGTGTACGTTGATTAACAATAATCATTATCTTATCACCTTTAATCTGGGTTTTGCTCTGGATCTGATAAGCGGCACACCGTTTCAACAGGTACTCTTCTACGACTCGGTCAACAACTTTGATTGCAGCGAGGTATCTCTGGCACCCCCACACAAGCTTACAATGAACAAGGGCAAGTATTACATCCCATGGTCTCGCCTTGTTTGGGTGAGAGAGGGGATTATGTGCCCGCTCACAGTCACTCTACTGCTCGGGCAGAGGAGACCCGCCGTCGAGCGCATGGTCACAGCACGGTGGATGTACGACCAACACGTCACTGAGGAAATTTTGAGAGACTATTTTGACAGGTCAGGCTTTAGCTTGCAAGAGGTGGAGATCCTAGAGCCTGGGCTGGGATATCTGTTATTCGAGAATAATTATGCAGTCCATAATCTGATGTATGGACAGGAGGAAGCAGAGTATTATGTGGGTGACTCAAATAGCACTATTCTGTTCAGCCAACGAGTATCTGGTGACTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.95

Weight (kDa)

5.11

Isoelectric Point (pI)

68.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 503
AccB1I GGYRCC 5 cut(s) 16, 22, 49, 70, 334
AccBSI CCGCTC 2 cut(s) 81, 424
AciI CCGC 5 cut(s) 81, 89, 264, 422, 459
AclWI GGATC 2 cut(s) 261, 562
AcsI RAATTY 1 cut(s) 516
AfaI GTAC 4 cut(s) 87, 199, 285, 494
AfiI CCNNNNNNNGG 3 cut(s) 80, 397, 584
AflIII ACRYGT 1 cut(s) 502
AgsI TTSAA 2 cut(s) 145, 278
AhdI GACNNNNNGTC 1 cut(s) 461
AjiI CACGTC 1 cut(s) 505
AjnI CCWGG 1 cut(s) 577
AluBI AGCT 3 cut(s) 60, 349, 552
AluI AGCT 3 cut(s) 60, 349, 552
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 3 cut(s) 390, 448, 519
AlwI GGATC 2 cut(s) 261, 562
Ama87I CYCGRG 1 cut(s) 443
AoxI GGCC 1 cut(s) 191
ApeKI GCWGC 1 cut(s) 318
ApoI RAATTY 1 cut(s) 516
AspLEI GCGC 3 cut(s) 6, 31, 471
AsuHPI GGTGA 3 cut(s) 220, 412, 674
AvaI CYCGRG 1 cut(s) 443
BaeGI GKGCMC 1 cut(s) 422
BanI GGYRCC 5 cut(s) 16, 22, 49, 70, 334
BanII GRGCYC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 330
BceAI ACGGC 2 cut(s) 178, 446
BciT130I CCWGG 1 cut(s) 579
BcoDI GTCTC 3 cut(s) 390, 448, 519
BfaI CTAG 1 cut(s) 572
BfoI RGCGCY 1 cut(s) 32
BisI GCNGC 2 cut(s) 265, 319
BlsI GCNGC 2 cut(s) 266, 320
Bme1390I CCNGG 1 cut(s) 579
BmeRI GACNNNNNGTC 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 443
BmgBI CACGTC 1 cut(s) 505
BmiI GGNNCC 5 cut(s) 18, 24, 51, 72, 336
BmrFI CCNGG 1 cut(s) 579
BpmI CTGGAG 1 cut(s) 165
Bpu10I CCTNAGC 1 cut(s) 40
BsaI GGTCTC 2 cut(s) 390, 448
BsaJI CCNNGG 3 cut(s) 12, 380, 578
BsaXI ACNNNNNCTCC 4 cut(s) 163, 181, 193, 211
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 397, 584
Bse118I RCCGGY 3 cut(s) 19, 25, 52
BseBI CCWGG 1 cut(s) 579
BseDI CCNNGG 3 cut(s) 12, 380, 578
BseGI GGATG 2 cut(s) 375, 495
BseLI CCNNNNNNNGG 3 cut(s) 80, 397, 584
BseMII CTCAG 1 cut(s) 501
BseRI GAGGAG 1 cut(s) 466
BseSI GKGCMC 1 cut(s) 422
BseXI GCAGC 1 cut(s) 330
BseYI CCCAGC 1 cut(s) 583
BshFI GGCC 1 cut(s) 193
BshNI GGYRCC 5 cut(s) 16, 22, 49, 70, 334
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 3 cut(s) 20, 26, 53
BslI CCNNNNNNNGG 3 cut(s) 80, 397, 584
BsmAI GTCTC 3 cut(s) 390, 448, 519
BsnI GGCC 1 cut(s) 193
Bso31I GGTCTC 2 cut(s) 390, 448
BsoBI CYCGRG 1 cut(s) 443
Bsp1286I GDGCHC 2 cut(s) 62, 422
Bsp143I GATC 2 cut(s) 253, 567
Bsp19I CCATGG 1 cut(s) 380
BspACI CCGC 5 cut(s) 81, 89, 264, 422, 459
BspANI GGCC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 502
BspLI GGNNCC 5 cut(s) 18, 24, 51, 72, 336
BspPI GGATC 2 cut(s) 261, 562
BspQI GCTCTTC 2 cut(s) 13, 67
BspT107I GGYRCC 5 cut(s) 16, 22, 49, 70, 334
BspTNI GGTCTC 2 cut(s) 390, 448
BsrBI CCGCTC 2 cut(s) 81, 424
BsrFI RCCGGY 3 cut(s) 19, 25, 52
BssAI RCCGGY 3 cut(s) 19, 25, 52
BssECI CCNNGG 3 cut(s) 12, 380, 578
BssMI GATC 2 cut(s) 253, 567
BssT1I CCWWGG 1 cut(s) 380
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 4 cut(s) 273, 430, 486, 710
Bst6I CTCTTC 4 cut(s) 13, 40, 67, 293
BstC8I GCNNGC 3 cut(s) 58, 422, 554
BstDEI CTNAG 2 cut(s) 40, 510
BstDSI CCRYGG 1 cut(s) 380
BstF5I GGATG 2 cut(s) 375, 495
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 3 cut(s) 6, 31, 471
BstKTI GATC 2 cut(s) 256, 570
BstMAI GTCTC 3 cut(s) 390, 448, 519
BstMBI GATC 2 cut(s) 253, 567
BstNI CCWGG 1 cut(s) 579
BstSCI CCNGG 1 cut(s) 577
BstSLI GKGCMC 1 cut(s) 422
BstV1I GCAGC 1 cut(s) 330
BstX2I RGATCY 2 cut(s) 253, 567
BstYI RGATCY 2 cut(s) 253, 567
BsuRI GGCC 1 cut(s) 193
BtgI CCRYGG 1 cut(s) 380
BtrI CACGTC 1 cut(s) 505
BtsCI GGATG 2 cut(s) 375, 495
BtsIMutI CAGTG 1 cut(s) 507
Cac8I GCNNGC 3 cut(s) 58, 422, 554
CfoI GCGC 3 cut(s) 6, 31, 471
Cfr10I RCCGGY 3 cut(s) 19, 25, 52
Csp6I GTAC 4 cut(s) 86, 198, 284, 493
CviAII CATG 3 cut(s) 134, 381, 472
CviJI RGCY 8 cut(s) 60, 193, 349, 546, 552, 577, 583, 690
CviKI_1 RGCY 8 cut(s) 60, 193, 349, 546, 552, 577, 583, 690
CviQI GTAC 4 cut(s) 86, 198, 284, 493
DdeI CTNAG 2 cut(s) 40, 510
DpnI GATC 2 cut(s) 255, 569
DpnII GATC 2 cut(s) 253, 567
DrdI GACNNNNNNGTC 1 cut(s) 503
DriI GACNNNNNGTC 1 cut(s) 461
DseDI GACNNNNNNGTC 1 cut(s) 503
Eam1104I CTCTTC 4 cut(s) 13, 40, 67, 293
Eam1105I GACNNNNNGTC 1 cut(s) 461
EarI CTCTTC 4 cut(s) 13, 40, 67, 293
Ecl136II GAGCTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 380
Eco24I GRGCYC 1 cut(s) 62
Eco31I GGTCTC 2 cut(s) 390, 448
Eco32I GATATC 1 cut(s) 590
Eco53kI GAGCTC 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 443
EcoICRI GAGCTC 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 577
EcoRV GATATC 1 cut(s) 590
EcoT14I CCWWGG 1 cut(s) 380
EcoT38I GRGCYC 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 380
FaeI CATG 3 cut(s) 137, 384, 475
FatI CATG 3 cut(s) 133, 380, 471
FauI CCCGC 2 cut(s) 429, 466
Fnu4HI GCNGC 2 cut(s) 265, 319
FokI GGATG 2 cut(s) 362, 502
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 2 cut(s) 265, 319
FspBI CTAG 1 cut(s) 572
GlaI GCGC 3 cut(s) 5, 30, 470
GluI GCNGC 2 cut(s) 265, 319
GsaI CCCAGC 1 cut(s) 587
GsuI CTGGAG 1 cut(s) 165
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 1 cut(s) 193
HapII CCGG 3 cut(s) 20, 26, 53
HhaI GCGC 3 cut(s) 6, 31, 471
Hin1II CATG 3 cut(s) 137, 384, 475
Hin6I GCGC 3 cut(s) 4, 29, 469
HinP1I GCGC 3 cut(s) 4, 29, 469
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 2 cut(s) 296, 665
HpaII CCGG 3 cut(s) 20, 26, 53
HphI GGTGA 3 cut(s) 220, 412, 674
Hpy166II GTNNAC 3 cut(s) 164, 198, 304
Hpy188I TCNGA 3 cut(s) 151, 258, 627
Hpy188III TCNNGA 3 cut(s) 182, 251, 601
Hpy8I GTNNAC 3 cut(s) 164, 198, 304
Hpy99I CGWCG 2 cut(s) 79, 467
HpyCH4III ACNGT 4 cut(s) 273, 430, 486, 710
HpyCH4IV ACGT 2 cut(s) 200, 504
HpyCH4V TGCA 3 cut(s) 318, 556, 614
HpyF3I CTNAG 2 cut(s) 40, 510
HpySE526I ACGT 2 cut(s) 200, 504
Hsp92II CATG 3 cut(s) 137, 384, 475
HspAI GCGC 3 cut(s) 4, 29, 469
Kzo9I GATC 2 cut(s) 253, 567
LguI GCTCTTC 2 cut(s) 13, 67
Lsp1109I GCAGC 1 cut(s) 330
MaeI CTAG 1 cut(s) 572
MaeII ACGT 2 cut(s) 200, 504
MaeIII GTNAC 5 cut(s) 430, 475, 505, 662, 704
MalI GATC 2 cut(s) 255, 569
MbiI CCGCTC 2 cut(s) 81, 424
MboI GATC 2 cut(s) 253, 567
MboII GAAGA 4 cut(s) 27, 54, 57, 280
MflI RGATCY 2 cut(s) 253, 567
MhlI GDGCHC 2 cut(s) 62, 422
MluCI AATT 2 cut(s) 516, 607
MlyI GAGTC 2 cut(s) 290, 659
MmeI TCCRAC 1 cut(s) 129
MseI TTAA 3 cut(s) 170, 207, 234
MspI CCGG 3 cut(s) 20, 26, 53
MspR9I CCNGG 1 cut(s) 579
MvaI CCWGG 1 cut(s) 579
NcoI CCATGG 1 cut(s) 380
NdeII GATC 2 cut(s) 253, 567
NlaIII CATG 3 cut(s) 137, 384, 475
NlaIV GGNNCC 5 cut(s) 18, 24, 51, 72, 336
NmuCI GTSAC 5 cut(s) 430, 475, 505, 662, 704
PciSI GCTCTTC 2 cut(s) 13, 67
PcsI WCGNNNNNNNCGW 2 cut(s) 74, 501
PflFI GACNNNGTC 1 cut(s) 299
PkrI GCNGC 2 cut(s) 266, 320
PleI GAGTC 2 cut(s) 290, 659
PpsI GAGTC 2 cut(s) 290, 659
Psp124BI GAGCTC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 577
PspFI CCCAGC 1 cut(s) 583
PspGI CCWGG 1 cut(s) 577
PspN4I GGNNCC 5 cut(s) 18, 24, 51, 72, 336
PsuI RGATCY 2 cut(s) 253, 567
PsyI GACNNNGTC 1 cut(s) 299
RsaI GTAC 4 cut(s) 87, 199, 285, 494
RsaNI GTAC 4 cut(s) 86, 198, 284, 493
SacI GAGCTC 1 cut(s) 62
SapI GCTCTTC 2 cut(s) 13, 67
SaqAI TTAA 3 cut(s) 170, 207, 234
SatI GCNGC 2 cut(s) 265, 319
Sau3AI GATC 2 cut(s) 253, 567
SchI GAGTC 2 cut(s) 290, 659
ScrFI CCNGG 1 cut(s) 579
SduI GDGCHC 2 cut(s) 62, 422
SgrAI CRCCGGYG 2 cut(s) 25, 52
Sse9I AATT 2 cut(s) 516, 607
SsiI CCGC 5 cut(s) 81, 89, 264, 422, 459
SspMI CTAG 1 cut(s) 572
SstI GAGCTC 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 577
StyI CCWWGG 1 cut(s) 380
TaaI ACNGT 4 cut(s) 273, 430, 486, 710
TaiI ACGT 2 cut(s) 203, 507
TaqI TCGA 2 cut(s) 465, 600
TaqII GACCGA 1 cut(s) 289
TasI AATT 2 cut(s) 516, 607
TauI GCSGC 1 cut(s) 267
Tru1I TTAA 3 cut(s) 170, 207, 234
Tru9I TTAA 3 cut(s) 170, 207, 234
TscAI CASTG 1 cut(s) 514
TseFI GTSAC 5 cut(s) 430, 475, 505, 662, 704
TseI GCWGC 1 cut(s) 318
Tsp45I GTSAC 5 cut(s) 430, 475, 505, 662, 704
TspDTI ATGAA 1 cut(s) 371
TspRI CASTG 1 cut(s) 514
Tth111I GACNNNGTC 1 cut(s) 299
XapI RAATTY 1 cut(s) 516
XcmI CCANNNNNNNNNTGG 1 cut(s) 698
XspI CTAG 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.